Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g098840 Pisum sativum HOM05D001108 ORTHO05D005418 3.8e-109 398.3 217 100.0
Psat4g001880 Pisum sativum HOM05D001108 ORTHO05D005418 7.8e-62 241.1 133 92.5
Psat5g097760 Pisum sativum HOM05D002292 ORTHO05D005418 1.2e-57 227.3 132 89.4
Medtr1g066930 Medicago truncatula HOM05D001108 ORTHO05D005418 1.3e-40 170.6 139 69.1
Medtr0004s0220 Medicago truncatula HOM05D001108 ORTHO05D005418 1.1e-36 157.5 139 67.6
VMungo1127G1775 Vigna mungo HOM05D001108 ORTHO05D005418 1.8e-34 150.2 136 59.6
Phvul.011G114100 Phaseolus vulgaris HOM05D001108 ORTHO05D005418 4.5e-33 145.6 136 59.6
Ca_20056_v3 Cicer arietinum L. HOM05D001108 ORTHO05D005418 7.6e-33 144.8 143 65.7
Lalb_Chr03g0029441 Lupinus albus HOM05D001108 ORTHO05D005418 8.4e-32 141.4 134 58.2
Glyma.12G112900 Glycine max HOM05D001108 ORTHO05D005418 5.1e-29 132.1 136 55.9
Lj3g0011439 Lotus japonicus HOM05D001108 ORTHO05D005418 1.5e-28 130.6 139 56.8
QL08p038694 Quercus lobata HOM05D001108 ORTHO05D005418 1.9e-28 130.2 145 55.2
arahy.Tifrunner.gnm1.ann1.PPEG78 Arachis hypogaea HOM05D001108 ORTHO05D005418 5.7e-28 128.6 146 54.8
arahy.Tifrunner.gnm1.ann1.SGC5R3 Arachis hypogaea HOM05D001108 ORTHO05D005418 9.6e-28 127.9 143 55.2
MD17G1240700 Malus domestica HOM05D001108 ORTHO05D005418 1.6e-27 127.1 103 62.1
Atru.chr6.2997 Acer truncatum HOM05D001108 ORTHO05D005418 2.1e-27 126.7 142 54.9
CiPaw.04G125800 Carya illinoinensis HOM05D001108 ORTHO05D005418 2.1e-27 126.7 143 52.4
Prupe.3G137500 Prunus persica HOM05D001108 ORTHO05D005418 2.1e-27 126.7 149 52.3
MD09G1247800 Malus domestica HOM05D001108 ORTHO05D005418 3.7e-27 125.9 104 62.5
arahy.Tifrunner.gnm1.ann1.85LIYI Arachis hypogaea HOM05D001108 ORTHO05D005418 8.2e-27 124.8 148 54.7
MELO3C000760.2 Cucumis melo HOM05D001108 ORTHO05D005418 1.1e-26 124.4 97 66.0
arahy.Tifrunner.gnm1.ann1.S0UG05 Arachis hypogaea HOM05D001108 ORTHO05D005418 1.4e-26 124.0 143 54.5
CsaV3_6G012940 Cucumis sativus L. HOM05D001108 ORTHO05D005418 1.4e-26 124.0 97 66.0
CsaV3_6G013000 Cucumis sativus L. HOM05D001108 ORTHO05D005418 1.4e-26 124.0 125 57.6
Haze_21052 Corylus avellana HOM05D001108 ORTHO05D001619 5.3e-26 122.1 149 49.7
Cpa.g.sc34.160 Carica papaya HOM05D001108 ORTHO05D005418 1.2e-25 120.9 143 49.7
EL10Ac9g20764 Beta vulgaris HOM05D001108 ORTHO05D005418 1.5e-25 120.6 90 63.3
vmacro12300 Vaccinium macrocarpon HOM05D001108 ORTHO05D005418 3.4e-25 119.4 116 54.3
CANSAT80G2367 Cannabis sativa HOM05D001108 ORTHO05D005418 7.6e-25 118.2 134 53.0
Sc21g0002830 Simmondsia chinensis HOM05D001108 ORTHO05D005418 7.6e-25 118.2 125 52.8
Cpa.g.sc34.159 Carica papaya HOM05D001108 ORTHO05D005418 1.0e-24 117.9 140 47.1
RcHm_v2.0_Chr7g0232111 Rosa chinensis HOM05D001108 ORTHO05D005418 1.0e-24 117.9 145 48.3
EL10Ac4g08320 Beta vulgaris HOM05D001108 ORTHO05D005418 1.3e-24 117.5 123 53.7
AUR62019549 Chenopodium quinoa HOM05D001108 ORTHO05D005418 1.3e-24 117.5 141 49.6
ClCG02G017630 Citrullus lanatus HOM05D001108 ORTHO05D005418 1.3e-24 117.5 143 49.0
Ciclev10013903m.g Citrus clementina HOM05D001108 ORTHO05D005418 1.3e-24 117.5 144 49.3
