Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g093080 Pisum sativum HOM05D004675 ORTHO05D005631 1.6e-112 409.5 208 100.0
Medtr3g085940 Medicago truncatula HOM05D004675 ORTHO05D005631 1.4e-108 396.4 208 96.6
Lj6g0000646 Lotus japonicus HOM05D004675 ORTHO05D005631 6.9e-108 394.0 208 95.2
arahy.Tifrunner.gnm1.ann1.06P6RC Arachis hypogaea HOM05D004675 ORTHO05D005631 9.0e-108 393.7 206 96.1
arahy.Tifrunner.gnm1.ann1.J0N2EL Arachis hypogaea HOM05D004675 ORTHO05D005631 9.0e-108 393.7 206 96.1
Phvul.001G258800 Phaseolus vulgaris HOM05D004675 ORTHO05D005631 9.0e-108 393.7 208 94.7
VMungo1383G2932 Vigna mungo HOM05D004675 ORTHO05D005631 2.6e-107 392.1 208 94.7
Glyma.18G009900 Glycine max HOM05D004675 ORTHO05D005631 4.5e-107 391.3 208 94.2
Thecc.02G273100 Theobroma cacao HOM05D004675 ORTHO05D005631 7.6e-107 390.6 208 94.2
Lalb_Chr08g0230731 Lupinus albus HOM05D004675 ORTHO05D005631 1.0e-106 390.2 208 93.8
Duzib268G1570 Durio zibethinus HOM05D004675 ORTHO05D005631 1.3e-106 389.8 208 93.8
Ciclev10032763m.g Citrus clementina HOM05D004675 ORTHO05D005631 1.7e-106 389.4 208 94.7
COL.COLO4_23607 Corchorus olitorius HOM05D004675 ORTHO05D005631 2.2e-106 389.0 208 93.8
Duzib251G0102 Durio zibethinus HOM05D004675 ORTHO05D005631 2.2e-106 389.0 208 93.3
CANSAT01G3139 Cannabis sativa HOM05D004675 ORTHO05D005631 2.9e-106 388.7 206 94.7
Haze_12338 Corylus avellana HOM05D004675 ORTHO05D005631 6.5e-106 387.5 208 93.8
Gohir.A03G129700 Gossypium hirsutum HOM05D004675 ORTHO05D005631 6.5e-106 387.5 208 93.3
Gohir.A01G156300 Gossypium hirsutum HOM05D004675 ORTHO05D005631 8.5e-106 387.1 208 92.8
Gohir.D01G154000 Gossypium hirsutum HOM05D004675 ORTHO05D005631 8.5e-106 387.1 208 92.8
Atru.chr11.2230 Acer truncatum HOM05D004675 ORTHO05D005631 1.4e-105 386.3 208 92.3
Cpa.g.c35504 Carica papaya HOM05D004675 ORTHO05D005631 1.4e-105 386.3 208 93.3
Manes.13G014900 Manihot esculenta HOM05D004675 ORTHO05D005631 1.4e-105 386.3 208 93.3
TAR629G1273 Trochodendron aralioides HOM05D004675 ORTHO05D005631 1.4e-105 386.3 208 93.8
Gohir.D02G155000 Gossypium hirsutum HOM05D004675 ORTHO05D005631 1.9e-105 386.0 208 93.3
Gorai.005G172500 Gossypium raimondii HOM05D004675 ORTHO05D005631 1.9e-105 386.0 208 93.3
CiPaw.06G062900 Carya illinoinensis HOM05D004675 ORTHO05D005631 3.2e-105 385.2 208 92.8
Actinidia30679 Actinidia chinensis HOM05D004675 ORTHO05D005631 4.2e-105 384.8 208 91.3
MSTRG.7971 Avicennia marina HOM05D004675 ORTHO05D005631 4.2e-105 384.8 206 93.2
Manes.12G015800 Manihot esculenta HOM05D004675 ORTHO05D005631 4.2e-105 384.8 208 92.8
Gorai.002G190700 Gossypium raimondii HOM05D004675 ORTHO05D005631 5.5e-105 384.4 208 91.8
MD13G1109700 Malus domestica HOM05D004675 ORTHO05D005631 5.5e-105 384.4 208 91.8
