Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g091440 Pisum sativum HOM05D001656 ORTHO05D005043 4.4e-239 830.9 409 100.0
Medtr3g110710 Medicago truncatula HOM05D001656 ORTHO05D005043 1.0e-216 756.5 391 94.6
Ca_15555_v3 Cicer arietinum L. HOM05D001656 ORTHO05D005043 5.7e-215 750.7 391 93.6
TPR.G12406 Trifolium pratense HOM05D001656 ORTHO05D005043 4.1e-213 744.6 392 93.1
Glyma.04G088400 Glycine max HOM05D001656 ORTHO05D005043 6.3e-206 720.7 391 90.3
Lj1g0025512 Lotus japonicus HOM05D001656 ORTHO05D005043 1.3e-203 713.0 391 89.0
VMungo1309G0971 Vigna mungo HOM05D001656 ORTHO05D005043 8.9e-200 700.3 391 86.7
Lalb_Chr11g0064681 Lupinus albus HOM05D001656 ORTHO05D005043 1.2e-199 699.9 391 86.7
Phvul.009G114000 Phaseolus vulgaris HOM05D001656 ORTHO05D005043 9.8e-199 696.8 391 85.2
arahy.Tifrunner.gnm1.ann1.AQ9I9J Arachis hypogaea HOM05D001656 ORTHO05D005043 8.3e-198 693.7 392 85.7
arahy.Tifrunner.gnm1.ann1.UN376R Arachis hypogaea HOM05D001656 ORTHO05D005043 3.2e-197 691.8 392 85.5
Thecc.08G080000 Theobroma cacao HOM05D001656 ORTHO05D005043 5.2e-192 674.5 391 83.4
Gohir.D05G217900 Gossypium hirsutum HOM05D001656 ORTHO05D005043 1.2e-191 673.3 391 82.4
Gorai.009G224700 Gossypium raimondii HOM05D001656 ORTHO05D005043 1.3e-190 669.8 391 81.8
Gohir.A05G214600 Gossypium hirsutum HOM05D001656 ORTHO05D005043 1.7e-190 669.5 391 81.8
Duzib041G0753 Durio zibethinus HOM05D001656 ORTHO05D005043 4.9e-190 667.9 391 81.6
COL.COLO4_35356 Corchorus olitorius HOM05D001656 ORTHO05D005043 2.4e-189 665.6 392 81.9
CANSAT25G3831 Cannabis sativa HOM05D001656 ORTHO05D005043 7.0e-189 664.1 391 81.8
QL12p040536 Quercus lobata HOM05D001656 ORTHO05D005043 1.6e-185 652.9 391 80.8
Cpa.g.sc160.9 Carica papaya HOM05D001656 ORTHO05D005043 3.1e-184 648.7 391 80.3
Duzib093G1672 Durio zibethinus HOM05D001656 ORTHO05D005043 4.0e-184 648.3 382 81.2
Haze_19016 Corylus avellana HOM05D001656 ORTHO05D005043 6.8e-184 647.5 389 80.7
Cfa020711 Carpinus fangiana HOM05D001656 ORTHO05D005043 8.9e-184 647.1 389 81.0
CsaV3_6G036230 Cucumis sativus L. HOM05D001656 ORTHO05D005043 1.5e-183 646.4 391 80.1
Manes.18G053600 Manihot esculenta HOM05D001656 ORTHO05D005043 3.4e-183 645.2 391 79.3
Atru.chr13.919 Acer truncatum HOM05D001656 ORTHO05D005043 5.8e-183 644.4 391 79.5
Sed0025136 Sechium edule HOM05D001656 ORTHO05D005043 5.8e-183 644.4 391 79.0
Eucgr.F00471 Eucalyptus grandis HOM05D001656 ORTHO05D005043 1.3e-182 643.3 391 78.5
Nn6g32050 Nelumbo nucifera HOM05D001656 ORTHO05D005043 2.2e-182 642.5 391 78.3
Potri.019G077600 Populus trichocarpa HOM05D001656 ORTHO05D005043 4.9e-182 641.3 387 79.1
TWI56G0239 Tripterygium wilfordii HOM05D001656 ORTHO05D005043 1.1e-181 640.2 391 78.5
Dinv22032 Davidia involucrata HOM05D001656 ORTHO05D005043 1.6e-180 636.3 390 78.5
Nn5g30719 Nelumbo nucifera HOM05D001656 ORTHO05D005043 3.5e-180 635.2 391 77.2
