Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g090880 Pisum sativum HOM05D008176 ORTHO05D004477 3.4e-75 285.0 157 100.0
Medtr3g086830 Medicago truncatula HOM05D008176 ORTHO05D004477 1.0e-55 220.3 157 72.6
TPR.G16006 Trifolium pratense HOM05D008176 ORTHO05D004477 2.2e-50 202.6 158 70.3
Ca_16509_v3 Cicer arietinum L. HOM05D008176 ORTHO05D004477 1.4e-44 183.3 157 65.0
Glyma.11G242100 Glycine max HOM05D008176 ORTHO05D004477 6.3e-29 131.3 143 56.6
Glyma.18G015000 Glycine max HOM05D008176 ORTHO05D004477 6.5e-26 121.3 147 52.4
Phvul.001G253900 Phaseolus vulgaris HOM05D008176 ORTHO05D004477 1.6e-24 116.7 154 51.3
VMungo1383G1959 Vigna mungo HOM05D008176 ORTHO05D004477 8.0e-24 114.4 152 48.0
Lalb_Chr11g0075471 Lupinus albus HOM05D008176 ORTHO05D004477 5.2e-23 111.7 146 46.6
Ca_08988_v3 Cicer arietinum L. HOM05D008176 ORTHO05D004477 3.5e-19 99.0 152 42.1
Psat7g056440 Pisum sativum HOM05D008176 ORTHO05D004477 5.5e-17 91.7 153 42.5
Medtr8g089920 Medicago truncatula HOM05D008176 ORTHO05D004477 6.1e-16 88.2 153 41.2
TPR.G6203 Trifolium pratense HOM05D008176 ORTHO05D004477 6.8e-15 84.7 153 39.2
Glyma.05G175800 Glycine max HOM05D008176 ORTHO05D004477 2.0e-14 83.2 150 39.3
Glyma.08G133100 Glycine max HOM05D008176 ORTHO05D004477 3.4e-14 82.4 151 42.4
Manes.12G129900 Manihot esculenta HOM05D008176 ORTHO05D004477 2.8e-13 79.3 136 39.0
TAR625G0942 Trochodendron aralioides HOM05D008046 ORTHO05D004477 3.7e-13 79.0 144 39.6
Phvul.002G260800 Phaseolus vulgaris HOM05D008176 ORTHO05D004477 6.3e-13 78.2 149 39.6
Lj4g0008028 Lotus japonicus HOM05D008176 ORTHO05D004477 4.1e-12 75.5 143 39.2
QL06p048130 Quercus lobata HOM05D008176 ORTHO05D004477 9.2e-12 74.3 139 36.0
Lalb_Chr12g0203981 Lupinus albus HOM05D008176 ORTHO05D004477 5.9e-11 71.6 146 40.4
CiPaw.03G145800 Carya illinoinensis HOM05D008176 ORTHO05D004477 3.8e-10 68.9 144 34.0
CiPaw.04G103600 Carya illinoinensis HOM05D008176 ORTHO05D004477 8.6e-10 67.8 135 34.8
Haze_24851 Corylus avellana HOM05D008176 ORTHO05D004477 4.3e-09 65.5 137 34.3
Potri.005G072000 Populus trichocarpa HOM05D008176 ORTHO05D004477 7.3e-09 64.7 134 40.3
Nn5g30002 Nelumbo nucifera HOM05D008176 ORTHO05D004477 9.5e-09 64.3 139 31.7
VMungo0251G0397 Vigna mungo HOM05D008176 ORTHO05D004477 1.2e-08 63.9 142 38.0
COL.COLO4_27295 Corchorus olitorius HOM05D008176 ORTHO05D004477 1.0e-07 60.8 138 33.3
Solyc11g010250.1 Solanum lycopersicum HOM05D008176 ORTHO05D004477 1.0e-07 60.8 149 33.6
Thecc.01G095600 Theobroma cacao HOM05D008176 ORTHO05D004477 1.0e-07 60.8 132 32.6