Potri.010G055100 Populus trichocarpa HOM05D004675 ORTHO05D005631 5.5e-105 384.4 208 92.8
Oeu038665.1 Olea europaea HOM05D004675 ORTHO05D005631 7.2e-105 384.0 206 92.2
MBI11_g02883_MAGBIO Magnolia biondii HOM05D004675 ORTHO05D005631 9.4e-105 383.6 208 91.8
Oeu041690.1 Olea europaea HOM05D004675 ORTHO05D005631 9.4e-105 383.6 210 92.4
GSVIVG01010325001 Vitis vinifera HOM05D004675 ORTHO05D005631 9.4e-105 383.6 208 92.3
MD16G1109600 Malus domestica HOM05D004675 ORTHO05D005631 1.2e-104 383.3 208 91.3
Potri.008G179600 Populus trichocarpa HOM05D004675 ORTHO05D005631 1.6e-104 382.9 208 92.3
TWI18G0072 Tripterygium wilfordii HOM05D004675 ORTHO05D005631 1.6e-104 382.9 208 92.3
CSS0008983 Camellia sinensis var. sinensis HOM05D004675 ORTHO05D005631 2.7e-104 382.1 207 91.3
Aqoxy5G03546 Aquilegia oxysepala HOM05D004675 ORTHO05D005631 4.6e-104 381.3 208 91.8
MSTRG.527 Avicennia marina HOM05D004675 ORTHO05D005631 6.1e-104 380.9 206 91.3
Duzib248G1503 Durio zibethinus HOM05D004675 ORTHO05D005631 6.1e-104 380.9 207 91.8
Sabra08G0137200 Salix brachista HOM05D004675 ORTHO05D005631 7.9e-104 380.6 208 92.3
PGR102G1366 Punica granatum HOM05D004675 ORTHO05D005631 1.4e-103 379.8 208 92.3
Cc11_g16480 Coffea canephora HOM05D004675 ORTHO05D005631 2.3e-103 379.0 206 91.7
RcHm_v2.0_Chr4g0431671 Rosa chinensis HOM05D004675 ORTHO05D005631 2.3e-103 379.0 207 90.3
Nn3g16555 Nelumbo nucifera HOM05D004675 ORTHO05D005631 3.9e-103 378.3 208 90.9
THA.LOC104805258 Tarenaya hassleriana HOM05D004675 ORTHO05D005631 3.9e-103 378.3 208 90.9
FvH4_4g24620 Fragaria vesca HOM05D004675 ORTHO05D005631 5.1e-103 377.9 207 89.4
Prupe.1G235600 Prunus persica HOM05D004675 ORTHO05D005631 5.1e-103 377.9 208 89.9
Migut.K00688 Erythranthe guttata HOM05D004675 ORTHO05D005631 6.7e-103 377.5 206 90.3
SalBow8G5054 Salvia bowleyana HOM05D004675 ORTHO05D005631 8.8e-103 377.1 208 88.9
Hund02761 Selenicereus undatus HOM05D004675 ORTHO05D005631 8.8e-103 377.1 208 90.4
TWI75G1255 Tripterygium wilfordii HOM05D004675 ORTHO05D005631 8.8e-103 377.1 213 90.6
PGSC0003DMG400017457 Solanum tuberosum HOM05D004675 ORTHO05D005631 1.5e-102 376.3 209 90.4
Dinv18164 Davidia involucrata HOM05D004675 ORTHO05D005631 1.9e-102 375.9 208 90.4
HanXRQChr06g0174811 Helianthus annuus HOM05D004675 ORTHO05D005631 1.9e-102 375.9 208 89.9
Aa31LG2G6360 Aethionema arabicum HOM05D004675 ORTHO05D005631 3.3e-102 375.2 208 89.9
Prupe.1G235300 Prunus persica HOM05D004675 ORTHO05D005631 3.3e-102 375.2 208 88.9
CAN.G227.11 Capsicum annuum HOM05D004675 ORTHO05D005631 7.4e-102 374.0 209 90.0
HanXRQChr17g0540031 Helianthus annuus HOM05D004675 ORTHO05D005631 7.4e-102 374.0 208 89.9
