Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g102360 Pisum sativum HOM05D006138 ORTHO05D007778 4.0e-218 761.1 389 100.0
Ca_16395_v3 Cicer arietinum L. HOM05D006138 ORTHO05D007778 2.7e-153 545.8 388 74.5
Lj6g0009885 Lotus japonicus HOM05D006138 ORTHO05D007778 2.8e-134 482.6 401 64.8
Glyma.11G255500 Glycine max HOM05D006138 ORTHO05D007778 7.1e-122 441.4 403 60.0
Phvul.001G267400 Phaseolus vulgaris HOM05D006138 ORTHO05D007778 1.6e-113 413.7 388 59.8
VMungo1383G1063 Vigna mungo HOM05D000127 ORTHO05D000243 3.5e-113 412.5 397 57.7
TPR.G24162 Trifolium pratense HOM05D006138 ORTHO05D007778 4.6e-105 385.6 280 74.3
arahy.Tifrunner.gnm1.ann1.3M33GA Arachis hypogaea HOM05D006138 ORTHO05D007778 4.3e-103 379.0 403 54.3
arahy.Tifrunner.gnm1.ann1.HYZ2KB Arachis hypogaea HOM05D006138 ORTHO05D007778 1.4e-101 374.0 403 53.6
Cfa014952 Carpinus fangiana HOM05D006138 ORTHO05D007778 6.2e-94 348.6 409 48.2
Lalb_Chr23g0278421 Lupinus albus HOM05D006138 ORTHO05D007778 1.0e-91 341.3 403 49.6
CiPaw.02G065100 Carya illinoinensis HOM05D006138 ORTHO05D007778 1.2e-89 334.3 374 47.9
Thecc.04G198400 Theobroma cacao HOM05D006138 ORTHO05D007778 1.6e-89 334.0 422 44.3
Cpa.g.sc83.29 Carica papaya HOM05D006138 ORTHO05D007778 5.7e-87 325.5 397 45.3
MD04G1014100 Malus domestica HOM05D006138 ORTHO05D007778 9.6e-87 324.7 385 44.2
Gohir.A05G323100 Gossypium hirsutum HOM05D006138 ORTHO05D007778 3.7e-86 322.8 427 43.6
Gorai.009G350500 Gossypium raimondii HOM05D006138 ORTHO05D007778 5.3e-85 318.9 427 43.3
CANSAT78G1344 Cannabis sativa HOM05D006138 ORTHO05D007778 1.0e-83 314.7 395 45.8
CANSAT78G2425 Cannabis sativa HOM05D006138 ORTHO05D007778 1.0e-83 314.7 395 45.8
Gohir.D05G326000 Gossypium hirsutum HOM05D006138 ORTHO05D007778 2.9e-83 313.2 427 42.9
Dinv27208 Davidia involucrata HOM05D006138 ORTHO05D007778 1.6e-81 307.4 404 42.3
TWI09G0334 Tripterygium wilfordii HOM05D006138 ORTHO05D007778 1.0e-80 304.7 397 42.8
TAR362G0162 Trochodendron aralioides HOM05D006138 ORTHO05D007778 1.8e-80 303.9 410 41.2
TWI53G0419 Tripterygium wilfordii HOM05D006138 ORTHO05D007778 2.3e-80 303.5 387 45.0
Manes.15G055900 Manihot esculenta HOM05D006138 ORTHO05D007778 3.0e-80 303.1 349 46.7
THA.LOC104804805 Tarenaya hassleriana HOM05D006138 ORTHO05D007778 4.3e-79 299.3 402 41.3
Potri.001G317900 Populus trichocarpa HOM05D006138 ORTHO05D007778 9.7e-79 298.1 402 41.0
Actinidia38756 Actinidia chinensis HOM05D006138 ORTHO05D007778 6.3e-78 295.4 402 41.5
CsaV3_3G010820 Cucumis sativus L. HOM05D006138 ORTHO05D007778 8.2e-78 295.0 394 41.1
Nn1g07955 Nelumbo nucifera HOM05D006138 ORTHO05D007778 8.2e-78 295.0 401 40.4
