Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g095440 Pisum sativum HOM05D007500 ORTHO05D009197 1.4e-65 253.1 152 100.0
Medtr3g085430 Medicago truncatula HOM05D007500 ORTHO05D009197 1.1e-49 200.3 134 83.6
Ca_16464_v3 Cicer arietinum L. HOM05D007500 ORTHO05D009197 2.6e-48 195.7 131 83.2
TPR.G28279 Trifolium pratense HOM05D007500 ORTHO05D009197 9.7e-43 177.2 134 76.9
VMungo1383G3421 Vigna mungo HOM05D007500 ORTHO05D009197 7.7e-40 167.5 132 72.7
Glyma.11G250000 Glycine max HOM05D007500 ORTHO05D009197 8.8e-36 154.1 132 67.4
Glyma.18G007100 Glycine max HOM05D007500 ORTHO05D009197 2.0e-35 152.9 130 70.0
arahy.Tifrunner.gnm1.ann1.Z93F9T Arachis hypogaea HOM05D007500 ORTHO05D009197 3.3e-35 152.1 140 64.3
Phvul.001G261300 Phaseolus vulgaris HOM05D007500 ORTHO05D009197 5.7e-35 151.4 132 67.4
MELO3C011458.2 Cucumis melo HOM05D007500 ORTHO05D009197 4.8e-34 148.3 129 65.9
ClCG08G010070 Citrullus lanatus HOM05D007500 ORTHO05D009197 1.4e-33 146.7 129 65.9
CsaV3_6G032240 Cucumis sativus L. HOM05D007500 ORTHO05D009197 4.1e-33 145.2 130 65.4
Gohir.A03G126600 Gossypium hirsutum HOM05D007500 ORTHO05D009197 2.0e-32 142.9 131 61.1
Lj6g0001546 Lotus japonicus HOM05D007500 ORTHO05D009197 2.0e-32 142.9 128 64.1
QL93p2010_0098 Quercus lobata HOM05D007500 ORTHO05D009197 3.5e-32 142.1 129 62.8
COL.COLO4_20391 Corchorus olitorius HOM05D007500 ORTHO05D009197 7.7e-32 141.0 130 60.0
QL03p052860 Quercus lobata HOM05D007500 ORTHO05D009197 1.7e-31 139.8 129 62.0
QL03p053117 Quercus lobata HOM05D007500 ORTHO05D009197 1.7e-31 139.8 129 62.0
Gohir.D02G150000 Gossypium hirsutum HOM05D007500 ORTHO05D009197 2.2e-31 139.4 131 59.5
Gorai.005G168300 Gossypium raimondii HOM05D007500 ORTHO05D009197 2.2e-31 139.4 131 59.5
PGR102G0196 Punica granatum HOM05D007500 ORTHO05D009197 2.9e-31 139.0 131 58.8
Ciclev10033679m.g Citrus clementina HOM05D007500 ORTHO05D009197 3.8e-31 138.7 141 58.2
Duzib268G0307 Durio zibethinus HOM05D007500 ORTHO05D009197 6.5e-31 137.9 132 59.8
CANSAT01G0539 Cannabis sativa HOM05D007500 ORTHO05D009197 8.5e-31 137.5 138 60.9
Dinv14836 Davidia involucrata HOM05D007500 ORTHO05D009197 1.1e-30 137.1 134 59.0
Aa31LG9G13320 Aethionema arabicum HOM05D007500 ORTHO05D009197 1.9e-30 136.3 135 58.5
Potri.001G055000 Populus trichocarpa HOM05D007500 ORTHO05D009197 1.9e-30 136.3 137 58.4
Thecc.02G209700 Theobroma cacao HOM05D007500 ORTHO05D009197 2.5e-30 136.0 121 61.2
Aqoxy6G00433 Aquilegia oxysepala HOM05D007500 ORTHO05D009197 4.2e-30 135.2 142 53.5
Atru.chr11.2314 Acer truncatum HOM05D007500 ORTHO05D009197 5.5e-30 134.8 140 57.9
THA.LOC104814194 Tarenaya hassleriana HOM05D007500 ORTHO05D009197 5.5e-30 134.8 132 56.8
Cfa009364 Carpinus fangiana HOM05D007500 ORTHO05D009197 1.2e-29 133.7 124 60.5
Sed0012176 Sechium edule HOM05D007500 ORTHO05D009197 1.2e-29 133.7 128 61.7
CSS0001813 Camellia sinensis var. sinensis HOM05D007500 ORTHO05D009197 1.6e-29 133.3 115 62.6
Sabra01G0039500 Salix brachista HOM05D007500 ORTHO05D009197 1.6e-29 133.3 122 59.8
CiPaw.05G110500 Carya illinoinensis HOM05D007500 ORTHO05D009197 2.7e-29 132.5 131 60.3
