Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g090600 Pisum sativum HOM05D006096 ORTHO05D007775 2.2e-227 792.0 395 100.0
Medtr3g087010 Medicago truncatula HOM05D006096 ORTHO05D007775 7.2e-207 723.8 395 90.6
TPR.G15994 Trifolium pratense HOM05D006096 ORTHO05D007775 2.3e-205 718.8 395 90.4
Lj6g0005810 Lotus japonicus HOM05D006096 ORTHO05D007775 4.9e-179 631.3 405 78.5
Glyma.18G015800 Glycine max HOM05D006096 ORTHO05D007775 2.3e-168 595.9 406 75.1
Glyma.11G241200 Glycine max HOM05D006096 ORTHO05D007775 2.4e-165 585.9 406 73.9
Phvul.001G253200 Phaseolus vulgaris HOM05D006096 ORTHO05D007775 2.4e-165 585.9 405 73.1
VMungo1383G2853 Vigna mungo HOM05D006096 ORTHO05D007775 4.2e-162 575.1 405 71.4
arahy.Tifrunner.gnm1.ann1.C4UPUA Arachis hypogaea HOM05D006096 ORTHO05D007775 1.7e-155 553.1 410 71.2
Lalb_Chr19g0127391 Lupinus albus HOM05D006096 ORTHO05D007775 8.4e-155 550.8 408 70.8
arahy.Tifrunner.gnm1.ann1.DD3ZZY Arachis hypogaea HOM05D006096 ORTHO05D007775 1.1e-154 550.4 437 67.7
Prupe.6G191000 Prunus persica HOM05D006096 ORTHO05D007775 2.1e-129 466.5 401 58.4
Atru.chr3.1373 Acer truncatum HOM05D006096 ORTHO05D007775 2.3e-128 463.0 403 59.6
Nn1g05418 Nelumbo nucifera HOM05D006096 ORTHO05D007775 1.3e-126 457.2 413 57.4
RcHm_v2.0_Chr2g0112761 Rosa chinensis HOM05D006096 ORTHO05D007775 2.2e-126 456.4 401 58.4
MD01G1033500 Malus domestica HOM05D006096 ORTHO05D007775 2.8e-126 456.1 400 58.5
TWI53G1189 Tripterygium wilfordii HOM05D006096 ORTHO05D007775 4.8e-126 455.3 404 59.9
Duzib187G1253 Durio zibethinus HOM05D006096 ORTHO05D007775 4.1e-125 452.2 396 58.3
CSS0046442 Camellia sinensis var. sinensis HOM05D006096 ORTHO05D007775 2.0e-124 449.9 412 58.5
vmacro18587 Vaccinium macrocarpon HOM05D006096 ORTHO05D007775 2.6e-124 449.5 406 56.7
Gohir.A10G085100 Gossypium hirsutum HOM05D006096 ORTHO05D007775 7.7e-124 448.0 400 57.5
Cpa.g.sc55.89 Carica papaya HOM05D006096 ORTHO05D007775 3.8e-123 445.7 405 56.5
MBI02_g02177_MAGBIO Magnolia biondii HOM05D006096 ORTHO05D007775 8.5e-123 444.5 406 57.6
Gorai.011G113400 Gossypium raimondii HOM05D006096 ORTHO05D007775 1.1e-122 444.1 400 56.2
FvH4_1g20510 Fragaria vesca HOM05D006096 ORTHO05D007775 1.4e-122 443.7 403 57.3
Potri.005G073600 Populus trichocarpa HOM05D006096 ORTHO05D007775 1.6e-121 440.3 405 56.8
Sc16g0000180 Simmondsia chinensis HOM05D006096 ORTHO05D007775 2.1e-121 439.9 401 56.9
Eucgr.H04751 Eucalyptus grandis HOM05D006096 ORTHO05D007775 3.0e-120 436.0 402 55.5
Ca_16518_v3 Cicer arietinum L. HOM05D006096 ORTHO05D007775 5.1e-120 435.3 298 75.8
Lsat_1_v5_gn_5_34320 Lactuca sativa HOM05D006096 ORTHO05D007775 7.4e-119 431.4 399 56.9
CANSAT01G2346 Cannabis sativa HOM05D006096 ORTHO05D007775 1.3e-118 430.6 447 51.5