Atru.chr4.1604 Acer truncatum HOM05D006138 ORTHO05D007778 5.3e-77 292.4 366 44.5
GSVIVG01020999001 Vitis vinifera HOM05D006138 ORTHO05D007778 6.9e-77 292.0 400 42.0
COL.COLO4_20197 Corchorus olitorius HOM05D006138 ORTHO05D007778 3.4e-76 289.7 402 41.5
AL3G38900 Arabidopsis lyrata HOM05D006138 ORTHO05D007778 5.0e-75 285.8 396 41.7
DCAR_026640 Daucus carota HOM05D006138 ORTHO05D007778 5.0e-75 285.8 397 40.6
Cc03_g08330 Coffea canephora HOM05D006138 ORTHO05D007778 6.5e-75 285.4 409 38.9
Carub.0003s2421 Capsella rubella HOM05D006138 ORTHO05D007778 2.5e-74 283.5 395 40.3
Glyma.18G001700 Glycine max HOM05D006138 ORTHO05D007778 3.6e-73 279.6 241 63.1
ClCG05G003180 Citrullus lanatus HOM05D006138 ORTHO05D007778 6.1e-73 278.9 380 41.1
Aa31LG8G10490 Aethionema arabicum HOM05D006138 ORTHO05D007778 2.3e-72 276.9 406 39.7
Sp3g21610 Schrenkiella parvula HOM05D006138 ORTHO05D007778 2.5e-71 273.5 401 39.4
Sed0019269 Sechium edule HOM05D006138 ORTHO05D007778 7.4e-71 271.9 390 39.5
QL10p052654 Quercus lobata HOM05D006138 ORTHO05D007778 5.3e-69 265.8 528 35.6
BcaC06g35587 Brassica carinata HOM05D006138 ORTHO05D007778 1.5e-68 264.2 395 38.2
C07p13230 Brassica napus HOM05D006138 ORTHO05D007778 1.5e-68 264.2 395 38.2
A07p08490 Brassica napus HOM05D006138 ORTHO05D007778 5.9e-68 262.3 395 39.0
vmacro15557 Vaccinium macrocarpon HOM05D006138 ORTHO05D007778 6.5e-67 258.8 404 36.6
AT3G23910 Arabidopsis thaliana HOM05D006138 ORTHO05D007778 8.5e-67 258.5 407 37.8
Lj6A392G25 Lonicera japonica HOM05D006138 ORTHO05D007778 1.9e-66 257.3 438 34.0
Oeu025031.1 Olea europaea HOM05D006138 ORTHO05D007778 3.2e-66 256.5 412 36.9
BolC7t41815H Brassica oleracea HOM05D006138 ORTHO05D007778 1.2e-65 254.6 402 37.3
BraA07t28634Z Brassica rapa HOM05D006138 ORTHO05D007778 1.2e-65 254.6 402 37.6
Sabra16G0201200 Salix brachista HOM05D006138 ORTHO05D007778 1.2e-65 254.6 508 33.7
Sc13g0000300 Simmondsia chinensis HOM05D006138 ORTHO05D007778 2.7e-65 253.4 398 35.9
Eucgr.H00039 Eucalyptus grandis HOM05D006138 ORTHO05D007778 1.0e-64 251.5 351 39.6
Lsat_1_v5_gn_6_60661 Lactuca sativa HOM05D006138 ORTHO05D007778 2.3e-64 250.4 420 35.2
BcaB06g26554 Brassica carinata HOM05D006138 ORTHO05D007778 1.1e-63 248.1 395 37.2
RhsimUnG0035600 Rhododendron simsii HOM05D006138 ORTHO05D007778 4.4e-63 246.1 535 31.2
HanXRQChr07g0185891 Helianthus annuus HOM05D006138 ORTHO05D007778 1.7e-62 244.2 387 36.7
PSO017G1394 Papaver somniferum HOM05D006138 ORTHO05D007778 2.2e-62 243.8 402 35.3
PGR004G2157 Punica granatum HOM05D006138 ORTHO05D007778 2.2e-62 243.8 395 37.5
Lj6A407G21 Lonicera japonica HOM05D006138 ORTHO05D007778 1.1e-61 241.5 438 33.1
