Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g095960 Pisum sativum HOM05D000885 ORTHO05D001238 1.1e-75 286.6 141 100.0
Medtr7g109145 Medicago truncatula HOM05D000885 ORTHO05D001238 3.8e-41 171.8 130 71.5
TPR.G9642 Trifolium pratense HOM05D000885 ORTHO05D001238 1.6e-31 139.8 134 63.4
Glyma.03G217300 Glycine max HOM05D000885 ORTHO05D001238 7.9e-31 137.5 123 63.4
Glyma.19G213900 Glycine max HOM05D000885 ORTHO05D001238 1.1e-29 133.7 123 62.6
Phvul.001G210800 Phaseolus vulgaris HOM05D000885 ORTHO05D001238 5.9e-26 121.3 123 56.9
VMungo1383G1006 Vigna mungo HOM05D000885 ORTHO05D001238 5.5e-24 114.8 121 57.0
arahy.Tifrunner.gnm1.ann1.XYIS5G Arachis hypogaea HOM05D000885 ORTHO05D001238 4.6e-23 111.7 130 57.7
arahy.Tifrunner.gnm1.ann1.R5ECF0 Arachis hypogaea HOM05D000885 ORTHO05D001238 5.1e-22 108.2 127 58.3
Lj1g0016640 Lotus japonicus HOM05D000885 ORTHO05D001238 1.8e-19 99.8 88 63.6
Lalb_Chr15g0078391 Lupinus albus HOM05D000885 ORTHO05D001238 2.4e-19 99.4 85 64.7
Cfa005861 Carpinus fangiana HOM05D000885 ORTHO05D001238 4.5e-18 95.1 117 51.3
CiPaw.07G113400 Carya illinoinensis HOM05D000885 ORTHO05D001238 1.4e-14 83.6 129 44.2
QL12p028668 Quercus lobata HOM05D000885 ORTHO05D001238 2.3e-14 82.8 135 40.7
Sabra14G0093300 Salix brachista HOM05D000885 ORTHO05D001238 3.9e-14 82.0 125 45.6
COL.COLO4_23290 Corchorus olitorius HOM05D000885 ORTHO05D001238 1.5e-13 80.1 122 45.1
Potri.014G125500 Populus trichocarpa HOM05D000885 ORTHO05D001238 2.0e-13 79.7 124 43.5
Sabra02G0158100 Salix brachista HOM05D000885 ORTHO05D001238 1.3e-12 77.0 129 41.9
Potri.002G200500 Populus trichocarpa HOM05D000885 ORTHO05D001238 2.8e-12 75.9 124 41.9
MELO3C015955.2 Cucumis melo HOM05D000885 ORTHO05D001238 1.4e-11 73.6 119 42.9
ClCG09G005430 Citrullus lanatus HOM05D000885 ORTHO05D001238 1.8e-11 73.2 130 41.5
Haze_04988 Corylus avellana HOM05D000885 ORTHO05D001238 2.4e-11 72.8 94 50.0
Gohir.D11G117600 Gossypium hirsutum HOM05D000885 ORTHO05D001238 5.3e-11 71.6 120 40.8
Sed0025212 Sechium edule HOM05D000885 ORTHO05D001238 1.2e-10 70.5 127 43.3
Duzib133G0495 Durio zibethinus HOM05D000885 ORTHO05D001238 2.6e-10 69.3 120 41.7
FAN09G2473 Fragaria x ananassa HOM05D000885 ORTHO05D001238 2.6e-10 69.3 126 39.7
Thecc.01G307400 Theobroma cacao HOM05D000885 ORTHO05D001238 2.6e-10 69.3 125 43.2
TAR636G3421 Trochodendron aralioides HOM05D000885 ORTHO05D001238 2.6e-10 69.3 123 45.5
Cc03_g01250 Coffea canephora HOM05D000885 ORTHO05D001238 7.7e-10 67.8 139 38.1
Hma1.2p1_0078F.1_g040190 Hydrangea macrophylla HOM05D000885 ORTHO05D001238 1.3e-09 67.0 122 41.8
