Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g098160 Pisum sativum HOM05D005590 ORTHO05D007084 0.0e+00 1409.0 698 100.0
TPR.G21797 Trifolium pratense HOM05D005590 ORTHO05D007084 0.0e+00 1280.8 697 90.5
Medtr3g085640 Medicago truncatula HOM05D005590 ORTHO05D007084 0.0e+00 1257.3 697 89.5
Lj6g0026097 Lotus japonicus HOM05D005590 ORTHO05D007084 0.0e+00 1238.0 697 86.9
Glyma.11G248700 Glycine max HOM05D005590 ORTHO05D007084 0.0e+00 1200.3 696 84.6
Lalb_Chr19g0126761 Lupinus albus HOM05D005590 ORTHO05D007084 0.0e+00 1186.4 697 82.9
Phvul.001G260000 Phaseolus vulgaris HOM05D005590 ORTHO05D007084 0.0e+00 1173.3 697 83.4
VMungo1383G1779 Vigna mungo HOM05D005590 ORTHO05D007084 0.0e+00 1168.7 697 83.5
Glyma.05G146000 Glycine max HOM05D005590 ORTHO05D007084 0.0e+00 1156.7 698 81.1
CANSAT01G0321 Cannabis sativa HOM05D005590 ORTHO05D007084 0.0e+00 1147.1 697 80.2
Cpa.g.sc43.29 Carica papaya HOM05D005590 ORTHO05D007084 0.0e+00 1140.9 697 79.5
Ciclev10030703m.g Citrus clementina HOM05D005590 ORTHO05D007084 0.0e+00 1138.3 699 80.1
CiPaw.05G113900 Carya illinoinensis HOM05D005590 ORTHO05D007084 0.0e+00 1136.3 697 79.8
Manes.13G016500 Manihot esculenta HOM05D005590 ORTHO05D007084 0.0e+00 1135.2 697 79.8
Duzib248G1471 Durio zibethinus HOM05D005590 ORTHO05D007084 0.0e+00 1134.8 697 79.8
Thecc.02G275300 Theobroma cacao HOM05D005590 ORTHO05D007084 0.0e+00 1132.1 697 78.9
QL03p054580 Quercus lobata HOM05D005590 ORTHO05D007084 0.0e+00 1131.3 697 80.1
Sc11g0000610 Simmondsia chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1121.3 697 78.9
TAR629G0528 Trochodendron aralioides HOM05D005590 ORTHO05D007084 0.0e+00 1111.3 697 77.3
Cfa009321 Carpinus fangiana HOM05D005590 ORTHO05D007084 0.0e+00 1110.9 727 76.6
Cfa009347 Carpinus fangiana HOM05D005590 ORTHO05D007084 0.0e+00 1110.5 707 77.9
THA.LOC104807889 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 0.0e+00 1110.1 696 78.2
Ca_16478_v3 Cicer arietinum L. HOM05D005590 ORTHO05D007084 0.0e+00 1109.0 697 80.5
Eucgr.B03469 Eucalyptus grandis HOM05D005590 ORTHO05D007084 0.0e+00 1108.6 697 77.5
Gorai.012G175100 Gossypium raimondii HOM05D005590 ORTHO05D007084 0.0e+00 1108.6 697 77.6
Potri.008G177900 Populus trichocarpa HOM05D005590 ORTHO05D007084 0.0e+00 1108.6 697 78.3
Gohir.A04G138800 Gossypium hirsutum HOM05D005590 ORTHO05D007084 0.0e+00 1108.2 697 77.6
EL10Ac6g13455 Beta vulgaris HOM05D005590 ORTHO05D007084 0.0e+00 1107.4 697 78.2
AT1G67550 Arabidopsis thaliana HOM05D005590 ORTHO05D007084 0.0e+00 1106.7 697 78.6
CSS0010322 Camellia sinensis var. sinensis HOM05D005590 ORTHO05D007084 0.0e+00 1105.5 696 78.6
Gohir.D04G181700 Gossypium hirsutum HOM05D005590 ORTHO05D007084 0.0e+00 1105.5 697 77.6
Carub.0002s1389 Capsella rubella HOM05D005590 ORTHO05D007084 0.0e+00 1104.0 696 78.3
Aqoxy5G03486 Aquilegia oxysepala HOM05D005590 ORTHO05D007084 0.0e+00 1101.7 697 77.6
AL2G26220 Arabidopsis lyrata HOM05D005590 ORTHO05D007084 0.0e+00 1101.3 696 78.3
