Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g102680 Pisum sativum HOM05D007219 ORTHO05D008995 4.4e-107 391.3 202 100.0
Medtr3g083200 Medicago truncatula HOM05D007219 ORTHO05D008995 4.8e-98 361.3 201 92.0
TPR.G19322 Trifolium pratense HOM05D007219 ORTHO05D008995 1.6e-93 346.3 202 87.1
Lj6g0005071 Lotus japonicus HOM05D007219 ORTHO05D008995 7.7e-88 327.4 197 81.7
arahy.Tifrunner.gnm1.ann1.N6EW4G Arachis hypogaea HOM05D007219 ORTHO05D008995 2.1e-85 319.3 200 79.0
Lalb_Chr22g0360881 Lupinus albus HOM05D007219 ORTHO05D008995 3.4e-83 312.0 193 80.3
Glyma.13G025700 Glycine max HOM05D007219 ORTHO05D008995 4.4e-83 311.6 197 79.2
Phvul.006G013300 Phaseolus vulgaris HOM05D007219 ORTHO05D008995 3.8e-79 298.5 197 74.1
Prupe.3G202800 Prunus persica HOM05D007219 ORTHO05D008995 1.2e-75 287.0 197 70.6
RcHm_v2.0_Chr2g0156861 Rosa chinensis HOM05D007219 ORTHO05D008995 2.6e-75 285.8 196 70.4
QL08p028873 Quercus lobata HOM05D007219 ORTHO05D008995 1.3e-74 283.5 197 68.5
FvH4_6g41300 Fragaria vesca HOM05D007219 ORTHO05D008995 2.8e-74 282.3 197 70.1
FAN14G1895 Fragaria x ananassa HOM05D007219 ORTHO05D008995 1.4e-73 280.0 197 69.5
Duzib138G0301 Durio zibethinus HOM05D007219 ORTHO05D008995 9.2e-73 277.3 194 69.6
TAR626G0546 Trochodendron aralioides HOM05D007219 ORTHO05D008995 3.5e-72 275.4 194 68.6
GSVIVG01030037001 Vitis vinifera HOM05D007219 ORTHO05D008995 1.7e-71 273.1 190 70.0
Gorai.001G193200 Gossypium raimondii HOM05D007219 ORTHO05D008995 3.9e-71 271.9 194 68.0
Gohir.A07G167500 Gossypium hirsutum HOM05D007219 ORTHO05D008995 5.0e-71 271.6 194 68.6
AT2G04845 Arabidopsis thaliana HOM05D007219 ORTHO05D008995 1.1e-70 270.4 193 66.3
Gohir.D07G173000 Gossypium hirsutum HOM05D007219 ORTHO05D008995 1.1e-70 270.4 194 67.5
Cc07_g19250 Coffea canephora HOM05D007219 ORTHO05D008995 1.5e-70 270.0 192 69.8
Cpa.g.sc395.3 Carica papaya HOM05D007219 ORTHO05D008995 1.9e-70 269.6 194 69.1
Sp3g23430 Schrenkiella parvula HOM05D007219 ORTHO05D008995 1.9e-70 269.6 193 65.8
Thecc.01G189100 Theobroma cacao HOM05D007219 ORTHO05D008995 1.9e-70 269.6 194 68.0
CSS0025035 Camellia sinensis var. sinensis HOM05D007219 ORTHO05D008995 3.3e-70 268.9 193 68.9
arahy.Tifrunner.gnm1.ann1.E78GDQ Arachis hypogaea HOM05D007219 ORTHO05D008995 4.3e-70 268.5 326 48.5
arahy.Tifrunner.gnm1.ann1.XZ9N91 Arachis hypogaea HOM05D007219 ORTHO05D008995 4.3e-70 268.5 326 48.5
Potri.014G161800 Populus trichocarpa HOM05D007219 ORTHO05D008995 4.3e-70 268.5 194 69.6
MD09G1120700 Malus domestica HOM05D007219 ORTHO05D008995 5.6e-70 268.1 197 66.5
TWI36G0002 Tripterygium wilfordii HOM05D007219 ORTHO05D008995 5.6e-70 268.1 194 68.0
CARHR102840 Cardamine hirsuta HOM05D007219 ORTHO05D008995 7.3e-70 267.7 201 63.7
Nn1g03266 Nelumbo nucifera HOM05D007219 ORTHO05D008995 1.2e-69 266.9 185 69.2
Atru.chr6.3346 Acer truncatum HOM05D007219 ORTHO05D008995 1.6e-69 266.5 195 67.2
Sopen05g025870 Solanum pennellii HOM05D007219 ORTHO05D008995 2.1e-69 266.2 194 67.0
Dinv05845 Davidia involucrata HOM05D007219 ORTHO05D008995 2.8e-69 265.8 187 69.0
Migut.M00020 Erythranthe guttata HOM05D007219 ORTHO05D008995 3.6e-69 265.4 193 66.3