SGA_v2.0_scaffold1G00563 Striga asiatica HOM05D004675 ORTHO05D005631 7.4e-102 374.0 206 90.3
Lsat_1_v5_gn_3_29441 Lactuca sativa HOM05D004675 ORTHO05D005631 9.7e-102 373.6 206 89.3
ClCG05G026270 Citrullus lanatus HOM05D004675 ORTHO05D005631 1.7e-101 372.9 207 89.4
unitig_8.g3141 Utricularia gibba HOM05D004675 ORTHO05D005631 1.7e-101 372.9 207 88.9
CsaV3_5G030550 Cucumis sativus L. HOM05D004675 ORTHO05D005631 2.2e-101 372.5 208 89.4
SalBow2G2451 Salvia bowleyana HOM05D004675 ORTHO05D005631 3.7e-101 371.7 206 88.3
MELO3C011895.2 Cucumis melo HOM05D004675 ORTHO05D005631 4.8e-101 371.3 203 91.1
Solyc05g014370.3 Solanum lycopersicum HOM05D004675 ORTHO05D005631 4.8e-101 371.3 209 89.0
Sopen05g009500 Solanum pennellii HOM05D004675 ORTHO05D005631 4.8e-101 371.3 209 89.0
vmacro01089 Vaccinium macrocarpon HOM05D004675 ORTHO05D005631 4.8e-101 371.3 218 85.8
BcaB07g30625 Brassica carinata HOM05D004675 ORTHO05D005631 8.2e-101 370.5 208 88.5
A09p25100 Brassica napus HOM05D004675 ORTHO05D005631 8.2e-101 370.5 208 88.5
BraA09t38098Z Brassica rapa HOM05D004675 ORTHO05D005631 8.2e-101 370.5 208 88.5
DCAR_007019 Daucus carota HOM05D004675 ORTHO05D005631 8.2e-101 370.5 207 88.9
Thhalv10004915m.g Eutrema salsugineum HOM05D004675 ORTHO05D005631 1.1e-100 370.2 208 89.4
AL5G14640 Arabidopsis lyrata HOM05D004675 ORTHO05D005631 1.8e-100 369.4 208 88.9
C09p32160 Brassica napus HOM05D004675 ORTHO05D005631 2.4e-100 369.0 208 88.5
CDE02G3169 Ceratophyllum demersum HOM05D004675 ORTHO05D005631 3.1e-100 368.6 208 88.0
Hma1.2p1_0079F.1_g041690 Hydrangea macrophylla HOM05D004675 ORTHO05D005631 3.1e-100 368.6 208 88.9
PSO782G3312 Papaver somniferum HOM05D004675 ORTHO05D005631 4.1e-100 368.2 205 89.8
BcaC04g21407 Brassica carinata HOM05D004675 ORTHO05D005631 9.1e-100 367.1 208 88.0
BolC9t56064H Brassica oleracea HOM05D004675 ORTHO05D005631 9.1e-100 367.1 208 88.0
Peaxi162Scf00128g00833 Petunia axillaris HOM05D004675 ORTHO05D005631 1.2e-99 366.7 207 89.9
PSO063G1359 Papaver somniferum HOM05D004675 ORTHO05D005631 2.0e-99 365.9 205 89.3
Sp2g15200 Schrenkiella parvula HOM05D004675 ORTHO05D005631 2.0e-99 365.9 208 88.5
QL03p055286 Quercus lobata HOM05D004675 ORTHO05D005631 2.6e-99 365.5 207 89.9
Sed0023640 Sechium edule HOM05D004675 ORTHO05D005631 3.4e-99 365.2 206 88.8
Carub.0005s0383 Capsella rubella HOM05D004675 ORTHO05D005631 4.5e-99 364.8 208 87.5
Os04g0486500 Oryza sativa ssp. japonica HOM05D004675 ORTHO05D005631 4.5e-99 364.8 208 87.0
ATR0686G191 Amborella trichopoda HOM05D004675 ORTHO05D005631 5.9e-99 364.4 208 86.5
Sabra10G0049900 Salix brachista HOM05D004675 ORTHO05D005631 8.5e-98 360.5 208 88.9
Dinv11000 Davidia involucrata HOM05D004675 ORTHO05D005631 3.2e-97 358.6 196 91.3