Sopen11g005030 Solanum pennellii HOM05D008176 ORTHO05D004477 1.4e-07 60.5 148 33.8
PGSC0003DMG400016149 Solanum tuberosum HOM05D008176 ORTHO05D004477 1.4e-07 60.5 148 33.1
TWI12G0518 Tripterygium wilfordii HOM05D008046 ORTHO05D004477 1.4e-07 60.5 148 33.1
Atru.chr3.1344 Acer truncatum HOM05D008176 ORTHO05D004477 3.0e-07 59.3 142 33.8
Gohir.A11G051100 Gossypium hirsutum HOM05D008176 ORTHO05D004477 3.0e-07 59.3 141 33.3
Gorai.007G059700 Gossypium raimondii HOM05D008176 ORTHO05D004477 4.0e-07 58.9 141 33.3
Nitab4.5_0000128g0240 Nicotiana tabacum HOM05D008176 ORTHO05D004477 4.0e-07 58.9 146 35.6
Ciclev10026640m.g Citrus clementina HOM05D008176 ORTHO05D004477 5.2e-07 58.5 148 33.8
Dinv13234 Davidia involucrata HOM05D008176 ORTHO05D004477 5.2e-07 58.5 137 35.0
FAN26G3011 Fragaria x ananassa HOM05D013332 ORTHO05D004477 5.2e-07 58.5 174 32.8
Nitab4.5_0012818g0010 Nicotiana tabacum HOM05D008176 ORTHO05D004477 5.2e-07 58.5 139 34.5
Duzib187G0825 Durio zibethinus HOM05D008176 ORTHO05D004477 6.8e-07 58.2 136 33.1
Duzib264G0386 Durio zibethinus HOM05D008176 ORTHO05D004477 8.9e-07 57.8 134 29.9
TWI53G0271 Tripterygium wilfordii HOM05D008176 ORTHO05D004477 8.9e-07 57.8 142 34.5
Sabra07G0080300 Salix brachista HOM05D008176 ORTHO05D004477 2.0e-06 56.6 134 33.6
GSVIVG01009081001 Vitis vinifera HOM05D008046 ORTHO05D004477 2.0e-06 56.6 144 30.6
Aqoxy6G00716 Aquilegia oxysepala HOM05D008046 ORTHO05D004477 2.6e-06 56.2 145 26.2
FAN28G1274 Fragaria x ananassa HOM05D013332 ORTHO05D004477 2.6e-06 56.2 167 32.9
RcHm_v2.0_Chr2g0112381 Rosa chinensis HOM05D013332 ORTHO05D004477 2.6e-06 56.2 168 32.1
Sed0019031 Sechium edule HOM05D022809 ORTHO05D025100 3.4e-06 55.8 132 31.1
Sc03g0000170 Simmondsia chinensis HOM05D031888 ORTHO05D004477 4.4e-06 55.5 105 38.1
PGSC0003DMG400016791 Solanum tuberosum HOM05D008176 ORTHO05D004477 4.4e-06 55.5 140 33.6
FAN23G0907 Fragaria x ananassa HOM05D013332 ORTHO05D004477 5.8e-06 55.1 167 32.3
Gohir.D11G054500 Gossypium hirsutum HOM05D008176 ORTHO05D004477 5.8e-06 55.1 145 31.7
QL02p002440 Quercus lobata HOM05D008046 ORTHO05D004477 5.8e-06 55.1 141 30.5
CSS0041686 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 7.5e-06 54.7 147 29.9
CSS0046665 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 7.5e-06 54.7 147 29.9
Hma1.2p1_1148F.1_g261600 Hydrangea macrophylla HOM05D008046 ORTHO05D004477 7.5e-06 54.7 143 31.5
SGA_v2.0_scaffold108G30894 Striga asiatica HOM05D008176 ORTHO05D004477 7.5e-06 54.7 141 35.5


User provided reference genes

Program Settings