Sopen00g004570 Solanum pennellii HOM05D001656 ORTHO05D005043 6.0e-180 634.4 392 77.3
Ah.11g038980 Amaranthus hybridus HOM05D001656 ORTHO05D005043 1.0e-179 633.6 391 76.5
CiPaw.15G153300 Carya illinoinensis HOM05D001656 ORTHO05D005043 1.3e-179 633.3 387 78.3
Solyc04g077040.3 Solanum lycopersicum HOM05D001656 ORTHO05D005043 1.3e-179 633.3 392 77.0
CAN.G1801.4 Capsicum annuum HOM05D001656 ORTHO05D005043 1.7e-179 632.9 391 76.5
Lj4C747T6 Lonicera japonica HOM05D001656 ORTHO05D005043 1.7e-179 632.9 391 78.0
TWI36G0349 Tripterygium wilfordii HOM05D001656 ORTHO05D005043 8.6e-179 630.6 391 78.0
GSVIVG01009259001 Vitis vinifera HOM05D001656 ORTHO05D005043 1.1e-178 630.2 391 76.7
Lsat_1_v5_gn_2_121140 Lactuca sativa HOM05D001656 ORTHO05D005043 4.3e-178 628.2 392 77.6
SalBow7G3472 Salvia bowleyana HOM05D001656 ORTHO05D005043 4.3e-178 628.2 391 76.0
TAR381G0234 Trochodendron aralioides HOM05D001656 ORTHO05D005043 4.3e-178 628.2 391 77.2
Cc10_g08000 Coffea canephora HOM05D001656 ORTHO05D005043 9.5e-178 627.1 391 75.7
DCAR_020038 Daucus carota HOM05D001656 ORTHO05D005043 9.5e-178 627.1 391 77.5
Ciclev10000739m.g Citrus clementina HOM05D001656 ORTHO05D005043 1.2e-177 626.7 391 77.5
FvH4_5g33570 Fragaria vesca HOM05D001656 ORTHO05D005043 1.6e-177 626.3 391 75.7
PGR083G1861 Punica granatum HOM05D001656 ORTHO05D005043 1.6e-177 626.3 391 75.7
PGSC0003DMG400004938 Solanum tuberosum HOM05D001656 ORTHO05D005043 1.6e-177 626.3 392 76.0
Nitab4.5_0006011g0010 Nicotiana tabacum HOM05D001656 ORTHO05D005043 2.1e-177 625.9 392 76.5
Migut.C00423 Erythranthe guttata HOM05D001656 ORTHO05D005043 2.8e-177 625.5 391 76.5
Sabra19G0088700 Salix brachista HOM05D001656 ORTHO05D005043 3.6e-177 625.2 391 76.5
FvH4_5g33550 Fragaria vesca HOM05D001656 ORTHO05D005043 4.7e-177 624.8 391 75.4
ClCG08G008920 Citrullus lanatus HOM05D001656 ORTHO05D005043 8.1e-177 624.0 391 79.0
Nitab4.5_0003791g0030 Nicotiana tabacum HOM05D001656 ORTHO05D005043 1.4e-176 623.2 392 76.8
AUR62034954 Chenopodium quinoa HOM05D001656 ORTHO05D005043 1.8e-176 622.9 391 76.5
Prupe.1G542700 Prunus persica HOM05D001656 ORTHO05D005043 1.8e-176 622.9 391 75.7
MSTRG.915 Avicennia marina HOM05D001656 ORTHO05D005043 5.2e-176 621.3 391 74.9
RcHm_v2.0_Chr7g0232371 Rosa chinensis HOM05D001656 ORTHO05D005043 8.9e-176 620.5 391 74.9
Actinidia19273 Actinidia chinensis HOM05D001656 ORTHO05D005043 1.2e-175 620.2 391 77.0
vmacro21383 Vaccinium macrocarpon HOM05D001656 ORTHO05D005043 1.2e-175 620.2 391 76.2
Aqoxy5G02659 Aquilegia oxysepala HOM05D001656 ORTHO05D005043 1.5e-175 619.8 389 75.3
AUR62035764 Chenopodium quinoa HOM05D001656 ORTHO05D005043 2.0e-175 619.4 391 76.0
Lj4A79T57 Lonicera japonica HOM05D001656 ORTHO05D005043 2.6e-175 619.0 391 76.0
ECA247G3818 Erigeron canadensis HOM05D001656 ORTHO05D005043 5.8e-175 617.8 392 76.0