HPP92_024295 Vanilla planifolia HOM05D004675 ORTHO05D005631 2.1e-96 355.9 208 84.1
HPP92_024302 Vanilla planifolia HOM05D004675 ORTHO05D005631 2.1e-96 355.9 208 83.7
AT3G25980 Arabidopsis thaliana HOM05D004675 ORTHO05D005631 1.8e-95 352.8 208 86.1
FAN07G1447 Fragaria x ananassa HOM05D004675 ORTHO05D005631 3.0e-95 352.1 207 85.0
FAN12G3600 Fragaria x ananassa HOM05D004675 ORTHO05D005631 3.0e-95 352.1 207 85.0
FAN17G2208 Fragaria x ananassa HOM05D004675 ORTHO05D005631 5.1e-95 351.3 207 85.0
Rhsim12G0035500 Rhododendron simsii HOM05D004675 ORTHO05D005631 2.6e-94 349.0 208 84.6
Ca_16490_v3 Cicer arietinum L. HOM05D004675 ORTHO05D005631 1.7e-93 346.3 179 96.6
FAN22G1703 Fragaria x ananassa HOM05D004675 ORTHO05D005631 4.8e-93 344.7 207 83.1
CiPaw.05G173000 Carya illinoinensis HOM05D004675 ORTHO05D005631 2.6e-91 339.0 178 94.4
Hund25435 Selenicereus undatus HOM05D004675 ORTHO05D005631 4.5e-91 338.2 208 83.7
QL11p019873 Quercus lobata HOM05D004675 ORTHO05D005631 8.5e-90 334.0 178 93.3
AUR62024170 Chenopodium quinoa HOM05D004675 ORTHO05D005631 2.5e-89 332.4 206 85.0
CARHR146960 Cardamine hirsuta HOM05D004675 ORTHO05D005631 1.2e-88 330.1 177 91.0
QL11p019923 Quercus lobata HOM05D004675 ORTHO05D005631 6.1e-88 327.8 178 92.1
ECA246G2134 Erigeron canadensis HOM05D004675 ORTHO05D005631 1.5e-86 323.2 179 88.8
SEGI_13539 Sequoiadendron giganteum HOM05D004675 ORTHO05D005631 2.0e-86 322.8 208 75.0
AUR62005564 Chenopodium quinoa HOM05D004675 ORTHO05D005631 5.7e-86 321.2 210 83.3
Zm00001eb425240 Zea mays HOM05D004675 ORTHO05D005631 2.8e-85 318.9 190 84.2
Dinv18160 Davidia involucrata HOM05D004675 ORTHO05D005631 2.0e-83 312.8 208 80.3
Zm00001eb079190 Zea mays HOM05D004675 ORTHO05D005631 2.0e-78 296.2 205 75.1
Glyma.11G247400 Glycine max HOM05D004675 ORTHO05D005631 2.2e-77 292.7 156 92.9
Sed0021695 Sechium edule HOM05D004675 ORTHO05D005631 6.3e-77 291.2 167 85.6
EL10Ac6g13425 Beta vulgaris HOM05D004675 ORTHO05D005631 1.1e-76 290.4 207 74.9
Sc04g0009910 Simmondsia chinensis HOM05D004675 ORTHO05D005631 1.6e-75 286.6 156 91.7
Nitab4.5_0001898g0060 Nicotiana tabacum HOM05D004675 ORTHO05D005631 8.8e-71 270.8 232 64.2
Mapoly0038s0109 Marchantia polymorpha HOM05D004675 ORTHO05D005631 1.4e-68 263.5 202 63.4
Nitab4.5_0000581g0180 Nicotiana tabacum HOM05D004675 ORTHO05D005631 5.4e-68 261.5 206 68.0
Pp3c4_13910 Physcomitrium patens HOM05D004675 ORTHO05D005631 1.6e-67 260.0 203 62.1
SMO201G0213 Selaginella moellendorffii HOM05D004675 ORTHO05D005631 1.9e-65 253.1 200 59.5
AagrBONN_evm.TU.Sc2ySwM_228.148 Anthoceros agrestis HOM05D004675 ORTHO05D005631 1.2e-64 250.4 197 61.9
Eucgr.B03457 Eucalyptus grandis HOM05D004675 ORTHO05D005631 8.0e-64 247.7 162 80.2