AUR62024147 Chenopodium quinoa HOM05D005590 ORTHO05D007084 0.0e+00 1100.9 697 77.5
Sp5g22560 Schrenkiella parvula HOM05D005590 ORTHO05D007084 0.0e+00 1098.6 696 77.9
Hund25444 Selenicereus undatus HOM05D005590 ORTHO05D007084 0.0e+00 1098.2 699 76.4
Haze_12376 Corylus avellana HOM05D005590 ORTHO05D007084 0.0e+00 1094.3 717 76.2
CARHR060120 Cardamine hirsuta HOM05D005590 ORTHO05D007084 0.0e+00 1093.6 696 77.6
GSVIVG01010360001 Vitis vinifera HOM05D005590 ORTHO05D007084 0.0e+00 1093.6 697 77.8
Hma1.2p1_1954F.1_g308890 Hydrangea macrophylla HOM05D005590 ORTHO05D007084 0.0e+00 1093.2 697 77.9
CSS0021341 Camellia sinensis var. sinensis HOM05D005590 ORTHO05D007084 0.0e+00 1092.4 696 77.6
PGR102G0567 Punica granatum HOM05D005590 ORTHO05D007084 0.0e+00 1092.0 698 76.9
Migut.K00707 Erythranthe guttata HOM05D005590 ORTHO05D007084 0.0e+00 1090.9 697 77.5
TWI36G0819 Tripterygium wilfordii HOM05D005590 ORTHO05D007084 0.0e+00 1090.9 697 76.5
TWI36G1126 Tripterygium wilfordii HOM05D005590 ORTHO05D007084 0.0e+00 1090.9 697 76.5
arahy.Tifrunner.gnm1.ann1.F3MU0V Arachis hypogaea HOM05D005590 ORTHO05D007084 0.0e+00 1090.5 700 78.4
Prupe.1G232300 Prunus persica HOM05D005590 ORTHO05D007084 0.0e+00 1089.7 697 77.0
Nn4g22391 Nelumbo nucifera HOM05D005590 ORTHO05D007084 0.0e+00 1088.9 696 76.4
PSO063G4664 Papaver somniferum HOM05D005590 ORTHO05D007084 0.0e+00 1088.9 696 76.3
Peaxi162Scf00128g00942 Petunia axillaris HOM05D005590 ORTHO05D007084 0.0e+00 1088.9 697 77.5
A02p14320 Brassica napus HOM05D005590 ORTHO05D007084 0.0e+00 1087.8 697 77.6
C02p23180 Brassica napus HOM05D005590 ORTHO05D007084 0.0e+00 1087.8 697 77.5
CDE08G0401 Ceratophyllum demersum HOM05D005590 ORTHO05D007084 0.0e+00 1087.8 697 76.3
BcaB05g24294 Brassica carinata HOM05D005590 ORTHO05D007084 0.0e+00 1087.4 696 77.3
BcaC03g14846 Brassica carinata HOM05D005590 ORTHO05D007084 0.0e+00 1087.4 697 77.5
FvH4_4g24160 Fragaria vesca HOM05D005590 ORTHO05D007084 0.0e+00 1087.4 698 76.1
ECA234G4696 Erigeron canadensis HOM05D005590 ORTHO05D003891 0.0e+00 1085.9 697 76.3
Sabra08G0135700 Salix brachista HOM05D005590 ORTHO05D007084 0.0e+00 1085.9 730 74.1
BraA02t06492Z Brassica rapa HOM05D005590 ORTHO05D007084 0.0e+00 1085.1 697 77.3
MELO3C011884.2 Cucumis melo HOM05D005590 ORTHO05D007084 0.0e+00 1085.1 697 76.5
Sopen05g010060 Solanum pennellii HOM05D005590 ORTHO05D007084 0.0e+00 1085.1 697 76.5
Dinv10985 Davidia involucrata HOM05D005590 ORTHO05D007084 0.0e+00 1084.7 685 78.0
Thhalv10018120m.g Eutrema salsugineum HOM05D005590 ORTHO05D007084 0.0e+00 1084.3 696 77.3
BolC2t08460H Brassica oleracea HOM05D005590 ORTHO05D007084 0.0e+00 1083.9 697 77.2
CsaV3_5G030450 Cucumis sativus L. HOM05D005590 ORTHO05D007084 0.0e+00 1083.9 697 76.6
Solyc05g014970.3 Solanum lycopersicum HOM05D005590 ORTHO05D007084 0.0e+00 1082.4 697 76.0
FAN07G0306 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1081.6 733 72.9