MD15G1398600 Malus domestica HOM05D001656 ORTHO05D005043 5.8e-175 617.8 391 74.4
THA.LOC104799841 Tarenaya hassleriana HOM05D001656 ORTHO05D005043 5.8e-175 617.8 391 75.4
SpUn0011_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 1.3e-174 616.7 391 74.4
SpUn0057_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 1.3e-174 616.7 391 74.4
SpUn0134_0020 Schrenkiella parvula HOM05D001656 ORTHO05D005043 1.3e-174 616.7 391 74.4
Sc26g0004310 Simmondsia chinensis HOM05D001656 ORTHO05D005043 1.3e-174 616.7 406 74.4
Actinidia10250 Actinidia chinensis HOM05D001656 ORTHO05D005043 1.7e-174 616.3 391 76.5
Carub.0008s0951 Capsella rubella HOM05D001656 ORTHO05D005043 2.2e-174 615.9 391 75.4
Hma1.2p1_1078F.1_g254805 Hydrangea macrophylla HOM05D001656 ORTHO05D005043 4.9e-174 614.8 392 75.0
MBI16_g26737_MAGBIO Magnolia biondii HOM05D001656 ORTHO05D005043 4.9e-174 614.8 389 75.1
MD08G1210700 Malus domestica HOM05D001656 ORTHO05D005043 3.2e-173 612.1 391 73.7
Rhsim06G0067500 Rhododendron simsii HOM05D001656 ORTHO05D005043 3.2e-173 612.1 391 75.7
Oeu046408.1 Olea europaea HOM05D001656 ORTHO05D005043 4.2e-173 611.7 392 76.0
CAN.G1801.5 Capsicum annuum HOM05D001656 ORTHO05D005043 9.2e-173 610.5 391 73.7
PSO447G0306 Papaver somniferum HOM05D001656 ORTHO05D005043 3.5e-172 608.6 391 73.9
MSTRG.914 Avicennia marina HOM05D001656 ORTHO05D005043 4.6e-172 608.2 391 74.4
Cc10_g08010 Coffea canephora HOM05D001656 ORTHO05D005043 1.0e-171 607.1 391 73.1
AT5G49650 Arabidopsis thaliana HOM05D001656 ORTHO05D005043 1.3e-171 606.7 391 74.7
AL8G23490 Arabidopsis lyrata HOM05D001656 ORTHO05D005043 1.7e-171 606.3 391 73.9
DCAR_009544 Daucus carota HOM05D001656 ORTHO05D005043 2.3e-171 605.9 391 74.4
RcHm_v2.0_Chr7g0232391 Rosa chinensis HOM05D001656 ORTHO05D005043 1.1e-170 603.6 395 73.7
Oeu035948.1 Olea europaea HOM05D001656 ORTHO05D005043 4.3e-170 601.7 391 73.7
BcaC01g01862 Brassica carinata HOM05D001656 ORTHO05D005043 5.6e-170 601.3 391 73.1
ATR0315G023 Amborella trichopoda HOM05D001656 ORTHO05D005043 9.6e-170 600.5 388 74.0
Solyc04g077030.3 Solanum lycopersicum HOM05D001656 ORTHO05D005043 9.6e-170 600.5 409 71.6
Aa31LG3G8940 Aethionema arabicum HOM05D001656 ORTHO05D005043 1.6e-169 599.7 404 72.8
Thhalv10013140m.g Eutrema salsugineum HOM05D001656 ORTHO05D005043 3.6e-169 598.6 391 72.6
Nitab4.5_0010814g0010 Nicotiana tabacum HOM05D001656 ORTHO05D005043 6.2e-169 597.8 418 69.4
CDE02G2348 Ceratophyllum demersum HOM05D001656 ORTHO05D005043 1.4e-168 596.7 386 73.6
Sopen00g003720 Solanum pennellii HOM05D001656 ORTHO05D005043 4.4e-167 591.7 377 75.1
BolC3t19406H Brassica oleracea HOM05D001656 ORTHO05D005043 1.3e-166 590.1 397 71.5
ECA232G0787 Erigeron canadensis HOM05D001656 ORTHO05D005043 1.7e-166 589.7 387 73.9
Hund05241 Selenicereus undatus HOM05D001656 ORTHO05D005043 3.8e-166 588.6 403 72.0
