Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g089720 Pisum sativum HOM05D003474 ORTHO05D003971 9.0e-110 400.2 193 100.0
Psat5g089880 Pisum sativum HOM05D003474 ORTHO05D003971 1.3e-100 369.8 185 96.2
Psat5g089920 Pisum sativum HOM05D003474 ORTHO05D003971 4.6e-98 361.3 200 87.0
Psat5g089840 Pisum sativum HOM05D003474 ORTHO05D003971 6.9e-94 347.4 185 89.7
TPR.G17847 Trifolium pratense HOM05D003474 ORTHO05D003971 2.5e-91 339.0 200 82.5
TPR.G17834 Trifolium pratense HOM05D003474 ORTHO05D003971 6.0e-90 334.3 200 80.5
Medtr3g087275 Medicago truncatula HOM05D003474 ORTHO05D003971 7.9e-90 334.0 200 81.5
Medtr3g087280 Medicago truncatula HOM05D003474 ORTHO05D003971 7.9e-90 334.0 200 79.0
TPR.G17845 Trifolium pratense HOM05D003474 ORTHO05D003971 6.7e-89 330.9 200 79.5
TPR.G17835 Trifolium pratense HOM05D003474 ORTHO05D003971 1.6e-87 326.2 193 80.3
Medtr3g087278 Medicago truncatula HOM05D003474 ORTHO05D003971 2.0e-85 319.3 200 77.5
Psat5g089800 Pisum sativum HOM05D003474 ORTHO05D003971 4.5e-85 318.2 192 80.7
TPR.G17848 Trifolium pratense HOM05D003474 ORTHO05D003971 4.5e-85 318.2 200 77.5
TPR.G17829 Trifolium pratense HOM05D003474 ORTHO05D003971 3.8e-84 315.1 200 75.0
Medtr3g087325 Medicago truncatula HOM05D003474 ORTHO05D003971 1.1e-83 313.5 200 76.5
Ca_16531_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 9.3e-83 310.5 200 77.0
Ca_16533_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 1.6e-82 309.7 200 75.5
Medtr3g087270 Medicago truncatula HOM05D003474 ORTHO05D003971 1.6e-82 309.7 200 74.5
Ca_16532_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 7.9e-82 307.4 200 76.0
Medtr3g087330 Medicago truncatula HOM05D003474 ORTHO05D003971 3.9e-81 305.1 200 73.5
Ca_16530_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 6.7e-81 304.3 200 76.0
Medtr3g087300 Medicago truncatula HOM05D003474 ORTHO05D003971 1.1e-64 250.4 190 66.8
TPR.G17838 Trifolium pratense HOM05D003474 ORTHO05D003971 6.3e-63 244.6 200 63.5
Glyma.18G017500 Glycine max HOM05D003474 ORTHO05D003971 2.1e-58 229.6 203 57.1
Glyma.11G239900 Glycine max HOM05D003474 ORTHO05D003971 2.2e-55 219.5 203 54.7
VMungo1383G0909 Vigna mungo HOM05D003474 ORTHO05D003971 5.3e-54 214.9 204 54.4
Lj6g0005521 Lotus japonicus HOM05D003474 ORTHO05D003971 2.0e-53 213.0 200 56.5
Lj6g0019645 Lotus japonicus HOM05D003474 ORTHO05D003971 2.6e-53 212.6 200 56.0
Lalb_Chr23g0277351 Lupinus albus HOM05D003474 ORTHO05D003971 3.2e-51 205.7 197 56.3
Lj6g0012852 Lotus japonicus HOM05D003474 ORTHO05D003971 3.6e-50 202.2 201 54.7
Lalb_Chr08g0231081 Lupinus albus HOM05D003474 ORTHO05D003971 1.2e-48 197.2 204 56.4
Lalb_Chr08g0231071 Lupinus albus HOM05D003474 ORTHO05D003971 7.5e-48 194.5 197 52.8
Phvul.001G251900 Phaseolus vulgaris HOM05D003474 ORTHO05D003971 1.0e-44 184.1 165 57.0
Potri.007G092300 Populus trichocarpa HOM05D003474 ORTHO05D003971 2.3e-36 156.4 197 44.7