Peaxi162Scf00047g00230 Petunia axillaris HOM05D006138 ORTHO05D007778 1.1e-61 241.5 396 35.6
Thhalv10002763m.g Eutrema salsugineum HOM05D006138 ORTHO05D007778 1.8e-61 240.7 339 40.1
Aqoxy2G04005 Aquilegia oxysepala HOM05D006138 ORTHO05D007778 2.4e-61 240.4 404 36.4
Rhsim02G0060900 Rhododendron simsii HOM05D006138 ORTHO05D007778 3.1e-61 240.0 552 29.9
AT3G24255 Arabidopsis thaliana HOM05D006138 ORTHO05D007778 2.6e-60 236.9 414 36.2
Aqoxy360s001 Aquilegia oxysepala HOM05D006138 ORTHO05D007778 7.7e-60 235.3 371 37.5
Eucgr.L02926 Eucalyptus grandis HOM05D006138 ORTHO05D007778 6.5e-59 232.3 339 38.9
MSTRG.9735 Avicennia marina HOM05D006138 ORTHO05D007778 2.5e-58 230.3 405 34.3
Migut.G00745 Erythranthe guttata HOM05D006138 ORTHO05D007778 2.5e-58 230.3 396 34.3
Nitab4.5_0000401g0220 Nicotiana tabacum HOM05D006138 ORTHO05D007778 4.7e-57 226.1 407 33.9
vmacro15559 Vaccinium macrocarpon HOM05D006138 ORTHO05D007778 6.1e-57 225.7 407 34.2
AUR62020846 Chenopodium quinoa HOM05D006138 ORTHO05D007778 2.3e-56 223.8 358 38.0
SalBow8G0822 Salvia bowleyana HOM05D006138 ORTHO05D007778 7.5e-55 218.8 430 32.6
CDE05G2116 Ceratophyllum demersum HOM05D006138 ORTHO05D007778 1.3e-54 218.0 343 36.4
PGSC0003DMG400026422 Solanum tuberosum HOM05D006138 ORTHO05D007778 2.8e-54 216.9 369 35.2
SalBow8G2056 Salvia bowleyana HOM05D006138 ORTHO05D007778 3.7e-54 216.5 430 32.3
CAN.G1565.12 Capsicum annuum HOM05D006138 ORTHO05D007778 6.3e-54 215.7 359 34.8
CSS0014339 Camellia sinensis var. sinensis HOM05D006138 ORTHO05D007778 8.2e-54 215.3 260 43.1
Solyc09g092180.3 Solanum lycopersicum HOM05D006138 ORTHO05D007778 8.2e-54 215.3 402 32.8
Ah.04g149320 Amaranthus hybridus HOM05D006138 ORTHO05D007778 1.1e-53 214.9 379 34.8
Sopen09g035050 Solanum pennellii HOM05D006138 ORTHO05D007778 1.1e-53 214.9 402 33.1
CSS0015025 Camellia sinensis var. sinensis HOM05D006138 ORTHO05D007778 5.3e-53 212.6 260 43.1
PSO063G4547 Papaver somniferum HOM05D006138 ORTHO05D007778 1.3e-51 208.0 363 34.7
SGA_v2.0_scaffold19G08768 Striga asiatica HOM05D006138 ORTHO05D007778 6.5e-51 205.7 392 32.1
ECA233G3278 Erigeron canadensis HOM05D006138 ORTHO05D007778 1.1e-50 204.9 388 35.3
Nitab4.5_0003101g0010 Nicotiana tabacum HOM05D006138 ORTHO05D007778 4.7e-49 199.5 401 32.2
RcHm_v2.0_Chr4g0414021 Rosa chinensis HOM05D006138 ORTHO05D007778 1.0e-48 198.4 270 40.4
FvH4_4g13460 Fragaria vesca HOM05D006138 ORTHO05D007778 2.4e-45 187.2 282 40.8
Gohir.A12G078622 Gossypium hirsutum HOM05D006138 ORTHO05D007778 5.4e-45 186.0 282 40.1
FAN22G1553 Fragaria x ananassa HOM05D006138 ORTHO05D007778 1.2e-44 184.9 282 40.8
FAN12G1205 Fragaria x ananassa HOM05D006138 ORTHO05D007778 5.9e-44 182.6 282 40.1