PGSC0003DMG400016160 Solanum tuberosum HOM05D006096 ORTHO05D007775 2.2e-118 429.9 402 57.5
Sopen11g004830 Solanum pennellii HOM05D006096 ORTHO05D007775 3.4e-116 422.5 402 57.2
AT5G10320 Arabidopsis thaliana HOM05D006096 ORTHO05D007775 4.5e-116 422.2 400 53.8
Cc07_g14840 Coffea canephora HOM05D006096 ORTHO05D007775 1.7e-115 420.2 408 56.1
Aqoxy6G00746 Aquilegia oxysepala HOM05D006096 ORTHO05D007775 2.2e-115 419.9 397 54.4
EL10Ac6g15136 Beta vulgaris HOM05D006096 ORTHO05D007775 3.8e-115 419.1 442 52.3
C09p67070 Brassica napus HOM05D006096 ORTHO05D007775 3.8e-115 419.1 402 52.7
BolC9t59480H Brassica oleracea HOM05D006096 ORTHO05D007775 6.5e-115 418.3 405 53.3
BcaC04g19312 Brassica carinata HOM05D006096 ORTHO05D007775 2.5e-114 416.4 405 52.8
AL6G20820 Arabidopsis lyrata HOM05D006096 ORTHO05D007775 7.2e-114 414.8 409 52.8
TAR625G1553 Trochodendron aralioides HOM05D006096 ORTHO05D007775 1.2e-113 414.1 356 60.4
BcaB08g37116 Brassica carinata HOM05D006096 ORTHO05D007775 8.0e-113 411.4 411 52.8
AUR62001986 Chenopodium quinoa HOM05D006096 ORTHO05D007775 8.0e-113 411.4 456 50.9
Sed0027583 Sechium edule HOM05D006096 ORTHO05D007775 1.4e-112 410.6 399 53.9
A10p27260 Brassica napus HOM05D006096 ORTHO05D007775 1.8e-112 410.2 411 51.8
BraA10t44776Z Brassica rapa HOM05D006096 ORTHO05D007775 3.9e-112 409.1 408 52.0
COL.COLO4_27275 Corchorus olitorius HOM05D006096 ORTHO05D007775 8.8e-112 407.9 403 54.1
Hund13600 Selenicereus undatus HOM05D006096 ORTHO05D007775 7.4e-111 404.8 480 48.3
Aa31LG3G16830 Aethionema arabicum HOM05D006096 ORTHO05D007775 9.7e-111 404.4 408 52.0
PSO210G0897 Papaver somniferum HOM05D006096 ORTHO05D007775 1.7e-110 403.7 400 52.8
Migut.H02345 Erythranthe guttata HOM05D006096 ORTHO05D007775 2.2e-110 403.3 396 54.8
ECA246G2908 Erigeron canadensis HOM05D006096 ORTHO05D007775 1.1e-109 401.0 411 53.3
Actinidia28854 Actinidia chinensis HOM05D006096 ORTHO05D007775 1.4e-109 400.6 403 53.8
Oeu033049.1 Olea europaea HOM05D006096 ORTHO05D007775 7.0e-109 398.3 365 57.0
Peaxi162Scf00381g01013 Petunia axillaris HOM05D006096 ORTHO05D007775 3.5e-108 396.0 401 52.6
ATR0684G225 Amborella trichopoda HOM05D006096 ORTHO05D007775 1.7e-107 393.7 412 50.7
CAN.G905.37 Capsicum annuum HOM05D006096 ORTHO05D007775 2.2e-107 393.3 366 57.9
FAN23G0863 Fragaria x ananassa HOM05D006096 ORTHO05D007775 1.2e-105 387.5 403 51.6
ClCG07G017370 Citrullus lanatus HOM05D006096 ORTHO05D007775 4.1e-101 372.5 525 41.9
Os04g0451100 Oryza sativa ssp. japonica HOM05D006096 ORTHO05D007775 3.2e-98 362.8 417 49.6
PSO447G0355 Papaver somniferum HOM05D006096 ORTHO05D007775 4.0e-96 355.9 398 48.0
Rhsim08G0012600 Rhododendron simsii HOM05D006096 ORTHO05D007775 4.0e-96 355.9 405 48.6
QL06p048476 Quercus lobata HOM05D006096 ORTHO05D007775 6.8e-96 355.1 326 58.3