SHI17943 Sapria himalayana HOM05D005590 ORTHO05D007084 0.0e+00 1081.2 724 74.2
Ah.03g133910 Amaranthus hybridus HOM05D005590 ORTHO05D007084 0.0e+00 1080.1 729 74.3
Cc11_g16690 Coffea canephora HOM05D005590 ORTHO05D007084 0.0e+00 1077.8 697 76.2
Lj6C823G8 Lonicera japonica HOM05D005590 ORTHO05D007084 0.0e+00 1077.4 716 74.9
FAN22G2048 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1077.0 708 75.1
Actinidia33250 Actinidia chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1076.6 689 76.9
HanXRQChr12g0385371 Helianthus annuus HOM05D005590 ORTHO05D007084 1.9e-311 1072.0 696 75.9
RcHm_v2.0_Chr4g0430931 Rosa chinensis HOM05D005590 ORTHO05D007084 2.4e-311 1071.6 697 75.5
Aa31sc48G50 Aethionema arabicum HOM05D005590 ORTHO05D007084 7.2e-311 1070.1 703 76.2
MSTRG.7987 Avicennia marina HOM05D005590 ORTHO05D007084 1.6e-310 1068.9 697 75.5
Lsat_1_v5_gn_4_2961 Lactuca sativa HOM05D005590 ORTHO05D007084 3.6e-310 1067.8 685 77.4
SalBow2G1962 Salvia bowleyana HOM05D005590 ORTHO05D007084 3.6e-310 1067.8 697 75.2
FAN12G4158 Fragaria x ananassa HOM05D005590 ORTHO05D007084 4.7e-310 1067.4 729 72.6
Sed0016931 Sechium edule HOM05D005590 ORTHO05D007084 3.1e-309 1064.7 699 75.1
Rhsim12G0104500 Rhododendron simsii HOM05D005590 ORTHO05D007084 5.2e-309 1063.9 774 70.0
arahy.Tifrunner.gnm1.ann1.T6FRZY Arachis hypogaea HOM05D005590 ORTHO05D007084 9.8e-308 1059.7 700 77.1
Oeu019045.1 Olea europaea HOM05D005590 ORTHO05D007084 1.3e-307 1059.3 703 75.7
ClCG11G013850 Citrullus lanatus HOM05D005590 ORTHO05D007084 8.3e-307 1056.6 698 75.9
SGA_v2.0_scaffold9G04769 Striga asiatica HOM05D005590 ORTHO05D007084 8.6e-304 1046.6 704 74.6
Zm00001eb118150 Zea mays HOM05D005590 ORTHO05D007084 2.5e-303 1045.0 702 73.1
DCAR_031184 Daucus carota HOM05D005590 ORTHO05D007084 1.2e-302 1042.7 770 68.8
vmacro16128 Vaccinium macrocarpon HOM05D005590 ORTHO05D007084 2.1e-302 1042.0 826 65.5
AUR62005583 Chenopodium quinoa HOM05D005590 ORTHO05D007084 5.4e-298 1027.3 697 73.9
COL.COLO4_12817 Corchorus olitorius HOM05D005590 ORTHO05D007084 3.3e-295 1018.1 697 72.6
unitig_22.g6410 Utricularia gibba HOM05D005590 ORTHO05D007084 3.6e-294 1014.6 726 71.2
Ca_29988_v3 Cicer arietinum L. HOM05D005590 ORTHO05D007084 5.2e-293 1010.7 642 79.6
PSO782G2635 Papaver somniferum HOM05D005590 ORTHO05D007084 1.7e-288 995.7 639 75.0
Atru.chr11.2279 Acer truncatum HOM05D005590 ORTHO05D007084 5.4e-282 974.2 580 81.7
SMO117G0108 Selaginella moellendorffii HOM05D005590 ORTHO05D007084 1.4e-277 959.5 717 67.2
Pp3c24_5050 Physcomitrium patens HOM05D005590 ORTHO05D007084 2.4e-274 948.7 698 66.2
Sed0012865 Sechium edule HOM05D005590 ORTHO05D007084 3.5e-273 944.9 612 75.5
AagrBONN_evm.TU.Sc2ySwM_344.1264 Anthoceros agrestis HOM05D005590 ORTHO05D007084 8.1e-270 933.7 665 68.7
Mapoly0026s0042 Marchantia polymorpha HOM05D005590 ORTHO05D007084 2.4e-269 932.2 702 65.4
Nitab4.5_0003209g0020 Nicotiana tabacum HOM05D005590 ORTHO05D007084 5.8e-268 927.5 697 68.6