TPR.G22441 Trifolium pratense HOM05D004675 ORTHO05D005631 3.7e-61 238.8 133 95.5
CBR_g22979 Chara braunii HOM05D004675 ORTHO05D005631 2.7e-59 232.6 201 55.2
Actinidia08092 Actinidia chinensis HOM05D004675 ORTHO05D005631 6.6e-58 228.0 120 93.3
C07p35010 Brassica napus HOM05D004675 ORTHO05D005631 9.8e-54 214.2 148 75.0
Lsat_1_v5_gn_0_42421 Lactuca sativa HOM05D004675 ORTHO05D005631 2.4e-52 209.5 207 52.2
HanXRQChr01g0005811 Helianthus annuus HOM05D004675 ORTHO05D005631 3.2e-52 209.1 151 74.2
MCO12G028 Micromonas commoda HOM05D004675 ORTHO05D005631 7.0e-52 208.0 207 53.1
PRCOL_00002054 Prasinoderma coloniale HOM05D004675 ORTHO05D005631 1.5e-49 200.3 198 48.5
Ah.03g133810 Amaranthus hybridus HOM05D004675 ORTHO05D005631 5.6e-49 198.4 209 56.0
Cre08.g380400 Chlamydomonas reinhardtii HOM05D004675 ORTHO05D005631 5.2e-47 191.8 196 46.4
Lsat_1_v5_gn_3_72261 Lactuca sativa HOM05D004675 ORTHO05D005631 1.6e-43 180.3 231 44.2
Oeu060827.1 Olea europaea HOM05D004675 ORTHO05D005631 7.8e-43 177.9 160 65.0
Dinv15224 Davidia involucrata HOM05D004675 ORTHO05D005631 2.1e-40 169.9 208 50.5
HanXRQChr14g0462331 Helianthus annuus HOM05D004675 ORTHO05D005631 2.8e-40 169.5 98 84.7
Oeu049161.1 Olea europaea HOM05D004675 ORTHO05D005631 3.9e-34 149.1 206 47.1
Atru.chr2.951 Acer truncatum HOM05D004675 ORTHO05D005631 1.8e-31 140.2 96 78.1
HanXRQChr13g0416091 Helianthus annuus HOM05D004675 ORTHO05D005631 6.8e-31 138.3 99 73.7
Haze_26713 Corylus avellana HOM05D000877 ORTHO05D005631 8.9e-31 137.9 187 38.0
Actinidia08091 Actinidia chinensis HOM05D004675 ORTHO05D005631 7.6e-30 134.8 74 89.2
BcaC06g33934 Brassica carinata HOM05D004675 ORTHO05D005631 3.2e-28 129.4 92 72.8
Actinidia25751 Actinidia chinensis HOM05D004675 ORTHO05D005631 4.6e-27 125.6 83 73.5
Atru.chr9.690 Acer truncatum HOM05D004675 ORTHO05D005631 1.0e-26 124.4 135 54.1
HanXRQChr11g0351801 Helianthus annuus HOM05D004675 ORTHO05D005631 7.3e-25 118.2 60 90.0
BolC7t44033H Brassica oleracea HOM05D004675 ORTHO05D005631 4.0e-23 112.5 82 69.5
A06p42320 Brassica napus HOM05D004675 ORTHO05D005631 9.0e-23 111.3 60 90.0
HanXRQChr10g0283671 Helianthus annuus HOM05D004675 ORTHO05D005631 1.5e-22 110.5 73 79.5
Cc11_g17360 Coffea canephora HOM05D004675 ORTHO05D005631 1.1e-12 77.8 61 62.3
BcaB01g02675 Brassica carinata HOM05D004675 ORTHO05D000065 4.6e-11 72.4 62 66.1
Atru.chr4.1238 Acer truncatum HOM05D004675 ORTHO05D052308 2.1e-08 63.5 39 69.2
BcaB04g19721 Brassica carinata HOM05D004675 ORTHO05D092614 1.4e-07 60.8 58 63.8
Hma1.2p1_3454F.1_g336085 Hydrangea macrophylla HOM05D004675 ORTHO05D005631 1.8e-07 60.5 38 71.1
AagrBONN_evm.TU.Sc2ySwM_368.712 Anthoceros agrestis HOM05D006956 ORTHO05D008824 5.3e-07 58.9 167 24.0


User provided reference genes

Program Settings