THA.LOC104826618 Tarenaya hassleriana HOM05D007219 ORTHO05D008995 6.1e-69 264.6 193 65.3
vmacro12114 Vaccinium macrocarpon HOM05D007219 ORTHO05D008995 6.1e-69 264.6 194 67.5
CsaV3_7G002720 Cucumis sativus L. HOM05D007219 ORTHO05D008995 1.0e-68 263.8 200 64.5
ECA234G4660 Erigeron canadensis HOM05D007219 ORTHO05D008995 1.0e-68 263.8 194 67.5
CAN.G716.12 Capsicum annuum HOM05D007219 ORTHO05D008995 1.4e-68 263.5 194 65.5
AL3G42440 Arabidopsis lyrata HOM05D007219 ORTHO05D008995 1.8e-68 263.1 193 64.2
Carub.0003s2645 Capsella rubella HOM05D007219 ORTHO05D008995 5.2e-68 261.5 193 64.2
Peaxi162Scf00147g01822 Petunia axillaris HOM05D007219 ORTHO05D008995 5.2e-68 261.5 194 64.9
Nitab4.5_0011106g0020 Nicotiana tabacum HOM05D007219 ORTHO05D008995 6.8e-68 261.2 193 65.8
BolC3t17801H Brassica oleracea HOM05D007219 ORTHO05D008995 1.2e-67 260.4 193 62.2
Thhalv10002661m.g Eutrema salsugineum HOM05D007219 ORTHO05D008995 1.2e-67 260.4 193 64.8
Lsat_1_v5_gn_5_121560 Lactuca sativa HOM05D007219 ORTHO05D008995 1.2e-67 260.4 194 67.0
CANSAT64G0298 Cannabis sativa HOM05D007219 ORTHO05D008995 1.5e-67 260.0 192 66.7
HanXRQChr12g0373931 Helianthus annuus HOM05D007219 ORTHO05D008995 3.4e-67 258.8 187 68.4
Hma1.2p1_0133F.1_g061230 Hydrangea macrophylla HOM05D007219 ORTHO05D008995 3.4e-67 258.8 192 65.6
CiPaw.03G278000 Carya illinoinensis HOM05D007219 ORTHO05D008995 5.8e-67 258.1 199 64.8
Aa31LG1G4150 Aethionema arabicum HOM05D002708 ORTHO05D003516 9.8e-67 257.3 193 65.3
Hund24148 Selenicereus undatus HOM05D007219 ORTHO05D008995 9.8e-67 257.3 187 69.0
Eucgr.K00659 Eucalyptus grandis HOM05D007219 ORTHO05D008995 1.7e-66 256.5 188 67.0
MSTRG.14930 Avicennia marina HOM05D007219 ORTHO05D008995 3.7e-66 255.4 194 64.9
SalBow7G0564 Salvia bowleyana HOM05D007219 ORTHO05D008995 4.9e-66 255.0 192 63.5
Oeu029809.1 Olea europaea HOM05D007219 ORTHO05D008995 1.4e-65 253.4 192 63.5
DCAR_019229 Daucus carota HOM05D007219 ORTHO05D008995 2.4e-65 252.7 193 66.8
ATR0712G058 Amborella trichopoda HOM05D007219 ORTHO05D008995 3.2e-65 252.3 194 63.4
Manes.12G083700 Manihot esculenta HOM05D007219 ORTHO05D008995 5.4e-65 251.5 179 70.4
PGR142G0267 Punica granatum HOM05D007219 ORTHO05D008995 1.6e-64 250.0 195 64.1
PSO302G0207 Papaver somniferum HOM05D007219 ORTHO05D008995 2.7e-64 249.2 178 69.1
Sed0018447 Sechium edule HOM05D007219 ORTHO05D008995 1.0e-63 247.3 177 68.4
CDE10G1006 Ceratophyllum demersum HOM05D007219 ORTHO05D008995 1.3e-63 246.9 175 69.7
PGSC0003DMG400020758 Solanum tuberosum HOM05D007219 ORTHO05D008995 2.3e-63 246.1 169 69.2
Haze_12702 Corylus avellana HOM05D007219 ORTHO05D008995 5.6e-62 241.5 192 62.5
Aqoxy1G04023 Aquilegia oxysepala HOM05D007219 ORTHO05D008995 7.3e-62 241.1 195 59.5
HPP92_020392 Vanilla planifolia HOM05D007219 ORTHO05D008995 8.0e-61 237.7 180 63.3
MELO3C024213.2 Cucumis melo HOM05D007219 ORTHO05D008995 4.0e-60 235.3 200 58.5
FAN05G4854 Fragaria x ananassa HOM05D007219 ORTHO05D008995 1.7e-58 229.9 203 61.1
Duzib133G0547 Durio zibethinus HOM05D007219 ORTHO05D008995 2.9e-58 229.2 182 63.2