COL.COLO4_33977 Corchorus olitorius HOM05D001108 ORTHO05D005418 1.7e-24 117.1 116 56.9
Manes.13G146800 Manihot esculenta HOM05D001108 ORTHO05D005418 1.7e-24 117.1 145 50.3
Ah.04g164360 Amaranthus hybridus HOM05D001108 ORTHO05D005418 3.8e-24 115.9 113 55.8
AUR62036092 Chenopodium quinoa HOM05D001108 ORTHO05D005418 3.8e-24 115.9 128 51.6
Duzib128G0360 Durio zibethinus HOM05D001108 ORTHO05D005418 3.8e-24 115.9 101 54.5
Ah.01g015170 Amaranthus hybridus HOM05D001108 ORTHO05D005418 5.0e-24 115.5 89 61.8
HanXRQChr06g0171321 Helianthus annuus HOM05D001108 ORTHO05D005418 5.0e-24 115.5 143 48.3
CSS0002926 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 6.5e-24 115.2 137 48.2
Gohir.D09G124300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 8.5e-24 114.8 103 55.3
Sed0006413 Sechium edule HOM05D001108 ORTHO05D005418 8.5e-24 114.8 144 49.3
Gorai.006G143100 Gossypium raimondii HOM05D001108 ORTHO05D005418 1.1e-23 114.4 103 55.3
Hund07929 Selenicereus undatus HOM05D001108 ORTHO05D005418 1.1e-23 114.4 126 52.4
Duzib093G1006 Durio zibethinus HOM05D001108 ORTHO05D005418 1.4e-23 114.0 109 54.1
Gohir.A09G128300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 1.4e-23 114.0 133 51.1
CSS0044059 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 1.9e-23 113.6 137 48.2
CSS0042510 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 2.5e-23 113.2 137 48.2
Thecc.05G172000 Theobroma cacao HOM05D001108 ORTHO05D005418 2.5e-23 113.2 110 50.9
AUR62002952 Chenopodium quinoa HOM05D001108 ORTHO05D005418 3.2e-23 112.8 74 73.0
TAR627G0387 Trochodendron aralioides HOM05D001108 ORTHO05D005418 3.2e-23 112.8 117 53.8
HPP92_003131 Vanilla planifolia HOM05D001108 ORTHO05D005418 4.2e-23 112.5 104 52.9
Nn1g06569 Nelumbo nucifera HOM05D001108 ORTHO05D005418 5.5e-23 112.1 116 52.6
Potri.013G131800 Populus trichocarpa HOM05D001108 ORTHO05D005418 5.5e-23 112.1 151 47.7
Rhsim06G0142500 Rhododendron simsii HOM05D001108 ORTHO05D005418 9.3e-23 111.3 144 47.2
TWI75G0959 Tripterygium wilfordii HOM05D001108 ORTHO05D005418 1.6e-22 110.5 153 45.8
PSO782G4551 Papaver somniferum HOM05D001108 ORTHO05D005418 2.1e-22 110.2 121 50.4
Potri.019G100500 Populus trichocarpa HOM05D001108 ORTHO05D005418 2.1e-22 110.2 114 52.6
Sabra19G0110800 Salix brachista HOM05D001108 ORTHO05D005418 2.7e-22 109.8 114 52.6
Sabra19G0112200 Salix brachista HOM05D001108 ORTHO05D005418 2.7e-22 109.8 114 52.6
Nn1g04079 Nelumbo nucifera HOM05D001108 ORTHO05D005418 3.6e-22 109.4 77 64.9
SalBow1G0161 Salvia bowleyana HOM05D001108 ORTHO05D005418 4.6e-22 109.0 104 52.9
CSS0039738 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 7.9e-22 108.2 146 44.5
Sabra13G0111300 Salix brachista HOM05D001108 ORTHO05D005418 7.9e-22 108.2 151 47.0
HanXRQChr06g0169711 Helianthus annuus HOM05D001108 ORTHO05D005418 1.8e-21 107.1 143 46.2
Migut.C01348 Erythranthe guttata HOM05D001108 ORTHO05D005418 2.3e-21 106.7 136 45.6
FAN04G2154 Fragaria x ananassa HOM05D001108 ORTHO05D005418 2.3e-21 106.7 149 47.0
PSO478G1555 Papaver somniferum HOM05D001108 ORTHO05D005418 3.9e-21 105.9 148 45.3