Sabra10G0000600 Salix brachista HOM05D000885 ORTHO05D001238 2.2e-09 66.2 140 40.7
RcHm_v2.0_Chr3g0456671 Rosa chinensis HOM05D000885 ORTHO05D001238 5.0e-09 65.1 134 42.5
Cpa.g.sc151.41 Carica papaya HOM05D000885 ORTHO05D001238 8.5e-09 64.3 73 50.7
Sed0025341 Sechium edule HOM05D000885 ORTHO05D001238 1.9e-08 63.2 122 41.0
GSVIVG01035052001 Vitis vinifera HOM05D000885 ORTHO05D001238 1.9e-08 63.2 105 46.7
CsaV3_1G038490 Cucumis sativus L. HOM05D000885 ORTHO05D001238 5.5e-08 61.6 141 36.2
Prupe.6G316400 Prunus persica HOM05D000885 ORTHO05D001238 5.5e-08 61.6 118 44.1
COL.COLO4_04124 Corchorus olitorius HOM05D000885 ORTHO05D001238 7.2e-08 61.2 129 41.9
CSS0020477 Camellia sinensis var. sinensis HOM05D000885 ORTHO05D001238 9.4e-08 60.8 86 43.0
CSS0027663 Camellia sinensis var. sinensis HOM05D000885 ORTHO05D001238 9.4e-08 60.8 86 43.0
TAR365G0492 Trochodendron aralioides HOM05D000885 ORTHO05D001238 9.4e-08 60.8 119 42.9
SGA_v2.0_scaffold53G19304 Striga asiatica HOM05D000885 ORTHO05D001238 1.2e-07 60.5 129 38.0
Ciclev10022082m.g Citrus clementina HOM05D000885 ORTHO05D001238 1.6e-07 60.1 130 33.8
Nn3g21592 Nelumbo nucifera HOM05D000885 ORTHO05D001238 1.6e-07 60.1 118 42.4
THA.LOC104825956 Tarenaya hassleriana HOM05D000885 ORTHO05D001238 1.6e-07 60.1 131 35.1
TAR362G0373 Trochodendron aralioides HOM05D000885 ORTHO05D001238 1.6e-07 60.1 123 39.8
Sc09g0002780 Simmondsia chinensis HOM05D000885 ORTHO05D001238 2.1e-07 59.7 139 38.1
AT4G02200 Arabidopsis thaliana HOM05D000885 ORTHO05D001238 2.7e-07 59.3 126 34.1
Ciclev10005825m.g Citrus clementina HOM05D000885 ORTHO05D001238 3.6e-07 58.9 109 45.0
Psat6g152320 Pisum sativum HOM05D000885 ORTHO05D001238 3.6e-07 58.9 131 39.7
Sabra05G0026900 Salix brachista HOM05D000885 ORTHO05D001238 3.6e-07 58.9 122 41.8
VMungo0720G2478 Vigna mungo HOM05D000885 ORTHO05D001238 3.6e-07 58.9 132 41.7
Actinidia25829 Actinidia chinensis HOM05D000885 ORTHO05D001238 4.7e-07 58.5 141 32.6
Cpa.g.sc3064.1 Carica papaya HOM05D000885 ORTHO05D001238 4.7e-07 58.5 119 42.0
Dinv30858 Davidia involucrata HOM05D000885 ORTHO05D001238 4.7e-07 58.5 137 36.5
Nitab4.5_0000361g0100 Nicotiana tabacum HOM05D000885 ORTHO05D001238 4.7e-07 58.5 110 42.7
Peaxi162Scf00073g00019 Petunia axillaris HOM05D000885 ORTHO05D001238 4.7e-07 58.5 141 41.1
TPR.G17699 Trifolium pratense HOM05D000885 ORTHO05D001238 4.7e-07 58.5 131 40.5
Eucgr.H01076 Eucalyptus grandis HOM05D000885 ORTHO05D001238 6.1e-07 58.2 136 35.3
Lalb_Chr21g0310411 Lupinus albus HOM05D000885 ORTHO05D001238 6.1e-07 58.2 84 44.0
Actinidia21018 Actinidia chinensis HOM05D000885 ORTHO05D001238 8.0e-07 57.8 134 36.6