Haze_12411 Corylus avellana HOM05D007500 ORTHO05D009197 2.7e-29 132.5 128 60.2
C07p25790 Brassica napus HOM05D007500 ORTHO05D009197 3.6e-29 132.1 136 58.1
Sp2g08040 Schrenkiella parvula HOM05D007500 ORTHO05D009197 3.6e-29 132.1 135 59.3
BcaC06g34668 Brassica carinata HOM05D007500 ORTHO05D009197 1.0e-28 130.6 136 57.4
BolC7t43101H Brassica oleracea HOM05D007500 ORTHO05D009197 1.0e-28 130.6 136 57.4
Manes.12G012100 Manihot esculenta HOM05D007500 ORTHO05D009197 1.0e-28 130.6 137 57.7
TAR381G0854 Trochodendron aralioides HOM05D007500 ORTHO05D009197 1.8e-28 129.8 135 56.3
AT5G43250 Arabidopsis thaliana HOM05D007500 ORTHO05D009197 2.3e-28 129.4 132 55.3
BcaC06g31713 Brassica carinata HOM05D007500 ORTHO05D009197 2.3e-28 129.4 136 56.6
BcaC06g31714 Brassica carinata HOM05D007500 ORTHO05D009197 2.3e-28 129.4 136 56.6
Sc14g0009050 Simmondsia chinensis HOM05D007500 ORTHO05D009197 3.0e-28 129.0 128 56.2
Nn5g28851 Nelumbo nucifera HOM05D007500 ORTHO05D009197 4.0e-28 128.6 129 57.4
Carub.0008s0545 Capsella rubella HOM05D007500 ORTHO05D009197 8.8e-28 127.5 133 53.4
A06p47960 Brassica napus HOM05D007500 ORTHO05D009197 1.2e-27 127.1 136 55.1
BraA06t27666Z Brassica rapa HOM05D007500 ORTHO05D009197 1.2e-27 127.1 136 55.1
Thhalv10003290m.g Eutrema salsugineum HOM05D007500 ORTHO05D009197 1.5e-27 126.7 131 58.8
Cc11_g16840 Coffea canephora HOM05D007500 ORTHO05D009197 2.6e-27 125.9 133 57.1
TWI18G0612 Tripterygium wilfordii HOM05D007500 ORTHO05D009197 2.6e-27 125.9 137 54.7
Lalb_Chr08g0230661 Lupinus albus HOM05D007500 ORTHO05D009197 4.4e-27 125.2 134 55.2
Solyc05g015330.1 Solanum lycopersicum HOM05D007500 ORTHO05D009197 4.4e-27 125.2 131 55.0
CARHR180640 Cardamine hirsuta HOM05D007500 ORTHO05D009197 5.7e-27 124.8 129 51.9
Cpa.g.sc43.48 Carica papaya HOM05D007500 ORTHO05D009197 5.7e-27 124.8 133 54.1
AUR62024115 Chenopodium quinoa HOM05D007500 ORTHO05D009197 7.5e-27 124.4 127 52.8
Sopen05g010600 Solanum pennellii HOM05D007500 ORTHO05D009197 7.5e-27 124.4 131 55.0
AL8G17240 Arabidopsis lyrata HOM05D007500 ORTHO05D009197 9.8e-27 124.0 133 54.1
PGSC0003DMG400029106 Solanum tuberosum HOM05D007500 ORTHO05D009197 1.3e-26 123.6 118 58.5
AUR62005615 Chenopodium quinoa HOM05D007500 ORTHO05D009197 2.8e-26 122.5 121 57.0
Peaxi162Scf00128g00124 Petunia axillaris HOM05D007500 ORTHO05D009197 2.8e-26 122.5 119 57.1
EL10Ac6g13495 Beta vulgaris HOM05D007500 ORTHO05D009197 3.7e-26 122.1 130 57.7
Lsat_1_v5_gn_8_131281 Lactuca sativa HOM05D007500 ORTHO05D009197 4.8e-26 121.7 134 52.2
DCAR_031200 Daucus carota HOM05D007500 ORTHO05D009197 6.3e-26 121.3 128 52.3
Nitab4.5_0001404g0040 Nicotiana tabacum HOM05D007500 ORTHO05D009197 8.3e-26 120.9 140 52.1
Actinidia30653 Actinidia chinensis HOM05D007500 ORTHO05D009197 1.4e-25 120.2 108 63.0
Prupe.1G226700 Prunus persica HOM05D007500 ORTHO05D009197 1.8e-25 119.8 159 48.4
MSTRG.7998 Avicennia marina HOM05D007500 ORTHO05D009197 4.1e-25 118.6 132 54.5
SGA_v2.0_scaffold9G04716 Striga asiatica HOM05D007500 ORTHO05D009197 4.1e-25 118.6 143 51.7
Nitab4.5_0000861g0040 Nicotiana tabacum HOM05D007500 ORTHO05D009197 5.4e-25 118.2 118 55.9