SGA_v2.0_scaffold111G31503 Striga asiatica HOM05D006096 ORTHO05D007775 7.5e-95 351.7 404 49.8
Thhalv10013818m.g Eutrema salsugineum HOM05D006096 ORTHO05D007775 2.2e-94 350.1 404 47.5
HPP92_011214 Vanilla planifolia HOM05D006096 ORTHO05D007775 1.4e-93 347.4 417 47.7
FAN19G2919 Fragaria x ananassa HOM05D006096 ORTHO05D007775 1.6e-92 344.0 392 49.7
Sabra05G0060100 Salix brachista HOM05D006096 ORTHO05D007775 2.0e-92 343.6 381 50.9
BcaC04g19315 Brassica carinata HOM05D006096 ORTHO05D007775 3.5e-92 342.8 305 57.7
Zm00001eb081250 Zea mays HOM05D006096 ORTHO05D007775 5.5e-90 335.5 281 60.1
CARHR202960 Cardamine hirsuta HOM05D006096 ORTHO05D007775 5.2e-88 328.9 281 56.6
CARHR202970 Cardamine hirsuta HOM05D006096 ORTHO05D007775 8.9e-88 328.2 306 53.9
Thecc.01G097900 Theobroma cacao HOM05D006096 ORTHO05D007775 1.5e-87 327.4 303 57.1
Haze_24882 Corylus avellana HOM05D006096 ORTHO05D007775 3.4e-87 326.2 447 44.7
QL06p048506 Quercus lobata HOM05D006096 ORTHO05D007775 4.4e-87 325.9 326 54.6
Manes.13G095500 Manihot esculenta HOM05D006096 ORTHO05D007775 2.2e-86 323.6 313 53.7
Dinv08841 Davidia involucrata HOM05D006096 ORTHO05D007775 4.5e-84 315.8 307 57.7
Cfa002624 Carpinus fangiana HOM05D006096 ORTHO05D007775 1.0e-83 314.7 312 53.5
unitig_899.g14550 Utricularia gibba HOM05D006096 ORTHO05D007775 8.6e-83 311.6 447 43.6
Nitab4.5_0004570g0020 Nicotiana tabacum HOM05D006096 ORTHO05D007775 9.5e-82 308.1 290 56.2
CiPaw.03G143900 Carya illinoinensis HOM05D006096 ORTHO05D007775 1.2e-81 307.8 328 52.7
Ciclev10026196m.g Citrus clementina HOM05D006096 ORTHO05D007775 2.8e-81 306.6 308 53.6
SalBow3G4176 Salvia bowleyana HOM05D006096 ORTHO05D007775 1.8e-80 303.9 433 43.6
Gohir.D10G103900 Gossypium hirsutum HOM05D006096 ORTHO05D007775 8.9e-80 301.6 306 52.0
CsaV3_4G004600 Cucumis sativus L. HOM05D006096 ORTHO05D007775 1.3e-78 297.7 296 54.1
Pp3c26_3770 Physcomitrium patens HOM05D006096 ORTHO05D007775 2.7e-76 290.0 426 39.2
HanXRQChr02g0032011 Helianthus annuus HOM05D006096 ORTHO05D007775 6.6e-75 285.4 295 54.2
Sp6g33110 Schrenkiella parvula HOM05D006096 ORTHO05D007775 6.6e-75 285.4 309 50.5
CsaV3_UNG122970 Cucumis sativus L. HOM05D006096 ORTHO05D007775 3.3e-74 283.1 320 50.0
Solyc11g009060.2 Solanum lycopersicum HOM05D006096 ORTHO05D007775 1.2e-73 281.2 307 52.4
Haze_24873 Corylus avellana HOM05D006096 ORTHO05D007775 1.4e-72 277.7 419 42.7
MELO3C017606.2 Cucumis melo HOM05D006096 ORTHO05D007775 9.8e-71 271.6 570 34.4
AUR62003818 Chenopodium quinoa HOM05D006096 ORTHO05D007775 2.9e-70 270.0 277 52.0
FAN28G1526 Fragaria x ananassa HOM05D006096 ORTHO05D007775 2.1e-68 263.8 410 43.4
DCAR_014211 Daucus carota HOM05D006096 ORTHO05D007775 2.7e-68 263.5 289 51.6