CBR_g46753 Chara braunii HOM05D005590 ORTHO05D007084 1.4e-261 906.4 712 63.8
MCO04G019 Micromonas commoda HOM05D005590 ORTHO05D007084 2.5e-258 895.6 715 63.6
PRCOL_00002215 Prasinoderma coloniale HOM05D005590 ORTHO05D007084 5.9e-252 874.4 704 62.1
ATR0686G208 Amborella trichopoda HOM05D005590 ORTHO05D007084 1.0e-251 873.6 698 64.2
HPP92_006206 Vanilla planifolia HOM05D005590 ORTHO05D007084 2.2e-235 819.3 543 73.5
CAN.G1178.7 Capsicum annuum HOM05D005590 ORTHO05D007084 3.3e-231 805.4 512 76.6
Nitab4.5_0000240g0180 Nicotiana tabacum HOM05D005590 ORTHO05D007084 1.1e-218 763.8 704 60.2
PGSC0003DMG400001246 Solanum tuberosum HOM05D005590 ORTHO05D007084 6.3e-214 748.0 514 71.4
MD13G1114900 Malus domestica HOM05D005590 ORTHO05D007084 6.5e-142 508.8 276 87.3
MD13G1115100 Malus domestica HOM05D005590 ORTHO05D007084 2.4e-104 384.0 286 68.2
SEGI_14306 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 1.2e-103 381.7 308 61.7
Thecc.01G288800 Theobroma cacao HOM05D005590 ORTHO05D007084 8.6e-94 349.0 194 86.6
THA.LOC104808470 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 3.7e-89 333.6 186 86.6
FAN17G0818 Fragaria x ananassa HOM05D005590 ORTHO05D007084 8.9e-83 312.4 268 60.4
CAN.G1862.1 Capsicum annuum HOM05D005590 ORTHO05D007084 7.6e-66 256.1 182 71.4
MD13G1114100 Malus domestica HOM05D005590 ORTHO05D007084 2.3e-62 244.6 135 83.0
MD13G1114500 Malus domestica HOM05D005590 ORTHO05D007084 1.1e-61 242.3 145 83.4
SEGI_06493 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 9.6e-53 212.6 136 76.5
MD16G1113300 Malus domestica HOM05D005590 ORTHO05D007084 2.0e-50 204.9 174 65.5
THA.LOC104807890 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 1.5e-45 188.7 111 83.8
SGA_v2.0_scaffold218G42496 Striga asiatica HOM05D005590 ORTHO05D007084 5.5e-40 170.2 117 72.6
Glyma.08G102966 Glycine max HOM05D005590 ORTHO05D007084 1.2e-34 152.5 83 83.1
Zm00001eb372290 Zea mays HOM05D005590 ORTHO05D007084 7.6e-34 149.8 94 76.6
Thecc.01G288900 Theobroma cacao HOM05D005590 ORTHO05D007084 6.5e-33 146.7 176 46.0
MBI11_g15881_MAGBIO Magnolia biondii HOM05D005590 ORTHO05D007084 1.5e-26 125.6 86 73.3
SEGI_08905 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 3.8e-25 120.9 76 76.3
HanXRQChr10g0279721 Helianthus annuus HOM05D005590 ORTHO05D007084 1.2e-23 115.9 86 65.1
Glyma.08G103032 Glycine max HOM05D005590 ORTHO05D007084 1.4e-19 102.4 67 73.1
Zm00001eb019970 Zea mays HOM05D005590 ORTHO05D007084 2.0e-18 98.6 68 67.6
Atru.chr11.2280 Acer truncatum HOM05D005590 ORTHO05D007084 2.6e-10 71.6 74 55.4
SEGI_03265 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 7.2e-08 63.5 42 76.2
MD16G1113700 Malus domestica HOM05D005590 ORTHO05D007084 2.3e-06 58.5 41 73.2
Lsat_1_v5_gn_2_31840 Lactuca sativa HOM05D005173 ORTHO05D006214 8.8e-06 56.6 76 40.8


User provided reference genes

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