PSO541G0382 Papaver somniferum HOM05D007500 ORTHO05D009197 5.4e-25 118.2 121 53.7
FAN17G2194 Fragaria x ananassa HOM05D007500 ORTHO05D009197 3.5e-24 115.5 141 50.4
HanXRQChr09g0258281 Helianthus annuus HOM05D007500 ORTHO05D009197 5.9e-24 114.8 133 47.4
MBI01_g29007_MAGBIO Magnolia biondii HOM05D007500 ORTHO05D009197 5.9e-24 114.8 133 47.4
Ah.03g136190 Amaranthus hybridus HOM05D007500 ORTHO05D009197 7.7e-24 114.4 131 51.1
Migut.K00728 Erythranthe guttata HOM05D007500 ORTHO05D009197 1.0e-23 114.0 136 52.2
FAN22G1415 Fragaria x ananassa HOM05D007500 ORTHO05D009197 1.7e-23 113.2 141 49.6
ECA233G2547 Erigeron canadensis HOM05D007500 ORTHO05D009197 2.9e-23 112.5 102 55.9
FAN07G2442 Fragaria x ananassa HOM05D007500 ORTHO05D009197 5.0e-23 111.7 141 49.6
FAN12G0274 Fragaria x ananassa HOM05D007500 ORTHO05D009197 5.0e-23 111.7 117 53.8
Rhsim12G0026300 Rhododendron simsii HOM05D007500 ORTHO05D009197 5.0e-23 111.7 122 54.9
CAN.G43.17 Capsicum annuum HOM05D007500 ORTHO05D009197 1.1e-22 110.5 103 58.3
FvH4_4g23840 Fragaria vesca HOM05D007500 ORTHO05D009197 1.5e-22 110.2 117 53.0
unitig_26.g10395 Utricularia gibba HOM05D007500 ORTHO05D009197 2.5e-22 109.4 135 49.6
SalBow2G0500 Salvia bowleyana HOM05D007500 ORTHO05D009197 4.2e-22 108.6 105 56.2
PSO675G4883 Papaver somniferum HOM05D007500 ORTHO05D009197 1.0e-20 104.0 110 52.7
ATR1120G099 Amborella trichopoda HOM05D007500 ORTHO05D009197 3.0e-20 102.4 115 53.0
RcHm_v2.0_Chr4g0430411 Rosa chinensis HOM05D007500 ORTHO05D009197 5.7e-19 98.2 104 54.8
MD13G1118300 Malus domestica HOM05D007500 ORTHO05D009197 1.7e-18 96.7 121 47.9
CDE06G2379 Ceratophyllum demersum HOM05D007500 ORTHO05D009197 3.7e-18 95.5 121 44.6
MD16G1118400 Malus domestica HOM05D007500 ORTHO05D009197 3.7e-18 95.5 119 47.1
HPP92_002864 Vanilla planifolia HOM05D007500 ORTHO05D009197 2.7e-16 89.4 90 51.1
Zm00001eb122050 Zea mays HOM05D007500 ORTHO05D009197 3.3e-14 82.4 133 39.8
Os01g0183400 Oryza sativa ssp. japonica HOM05D007500 ORTHO05D009197 1.0e-12 77.4 118 38.1
SEGI_35529 Sequoiadendron giganteum HOM05D007500 ORTHO05D009197 1.7e-10 70.1 88 42.0
Pp3c13_23370 Physcomitrium patens HOM05D020496 ORTHO05D009197 4.1e-09 65.5 114 38.6
Pp3c13_23373 Physcomitrium patens HOM05D020496 ORTHO05D009197 4.1e-09 65.5 114 38.6
CAN.G1248.23 Capsicum annuum HOM05D000764 ORTHO05D009197 2.0e-08 63.2 50 60.0
SMO358G0741 Selaginella moellendorffii HOM05D020496 ORTHO05D009197 2.3e-07 59.7 89 36.0
unitig_61.g26371 Utricularia gibba HOM05D000789 ORTHO05D000897 5.6e-06 55.1 112 32.1
PSO017G0374 Papaver somniferum HOM05D000789 ORTHO05D000897 7.3e-06 54.7 101 34.7
PSO478G0136 Papaver somniferum HOM05D000789 ORTHO05D000897 7.3e-06 54.7 101 34.7
AagrBONN_evm.TU.Sc2ySwM_362.657 Anthoceros agrestis HOM05D020496 ORTHO05D009197 9.5e-06 54.3 150 29.3
ECA246G2484 Erigeron canadensis HOM05D000789 ORTHO05D000897 9.5e-06 54.3 89 36.0
Nitab4.5_0001311g0050 Nicotiana tabacum HOM05D000789 ORTHO05D000897 9.5e-06 54.3 105 35.2
VMungo0540G0387 Vigna mungo HOM05D000789 ORTHO05D000897 9.5e-06 54.3 92 38.0


User provided reference genes

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