Pp3c3_14090 Physcomitrium patens HOM05D006096 ORTHO05D007775 3.9e-67 259.6 400 39.5
Carub.0006s0879 Capsella rubella HOM05D006096 ORTHO05D007775 1.1e-66 258.1 293 47.1
Mapoly0077s0016 Marchantia polymorpha HOM05D006096 ORTHO05D007775 1.1e-64 251.5 467 34.7
CBR_g26374 Chara braunii HOM05D006096 ORTHO05D007775 4.3e-58 229.6 326 39.9
AagrBONN_evm.TU.Sc2ySwM_344.1220 Anthoceros agrestis HOM05D006096 ORTHO05D007775 5.8e-55 219.2 307 42.7
HanXRQChr15g0477621 Helianthus annuus HOM05D006096 ORTHO05D007775 1.4e-53 214.5 288 43.1
CsaV3_UNG160190 Cucumis sativus L. HOM05D006096 ORTHO05D007775 9.2e-53 211.8 152 67.1
CBR_g53530 Chara braunii HOM05D006096 ORTHO05D007775 1.1e-50 204.9 259 40.5
CARHR202980 Cardamine hirsuta HOM05D006096 ORTHO05D007775 7.3e-50 202.2 252 43.7
Nitab4.5_0000743g0130 Nicotiana tabacum HOM05D006096 ORTHO05D007775 6.2e-49 199.1 389 37.0
SMO301G0024 Selaginella moellendorffii HOM05D006096 ORTHO05D007775 8.4e-46 188.7 187 51.3
MSTRG.23356 Avicennia marina HOM05D006096 ORTHO05D007775 2.3e-43 180.6 299 42.1
CsaV3_UNG223570 Cucumis sativus L. HOM05D006096 ORTHO05D007775 7.6e-39 165.6 232 40.9
GSVIVG01006632001 Vitis vinifera HOM05D006096 ORTHO05D007775 1.3e-35 154.8 101 71.3
CDE06G0254 Ceratophyllum demersum HOM05D006096 ORTHO05D007775 1.8e-35 154.5 347 32.3
QL06p048511 Quercus lobata HOM05D006096 ORTHO05D007775 5.1e-35 152.9 97 74.2
Cre17.g719050 Chlamydomonas reinhardtii HOM05D006096 ORTHO05D007775 5.6e-34 149.4 277 35.0
Carub.0006s0878 Capsella rubella HOM05D006096 ORTHO05D007775 2.1e-25 120.9 85 67.1
Gohir.D10G103800 Gossypium hirsutum HOM05D006096 ORTHO05D007775 1.8e-24 117.9 78 69.2
BcaB02g08416 Brassica carinata HOM05D006096 ORTHO05D007775 6.9e-24 115.9 88 67.0
HanXRQChr02g0032001 Helianthus annuus HOM05D006096 ORTHO05D007775 3.5e-20 103.6 65 73.8
SEGI_01830 Sequoiadendron giganteum HOM05D006096 ORTHO05D007775 3.0e-19 100.5 114 44.7
Ah.02g123840 Amaranthus hybridus HOM05D006096 ORTHO05D007775 2.0e-15 87.8 65 60.0
Cc08_g12120 Coffea canephora HOM05D005131 ORTHO05D003188 4.5e-15 86.7 238 31.9
Cc03_g11790 Coffea canephora HOM05D006096 ORTHO05D007775 4.6e-12 76.6 86 47.7
Actinidia28243 Actinidia chinensis HOM05D006096 ORTHO05D009823 1.0e-11 75.5 172 34.9
CsaV3_UNG124970 Cucumis sativus L. HOM05D006096 ORTHO05D007775 1.4e-11 75.1 67 53.7
SEGI_02986 Sequoiadendron giganteum HOM05D006096 ORTHO05D007775 6.7e-11 72.8 61 55.7
Nitab4.5_0004570g0030 Nicotiana tabacum HOM05D006096 ORTHO05D007775 6.9e-08 62.8 77 42.9
CsaV3_UNG160180 Cucumis sativus L. HOM05D006096 ORTHO05D007775 2.0e-07 61.2 90 40.0
RcHm_v2.0_Chr4g0406191 Rosa chinensis HOM05D006096 ORTHO05D007775 4.5e-07 60.1 56 58.9


User provided reference genes

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