CiPaw.04G099000 Carya illinoinensis HOM05D003474 ORTHO05D003971 8.6e-36 154.5 195 43.6
Sabra07G0076200 Salix brachista HOM05D003474 ORTHO05D003971 1.1e-35 154.1 197 44.7
Sabra07G0076300 Salix brachista HOM05D003474 ORTHO05D003971 1.1e-35 154.1 197 44.7
Sabra07G0075900 Salix brachista HOM05D003474 ORTHO05D003971 2.5e-35 152.9 197 44.2
Sabra07G0076000 Salix brachista HOM05D003474 ORTHO05D003971 2.5e-35 152.9 197 44.2
Sabra07G0076100 Salix brachista HOM05D003474 ORTHO05D003971 1.6e-34 150.2 197 43.7
FAN23G2065 Fragaria x ananassa HOM05D003474 ORTHO05D003971 2.1e-34 149.8 198 41.4
FvH4_1g20980 Fragaria vesca HOM05D003474 ORTHO05D003971 3.6e-34 149.1 198 41.4
QL06p049587 Quercus lobata HOM05D003474 ORTHO05D003971 8.0e-34 147.9 201 41.3
FAN19G2364 Fragaria x ananassa HOM05D003474 ORTHO05D003971 1.0e-33 147.5 201 40.3
RcHm_v2.0_Chr2g0114461 Rosa chinensis HOM05D003474 ORTHO05D003971 6.8e-33 144.8 198 38.9
FAN28G0803 Fragaria x ananassa HOM05D003474 ORTHO05D003971 1.2e-32 144.1 198 39.4
Prupe.6G186100 Prunus persica HOM05D003474 ORTHO05D003971 2.6e-32 142.9 202 42.1
QL06p049618 Quercus lobata HOM05D003474 ORTHO05D003971 4.4e-32 142.1 201 39.3
RcHm_v2.0_Chr2g0114471 Rosa chinensis HOM05D003474 ORTHO05D003971 4.4e-32 142.1 200 39.5
FAN26G3130 Fragaria x ananassa HOM05D003474 ORTHO05D003971 5.7e-32 141.7 198 40.4
Cfa002670 Carpinus fangiana HOM05D003474 ORTHO05D003971 7.5e-32 141.4 203 39.9
QL06p049633 Quercus lobata HOM05D003474 ORTHO05D003971 1.3e-31 140.6 200 40.5
Ciclev10027277m.g Citrus clementina HOM05D003474 ORTHO05D003971 4.9e-31 138.7 201 40.3
QL06p049593 Quercus lobata HOM05D003474 ORTHO05D003971 1.4e-30 137.1 201 39.8
CSS0038157 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 2.4e-30 136.3 208 38.9
Atru.chr4.70 Acer truncatum HOM05D003474 ORTHO05D003971 3.2e-30 136.0 228 38.6
Thecc.01G102400 Theobroma cacao HOM05D003474 ORTHO05D003971 7.0e-30 134.8 214 38.3
Lj4P889T19 Lonicera japonica HOM05D003474 ORTHO05D003971 9.2e-30 134.4 194 39.7
Potri.005G076100 Populus trichocarpa HOM05D003474 ORTHO05D003971 9.2e-30 134.4 203 39.4
Duzib187G1721 Durio zibethinus HOM05D003474 ORTHO05D003971 1.2e-29 134.0 213 41.3
Hma1.2p1_0047F.1_g027910 Hydrangea macrophylla HOM05D003474 ORTHO05D003971 1.2e-29 134.0 200 39.0
PGSC0003DMG400001891 Solanum tuberosum HOM05D003474 ORTHO05D003971 1.3e-28 130.6 206 38.3
TAR381G0511 Trochodendron aralioides HOM05D003474 ORTHO05D003971 2.9e-28 129.4 200 39.0
Gorai.007G239100 Gossypium raimondii HOM05D003474 ORTHO05D003971 5.0e-28 128.6 196 39.8
CiPaw.03G141500 Carya illinoinensis HOM05D003474 ORTHO05D003971 1.5e-27 127.1 205 38.5
CSS0002095 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 3.3e-27 125.9 213 36.2
TAR625G1533 Trochodendron aralioides HOM05D003474 ORTHO05D003971 3.3e-27 125.9 192 40.1