BcaB03g16863 Brassica carinata HOM05D001108 ORTHO05D005418 5.1e-21 105.5 94 56.4
Peaxi162Scf00132g00233 Petunia axillaris HOM05D001229 ORTHO05D005418 8.7e-21 104.8 145 44.8
SGA_v2.0_scaffold92G28314 Striga asiatica HOM05D001108 ORTHO05D005418 8.7e-21 104.8 125 50.4
PSO541G4613 Papaver somniferum HOM05D001108 ORTHO05D005418 1.1e-20 104.4 134 45.5
PSO675G3815 Papaver somniferum HOM05D001108 ORTHO05D005418 1.1e-20 104.4 134 45.5
THA.LOC104824701 Tarenaya hassleriana HOM05D001108 ORTHO05D005418 1.9e-20 103.6 85 60.0
BcaC06g36761 Brassica carinata HOM05D001108 ORTHO05D005418 3.3e-20 102.8 79 63.3
C07p00210 Brassica napus HOM05D001108 ORTHO05D005418 3.3e-20 102.8 116 50.9
BolC7t40471H Brassica oleracea HOM05D001108 ORTHO05D005418 3.3e-20 102.8 79 63.3
HanXRQChr06g0171311 Helianthus annuus HOM05D001108 ORTHO05D005418 3.3e-20 102.8 144 48.6
Solyc07g054190.4 Solanum lycopersicum HOM05D001108 ORTHO05D005418 3.3e-20 102.8 111 47.7
Sopen07g028120 Solanum pennellii HOM05D001108 ORTHO05D005418 3.3e-20 102.8 111 48.6
AT2G20690 Arabidopsis thaliana HOM05D001108 ORTHO05D005418 4.3e-20 102.4 140 46.4
CARHR111330 Cardamine hirsuta HOM05D001108 ORTHO05D005418 4.3e-20 102.4 127 47.2
unitig_60.g25406 Utricularia gibba HOM05D001108 ORTHO05D005418 5.7e-20 102.1 131 44.3
unitig_88.g27587 Utricularia gibba HOM05D001108 ORTHO05D005418 5.7e-20 102.1 131 44.3
AL3G53780 Arabidopsis lyrata HOM05D001108 ORTHO05D005418 7.4e-20 101.7 79 63.3
Carub.0003s3520 Capsella rubella HOM05D001108 ORTHO05D005418 9.7e-20 101.3 77 64.9
FvH4_5g33380 Fragaria vesca HOM05D001108 ORTHO05D005418 9.7e-20 101.3 148 47.3
FAN18G0425 Fragaria x ananassa HOM05D001108 ORTHO05D005418 9.7e-20 101.3 148 47.3
Lsat_1_v5_gn_3_37280 Lactuca sativa HOM05D001108 ORTHO05D005418 9.7e-20 101.3 128 47.7
PGR142G4253 Punica granatum HOM05D001108 ORTHO05D005418 1.3e-19 100.9 136 47.1
Eucgr.K01017 Eucalyptus grandis HOM05D001108 ORTHO05D005418 2.8e-19 99.8 108 52.8
MSTRG.5628 Avicennia marina HOM05D001108 ORTHO05D005418 3.7e-19 99.4 149 41.6
A07p00070 Brassica napus HOM05D001108 ORTHO05D005418 3.7e-19 99.4 81 64.2
BraA07t27798Z Brassica rapa HOM05D001108 ORTHO05D005418 3.7e-19 99.4 81 64.2
Haze_13157 Corylus avellana HOM05D001108 ORTHO05D005418 3.7e-19 99.4 66 68.2
Thhalv10002078m.g Eutrema salsugineum HOM05D001108 ORTHO05D005418 3.7e-19 99.4 136 46.3
Lsat_1_v5_gn_4_70021 Lactuca sativa HOM05D001108 ORTHO05D005418 8.2e-19 98.2 105 51.4
Medtr4g063470 Medicago truncatula HOM05D001108 ORTHO05D005418 8.2e-19 98.2 64 76.6
Nitab4.5_0000512g0050 Nicotiana tabacum HOM05D001108 ORTHO05D005418 2.4e-18 96.7 98 46.9
AUR62007757 Chenopodium quinoa HOM05D001108 ORTHO05D005418 3.1e-18 96.3 66 71.2
Nitab4.5_0004071g0020 Nicotiana tabacum HOM05D001108 ORTHO05D005418 3.1e-18 96.3 98 46.9
Actinidia11036 Actinidia chinensis HOM05D001108 ORTHO05D005418 5.3e-18 95.5 66 66.7
Cfa017142 Carpinus fangiana HOM05D001108 ORTHO05D005418 5.3e-18 95.5 66 68.2
SEGI_26411 Sequoiadendron giganteum HOM05D001108 ORTHO05D005418 6.9e-18 95.1 77 59.7
Dinv26419 Davidia involucrata HOM05D001108 ORTHO05D005418 9.1e-18 94.7 66 65.2