CANSAT54G2807 Cannabis sativa HOM05D000885 ORTHO05D001238 8.0e-07 57.8 140 36.4
CsaV3_7G029650 Cucumis sativus L. HOM05D000885 ORTHO05D001238 8.0e-07 57.8 73 43.8
Lj5g0005519 Lotus japonicus HOM05D000885 ORTHO05D001238 8.0e-07 57.8 140 35.0
Atru.chr5.1074 Acer truncatum HOM05D000885 ORTHO05D001238 1.0e-06 57.4 125 38.4
Gohir.A13G111300 Gossypium hirsutum HOM05D000885 ORTHO05D001238 1.0e-06 57.4 137 38.7
MD12G1209200 Malus domestica HOM05D000885 ORTHO05D001238 1.0e-06 57.4 127 40.9
MD13G1160200 Malus domestica HOM05D000885 ORTHO05D001238 1.0e-06 57.4 128 37.5
Potri.010G000800 Populus trichocarpa HOM05D000885 ORTHO05D001238 1.0e-06 57.4 122 41.8
ECA246G5104 Erigeron canadensis HOM05D000885 ORTHO05D001238 1.4e-06 57.0 136 35.3
Manes.09G174600 Manihot esculenta HOM05D000885 ORTHO05D001238 1.4e-06 57.0 141 35.5
Sed0019029 Sechium edule HOM05D000885 ORTHO05D001238 1.4e-06 57.0 139 36.0
GSVIVG01031200001 Vitis vinifera HOM05D000885 ORTHO05D001238 1.4e-06 57.0 122 40.2
DCAR_002496 Daucus carota HOM05D000885 ORTHO05D001238 1.8e-06 56.6 137 35.0
TWI53G0968 Tripterygium wilfordii HOM05D000885 ORTHO05D001238 1.8e-06 56.6 117 41.0
Aqoxy2G02848_Aqoxy2G02849 Aquilegia oxysepala HOM05D000885 ORTHO05D001238 3.0e-06 55.8 118 39.0
Cc02_g34590 Coffea canephora HOM05D000885 ORTHO05D001238 3.0e-06 55.8 122 39.3
MD04G1196200 Malus domestica HOM05D000885 ORTHO05D001238 3.0e-06 55.8 129 41.1
Duzib106G1493 Durio zibethinus HOM05D000885 ORTHO05D001238 4.0e-06 55.5 141 36.2
Manes.08G113400 Manihot esculenta HOM05D000885 ORTHO05D001238 4.0e-06 55.5 135 36.3
HanXRQChr01g0011781 Helianthus annuus HOM05D000885 ORTHO05D001238 5.2e-06 55.1 138 34.8
Lalb_Chr02g0147981 Lupinus albus HOM05D000885 ORTHO05D001238 5.2e-06 55.1 115 39.1
Nitab4.5_0002715g0080 Nicotiana tabacum HOM05D000885 ORTHO05D001238 5.2e-06 55.1 143 37.8
TWI12G0781 Tripterygium wilfordii HOM05D000885 ORTHO05D001238 5.2e-06 55.1 137 36.5
COL.COLO4_34682 Corchorus olitorius HOM05D000885 ORTHO05D001238 6.7e-06 54.7 128 37.5
FAN14G0304 Fragaria x ananassa HOM05D000885 ORTHO05D001238 6.7e-06 54.7 146 34.9
Potri.005G020900 Populus trichocarpa HOM05D000885 ORTHO05D001238 6.7e-06 54.7 137 36.5
Nitab4.5_0000570g0330 Nicotiana tabacum HOM05D000885 ORTHO05D001238 8.8e-06 54.3 141 36.2
Nitab4.5_0003484g0110 Nicotiana tabacum HOM05D000885 ORTHO05D001238 8.8e-06 54.3 141 36.2
Phvul.007G199600 Phaseolus vulgaris HOM05D000885 ORTHO05D001238 8.8e-06 54.3 122 42.6
Sc16g0008860 Simmondsia chinensis HOM05D000885 ORTHO05D001238 8.8e-06 54.3 141 34.8


User provided reference genes

Program Settings