Sabra14G0123400 Salix brachista HOM05D007219 ORTHO05D008995 3.2e-57 225.7 268 49.6
Ciclev10016673m.g Citrus clementina HOM05D007219 ORTHO05D008995 9.2e-57 224.2 154 70.1
Actinidia07878 Actinidia chinensis HOM05D007219 ORTHO05D008995 1.6e-56 223.4 170 65.9
AUR62017530 Chenopodium quinoa HOM05D007219 ORTHO05D008995 5.1e-55 218.4 255 47.5
COL.COLO4_04268 Corchorus olitorius HOM05D007219 ORTHO05D008995 5.1e-55 218.4 149 70.5
QL08p028923 Quercus lobata HOM05D007219 ORTHO05D008995 3.1e-52 209.1 342 37.7
Os03g0194400 Oryza sativa ssp. japonica HOM05D007219 ORTHO05D008995 4.0e-52 208.8 176 59.1
Ca_16365_v3 Cicer arietinum L. HOM05D007219 ORTHO05D008995 2.6e-51 206.1 121 84.3
Dinv07849 Davidia involucrata HOM05D007219 ORTHO05D008995 3.4e-51 205.7 143 67.8
VMungo0540G0477 Vigna mungo HOM05D007219 ORTHO05D008995 4.4e-51 205.3 205 56.1
MBI16_g42309_MAGBIO Magnolia biondii HOM05D007219 ORTHO05D008995 1.7e-50 203.4 173 59.5
SGA_v2.0_scaffold73G24522 Striga asiatica HOM05D007219 ORTHO05D008995 3.7e-50 202.2 159 61.0
SMO115G0308 Selaginella moellendorffii HOM05D007219 ORTHO05D008995 6.4e-50 201.4 170 58.2
EL10Ac9g22747 Beta vulgaris HOM05D007219 ORTHO05D008995 6.0e-48 194.9 194 54.6
Zm00001eb401150 Zea mays HOM05D007219 ORTHO05D008995 2.3e-47 193.0 157 58.6
FAN02G0754 Fragaria x ananassa HOM05D007219 ORTHO05D008995 3.3e-46 189.1 197 52.8
Mapoly0089s0028 Marchantia polymorpha HOM05D007219 ORTHO05D008995 1.5e-43 180.3 169 52.1
ClCG02G002620 Citrullus lanatus HOM05D007219 ORTHO05D008995 1.7e-42 176.8 137 63.5
Ah.14g082820 Amaranthus hybridus HOM05D007219 ORTHO05D008995 9.3e-41 171.0 145 61.4
Sc21g0000880 Simmondsia chinensis HOM05D007219 ORTHO05D008995 2.7e-40 169.5 110 72.7
Cfa014252 Carpinus fangiana HOM05D007219 ORTHO05D008995 1.5e-38 163.7 137 57.7
AUR62015074 Chenopodium quinoa HOM05D007219 ORTHO05D008995 4.3e-38 162.2 136 59.6
MCO15G116 Micromonas commoda HOM05D007219 ORTHO05D008995 2.4e-33 146.4 171 48.0
Rhsim06G0172900 Rhododendron simsii HOM05D007219 ORTHO05D008995 6.0e-32 141.7 214 42.5
CBR_g31837 Chara braunii HOM05D007219 ORTHO05D008995 2.0e-27 126.7 269 32.7
Nitab4.5_0002877g0050 Nicotiana tabacum HOM05D007219 ORTHO05D008995 3.8e-26 122.5 94 66.0
SEGI_01956 Sequoiadendron giganteum HOM05D007219 ORTHO05D008995 9.3e-25 117.9 80 66.2
MD17G1111700 Malus domestica HOM05D007219 ORTHO05D008995 6.0e-24 115.2 111 53.2
CSS0035148 Camellia sinensis var. sinensis HOM05D007219 ORTHO05D008995 2.8e-21 106.3 85 67.1
Thhalv10003074m.g Eutrema salsugineum HOM05D007219 ORTHO05D008995 1.3e-15 87.4 114 45.6
AagrBONN_evm.TU.Sc2ySwM_362.1409 Anthoceros agrestis HOM05D007219 ORTHO05D008995 1.5e-14 84.0 129 37.2
MD17G1111600 Malus domestica HOM05D007219 ORTHO05D008995 3.3e-14 82.8 72 59.7
PRCOL_00004041 Prasinoderma coloniale HOM05D007219 ORTHO05D008995 3.1e-12 76.3 164 32.3
Actinidia09773 Actinidia chinensis HOM05D007219 ORTHO05D008995 1.7e-10 70.5 52 59.6
Cre03.g184151 Chlamydomonas reinhardtii HOM05D007219 ORTHO05D008995 3.8e-10 69.3 99 42.4
Oeu027288.1 Olea europaea HOM05D007219 ORTHO05D008995 3.3e-06 56.2 49 57.1


User provided reference genes

Program Settings