Sc08g0003410 Simmondsia chinensis HOM05D001656 ORTHO05D005043 2.4e-165 585.9 392 72.2
FAN18G2419 Fragaria x ananassa HOM05D001656 ORTHO05D003489 4.2e-165 585.1 384 72.9
BcaB01g00958 Brassica carinata HOM05D001656 ORTHO05D005043 5.4e-165 584.7 392 71.9
A06p20550 Brassica napus HOM05D001656 ORTHO05D005043 1.6e-164 583.2 397 71.0
C03p71250 Brassica napus HOM05D001656 ORTHO05D005043 1.6e-164 583.2 409 69.2
RcHm_v2.0_Chr7g0232401 Rosa chinensis HOM05D001656 ORTHO05D005043 2.1e-164 582.8 372 73.9
FAN18G4580 Fragaria x ananassa HOM05D001656 ORTHO05D005043 4.6e-164 581.6 375 74.1
Zm00001eb109880 Zea mays HOM05D001656 ORTHO05D005043 4.6e-164 581.6 387 71.8
HanXRQChr02g0046991 Helianthus annuus HOM05D001656 ORTHO05D005043 3.9e-163 578.6 372 75.0
Os07g0640200 Oryza sativa ssp. japonica HOM05D001656 ORTHO05D005043 1.5e-162 576.6 387 71.6
SGA_v2.0_scaffold14G07067 Striga asiatica HOM05D001656 ORTHO05D005043 1.6e-161 573.2 371 71.7
EL10Ac1g02312 Beta vulgaris HOM05D001656 ORTHO05D005043 2.1e-161 572.8 381 71.4
MBI16_g05037_MAGBIO Magnolia biondii HOM05D001656 ORTHO05D005043 2.4e-160 569.3 373 73.5
Peaxi162Scf01174g00119 Petunia axillaris HOM05D001656 ORTHO05D005043 9.0e-160 567.4 348 77.3
MELO3C019781.2 Cucumis melo HOM05D001656 ORTHO05D005043 2.0e-159 566.2 402 71.1
FAN08G0520 Fragaria x ananassa HOM05D001656 ORTHO05D003489 2.2e-158 562.8 378 72.2
SEGI_21864 Sequoiadendron giganteum HOM05D001656 ORTHO05D005043 3.2e-157 558.9 392 68.9
Hund05240 Selenicereus undatus HOM05D001656 ORTHO05D005043 5.4e-157 558.1 388 70.4
Nitab4.5_0003791g0040 Nicotiana tabacum HOM05D001656 ORTHO05D005043 9.3e-157 557.4 418 66.5
Pp3c13_15890 Physcomitrium patens HOM05D001656 ORTHO05D005043 4.0e-152 542.0 388 65.2
Dinv44906 Davidia involucrata HOM05D001656 ORTHO05D005043 4.2e-149 531.9 323 79.3
Manes.05G186400 Manihot esculenta HOM05D001656 ORTHO05D005043 8.2e-145 517.7 322 77.0
EL10Ac1g02313 Beta vulgaris HOM05D001656 ORTHO05D005043 3.1e-144 515.8 391 66.8
Mapoly0152s0012 Marchantia polymorpha HOM05D001656 ORTHO05D005043 3.1e-144 515.8 386 63.0
PSO210G2052 Papaver somniferum HOM05D001656 ORTHO05D005043 1.2e-140 503.8 322 73.9
Os12g0633000 Oryza sativa ssp. japonica HOM05D001656 ORTHO05D005043 3.5e-140 502.3 388 63.1
FAN08G2664 Fragaria x ananassa HOM05D001656 ORTHO05D005043 1.0e-139 500.7 395 64.1
Oeu034830.1 Olea europaea HOM05D001656 ORTHO05D005043 1.4e-136 490.3 308 77.3
Pp3c4_10480 Physcomitrium patens HOM05D001656 ORTHO05D005043 1.6e-132 476.9 387 57.4
SMO339G0045 Selaginella moellendorffii HOM05D001656 ORTHO05D005043 2.3e-131 473.0 390 60.8
AagrBONN_evm.TU.Sc2ySwM_228.1076 Anthoceros agrestis HOM05D001656 ORTHO05D005043 2.2e-118 429.9 386 55.4
AUR62034953 Chenopodium quinoa HOM05D001656 ORTHO05D005043 3.2e-117 426.0 292 68.8