Dinv23643 Davidia involucrata HOM05D001108 ORTHO05D005418 1.2e-17 94.4 66 65.2
Pp3c2_19260 Physcomitrium patens HOM05D001108 ORTHO05D005418 1.2e-17 94.4 74 63.5
ATR1096G056 Amborella trichopoda HOM05D001108 ORTHO05D005418 1.5e-17 94.0 75 64.0
CAN.G248.11 Capsicum annuum HOM05D001108 ORTHO05D005418 5.9e-17 92.0 74 55.4
DCAR_013007 Daucus carota HOM05D001108 ORTHO05D005418 5.9e-17 92.0 67 68.7
Cc05_g07130 Coffea canephora HOM05D001108 ORTHO05D005418 1.0e-16 91.3 66 60.6
CAN.G248.33 Capsicum annuum HOM05D001108 ORTHO05D005418 2.2e-16 90.1 140 39.3
CAN.G248.16 Capsicum annuum HOM05D001108 ORTHO05D005418 3.8e-16 89.4 74 54.1
CAN.G851.1 Capsicum annuum HOM05D001108 ORTHO05D005418 3.8e-16 89.4 74 54.1
CBR_g36747 Chara braunii HOM05D001108 ORTHO05D005418 3.8e-16 89.4 85 57.6
SMO137G0361 Selaginella moellendorffii HOM05D001108 ORTHO05D005418 8.5e-16 88.2 74 60.8
Sp3g33940 Schrenkiella parvula HOM05D001108 ORTHO05D005418 1.4e-15 87.4 66 66.7
CDE02G0464 Ceratophyllum demersum HOM05D001108 ORTHO05D005418 2.5e-15 86.7 66 62.1
CDE09G0563 Ceratophyllum demersum HOM05D001108 ORTHO05D005418 2.5e-15 86.7 66 62.1
Aqoxy1G02437 Aquilegia oxysepala HOM05D001108 ORTHO05D005418 3.2e-15 86.3 114 43.9
C09p15330 Brassica napus HOM05D001108 ORTHO05D005418 3.2e-15 86.3 69 62.3
Os12g0541000 Oryza sativa ssp. japonica HOM05D001108 ORTHO05D005418 9.4e-15 84.7 132 42.4
Zm00001eb410210 Zea mays HOM05D001108 ORTHO05D005418 1.2e-14 84.3 123 43.1
AagrBONN_evm.TU.Sc2ySwM_228.5414 Anthoceros agrestis HOM05D001108 ORTHO05D005418 7.9e-14 81.6 74 58.1
PGSC0003DMG400018350 Solanum tuberosum HOM05D001108 ORTHO05D005418 7.9e-14 81.6 66 56.1
Zm00001eb410410 Zea mays HOM05D001108 ORTHO05D005418 7.9e-14 81.6 92 50.0
Mapoly0026s0114 Marchantia polymorpha HOM05D001108 ORTHO05D005418 1.0e-13 81.3 88 48.9
ECA246G0340 Erigeron canadensis HOM05D001108 ORTHO05D005418 1.4e-13 80.9 67 59.7
Aqoxy1G02436 Aquilegia oxysepala HOM05D001108 ORTHO05D005418 2.3e-13 80.1 50 78.0
Lj1P722T15 Lonicera japonica HOM05D001108 ORTHO05D005418 1.1e-12 77.8 50 72.0
Sabra19G0110900 Salix brachista HOM05D001108 ORTHO05D005418 3.3e-12 76.3 116 42.2
CANSAT80G2295 Cannabis sativa HOM05D001108 ORTHO05D005418 6.3e-11 72.0 44 81.8
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 1.1e-10 71.2 77 50.6
CAN.G362.18 Capsicum annuum HOM05D001108 ORTHO05D005418 1.4e-10 70.9 87 41.4
Cfa014613 Carpinus fangiana HOM05D001108 ORTHO05D005418 2.4e-10 70.1 82 46.3
Lsat_1_v5_gn_8_150060 Lactuca sativa HOM05D001108 ORTHO05D005418 2.4e-10 70.1 65 52.3
MD09G1265300 Malus domestica HOM05D001108 ORTHO05D005418 4.1e-10 69.3 50 66.0
AagrBONN_evm.TU.Sc2ySwM_228.459 Anthoceros agrestis HOM05D001108 ORTHO05D005418 7.7e-09 65.1 75 46.7
RcHm_v2.0_Chr2g0153941 Rosa chinensis HOM05D001108 ORTHO05D005418 1.0e-08 64.7 49 69.4
BcaC04g22783 Brassica carinata HOM05D001108 ORTHO05D005418 2.9e-08 63.2 45 71.1
Cfa026241 Carpinus fangiana HOM05D001108 ORTHO05D005418 6.1e-06 55.5 98 38.8


User provided reference genes

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