EL10Ac3g07466 Beta vulgaris HOM05D006138 ORTHO05D007778 2.2e-43 180.6 351 33.0
HPP92_023190 Vanilla planifolia HOM05D006138 ORTHO05D007778 1.5e-42 177.9 349 33.5
AUR62018570 Chenopodium quinoa HOM05D006138 ORTHO05D007778 1.9e-42 177.6 352 33.5
Ciclev10005758m.g Citrus clementina HOM05D006138 ORTHO05D007778 1.8e-40 171.0 170 51.8
Haze_11642 Corylus avellana HOM05D006138 ORTHO05D007778 1.8e-40 171.0 374 34.8
Os04g0379800 Oryza sativa ssp. japonica HOM05D006138 ORTHO05D007778 2.3e-40 170.6 337 33.8
Prupe.1G161100 Prunus persica HOM05D006138 ORTHO05D007778 8.3e-38 162.2 242 38.0
Gohir.D12G210200 Gossypium hirsutum HOM05D006138 ORTHO05D007778 6.1e-33 146.0 246 39.0
Hma1.2p1_0017F.1_g011170 Hydrangea macrophylla HOM05D006138 ORTHO05D007778 1.4e-32 144.8 234 38.9
MELO3C006299.2 Cucumis melo HOM05D006138 ORTHO05D007778 6.4e-30 136.0 247 34.0
unitig_37.g12032 Utricularia gibba HOM05D006138 ORTHO05D007778 1.4e-29 134.8 364 28.3
Zm00001eb085830 Zea mays HOM05D006138 ORTHO05D007778 3.5e-28 130.2 400 28.8
Duzib268G1255 Durio zibethinus HOM05D006138 ORTHO05D007778 7.8e-28 129.0 124 52.4
Oeu025032.1 Olea europaea HOM05D006138 ORTHO05D007778 3.3e-26 123.6 131 45.8
Hund24401 Selenicereus undatus HOM05D006138 ORTHO05D007778 1.8e-24 117.9 248 31.9
FAN07G2199 Fragaria x ananassa HOM05D006138 ORTHO05D007778 8.3e-22 109.0 242 33.1
Phvul.001G135400 Phaseolus vulgaris HOM05D006138 ORTHO05D007778 1.4e-21 108.2 98 59.2
RcHm_v2.0_Chr4g0414071 Rosa chinensis HOM05D006138 ORTHO05D007778 3.2e-21 107.1 126 44.4
Duzib268G0147 Durio zibethinus HOM05D006138 ORTHO05D007778 1.9e-13 81.3 103 41.7
Duzib268G0476 Durio zibethinus HOM05D006138 ORTHO05D007778 1.9e-13 81.3 103 41.7
Nn1g00061 Nelumbo nucifera HOM05D006138 ORTHO05D007778 1.9e-13 81.3 102 39.2
Pp3c12_25780 Physcomitrium patens HOM05D058747 ORTHO05D007778 3.2e-13 80.5 276 21.7
Pp3c4_4010 Physcomitrium patens HOM05D058747 ORTHO05D007778 1.2e-12 78.6 251 22.7
Actinidia16488 Actinidia chinensis HOM05D006138 ORTHO05D007778 5.1e-11 73.2 84 39.3
Mapoly0008s0044 Marchantia polymorpha HOM05D006138 ORTHO05D007778 5.1e-11 73.2 414 21.3
FAN17G0457 Fragaria x ananassa HOM05D006138 ORTHO05D007778 3.3e-10 70.5 108 37.0
Hund29337 Selenicereus undatus HOM05D006138 ORTHO05D007778 2.3e-08 64.3 55 49.1
Hund29338 Selenicereus undatus HOM05D006138 ORTHO05D007778 2.3e-08 64.3 55 49.1
RcHm_v2.0_Chr4g0419401 Rosa chinensis HOM05D006138 ORTHO05D007778 3.4e-07 60.5 79 40.5
Nitab4.5_0001652g0120 Nicotiana tabacum HOM05D006138 ORTHO05D007778 9.9e-07 58.9 194 27.3


User provided reference genes

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