Pp3c4_10497 Physcomitrium patens HOM05D001656 ORTHO05D005043 8.5e-110 401.4 323 58.2
SpUn0078_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 1.3e-102 377.5 245 73.5
Glyma.06G090401 Glycine max HOM05D001656 ORTHO05D005043 2.5e-101 373.2 240 79.2
Oeu011631.2 Olea europaea HOM05D001656 ORTHO05D005043 7.2e-101 371.7 238 75.6
HPP92_019867 Vanilla planifolia HOM05D001656 ORTHO05D005043 7.2e-93 345.1 267 64.4
CBR_g40751 Chara braunii HOM05D001656 ORTHO05D005043 9.2e-80 301.6 263 58.6
FAN04G1176 Fragaria x ananassa HOM05D001656 ORTHO05D005043 1.9e-69 267.3 170 72.9
unitig_736.g22951 Utricularia gibba HOM05D001656 ORTHO05D005043 7.6e-66 255.4 155 76.8
CARHR293240 Cardamine hirsuta HOM05D001656 ORTHO05D005043 1.6e-60 237.7 155 71.6
Hma1.2p1_1281F.1_g272610 Hydrangea macrophylla HOM05D001656 ORTHO05D005043 8.9e-59 231.9 124 84.7
Gorai.010G169800 Gossypium raimondii HOM05D001656 ORTHO05D005043 3.9e-54 216.5 138 76.1
Gohir.D06G145701 Gossypium hirsutum HOM05D001656 ORTHO05D005043 9.6e-53 211.8 137 73.7
Gohir.D13G037000 Gossypium hirsutum HOM05D001656 ORTHO05D005043 2.8e-52 210.3 139 73.4
Gorai.013G041400 Gossypium raimondii HOM05D001656 ORTHO05D005043 3.6e-52 209.9 139 72.7
Atru.chr7.541 Acer truncatum HOM05D001656 ORTHO05D005043 3.8e-49 199.9 180 58.3
unitig_736.g22950 Utricularia gibba HOM05D001656 ORTHO05D005043 1.1e-48 198.4 140 68.6
Gorai.010G172000 Gossypium raimondii HOM05D001656 ORTHO05D005043 7.1e-48 195.7 128 74.2
Oeu035949.1 Olea europaea HOM05D001656 ORTHO05D005043 7.6e-42 175.6 102 79.4
HPP92_028451 Vanilla planifolia HOM05D001656 ORTHO05D005043 5.4e-40 169.5 105 76.2
Dinv26408 Davidia involucrata HOM05D001656 ORTHO05D005043 6.9e-35 152.5 98 74.5
Dinv14696 Davidia involucrata HOM05D001656 ORTHO05D005043 8.4e-33 145.6 116 61.2
Atru.chr13.2595 Acer truncatum HOM05D001656 ORTHO05D005043 4.5e-26 123.2 106 60.4
Cc01_g04230 Coffea canephora HOM05D001656 ORTHO05D005043 3.1e-19 100.5 63 74.6
Cc11_g07750 Coffea canephora HOM05D001656 ORTHO05D005043 4.1e-19 100.1 71 64.8
Cc04_g15120 Coffea canephora HOM05D001656 ORTHO05D005043 5.3e-19 99.8 63 73.0
Gorai.004G152700 Gossypium raimondii HOM05D001656 ORTHO05D005043 1.5e-18 98.2 63 74.6
Gohir.D08G147150 Gossypium hirsutum HOM05D001656 ORTHO05D005043 3.4e-18 97.1 63 74.6
Cc02_g27750 Coffea canephora HOM05D001656 ORTHO05D005043 1.3e-17 95.1 63 69.8
HanXRQChr08g0210401 Helianthus annuus HOM05D001656 ORTHO05D005043 5.1e-14 83.2 57 63.2
Cc08_g09760 Coffea canephora HOM05D001656 ORTHO05D005043 1.7e-12 78.2 54 68.5
Cre07.g321100 Chlamydomonas reinhardtii HOM05D001656 ORTHO05D014814 1.4e-11 75.1 352 25.0
CBR_g50937 Chara braunii HOM05D001656 ORTHO05D005043 2.0e-10 71.2 54 59.3
MCO10G102 Micromonas commoda HOM05D001656 ORTHO05D014814 3.2e-08 63.9 278 23.7


User provided reference genes

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