Nn1g05334 Nelumbo nucifera HOM05D003474 ORTHO05D003971 5.6e-27 125.2 197 37.1
CSS0044421 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 9.5e-27 124.4 213 35.7
Duzib147G1557 Durio zibethinus HOM05D003474 ORTHO05D003971 9.5e-27 124.4 210 38.1
Sed0016843 Sechium edule HOM05D003474 ORTHO05D003971 1.6e-26 123.6 197 40.1
Cc07_g15300 Coffea canephora HOM05D003474 ORTHO05D003971 2.1e-26 123.2 199 37.7
COL.COLO4_09957 Corchorus olitorius HOM05D003474 ORTHO05D003971 2.1e-26 123.2 209 38.3
CAN.G441.1 Capsicum annuum HOM05D003474 ORTHO05D003971 2.8e-26 122.9 203 37.9
Gohir.A11G201900 Gossypium hirsutum HOM05D003474 ORTHO05D003971 2.8e-26 122.9 200 37.5
Nn5g30135 Nelumbo nucifera HOM05D003474 ORTHO05D003971 2.8e-26 122.9 197 36.5
Atru.chr4.72 Acer truncatum HOM05D003474 ORTHO05D003971 3.6e-26 122.5 230 36.5
Atru.chr4.73 Acer truncatum HOM05D003474 ORTHO05D003971 3.6e-26 122.5 230 36.5
Aqoxy6G00810 Aquilegia oxysepala HOM05D003474 ORTHO05D003971 3.6e-26 122.5 197 36.5
CsaV3_6G045460 Cucumis sativus L. HOM05D003474 ORTHO05D003971 3.6e-26 122.5 196 39.8
Gohir.D11G221900 Gossypium hirsutum HOM05D003474 ORTHO05D003971 4.7e-26 122.1 200 38.5
CSS0039995 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 6.1e-26 121.7 212 34.9
CSS0009549 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 5.2e-25 118.6 213 34.3
Manes.12G135500 Manihot esculenta HOM05D003474 ORTHO05D003971 6.8e-25 118.2 211 37.0
Oeu002403.1 Olea europaea HOM05D003474 ORTHO05D003971 1.5e-24 117.1 200 35.5
TWI74G0170 Tripterygium wilfordii HOM05D003474 ORTHO05D003971 2.6e-24 116.3 203 38.4
Oeu056606.1 Olea europaea HOM05D003474 ORTHO05D003971 3.4e-24 115.9 198 36.9
Eucgr.I00429 Eucalyptus grandis HOM05D003474 ORTHO05D003971 4.4e-24 115.5 212 32.5
Eucgr.I00430 Eucalyptus grandis HOM05D003474 ORTHO05D003971 4.4e-24 115.5 212 32.5
ClCG01G018800 Citrullus lanatus HOM05D003474 ORTHO05D003971 7.5e-24 114.8 208 34.6
Nitab4.5_0000104g0070 Nicotiana tabacum HOM05D003474 ORTHO05D003971 7.5e-24 114.8 179 35.8
Nitab4.5_0000104g0120 Nicotiana tabacum HOM05D003474 ORTHO05D003971 7.5e-24 114.8 176 36.4
Peaxi162Scf00611g00012 Petunia axillaris HOM05D003474 ORTHO05D003971 7.5e-24 114.8 203 35.0
Haze_24940 Corylus avellana HOM05D003474 ORTHO05D003971 9.8e-24 114.4 169 37.3
PSO781G0183 Papaver somniferum HOM05D003474 ORTHO05D003971 1.7e-23 113.6 199 33.2
Sopen03g021520 Solanum pennellii HOM05D003474 ORTHO05D003971 3.7e-23 112.5 202 33.2
TAR625G0209 Trochodendron aralioides HOM05D003474 ORTHO05D003971 6.4e-23 111.7 201 35.3
Cfa002671 Carpinus fangiana HOM05D003474 ORTHO05D003971 8.3e-23 111.3 201 35.8
CSS0003854 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 1.1e-22 110.9 212 32.5
Lsat_1_v5_gn_5_43380 Lactuca sativa HOM05D003474 ORTHO05D003971 1.1e-22 110.9 200 35.5
Ah.02g122460 Amaranthus hybridus HOM05D003474 ORTHO05D003971 2.4e-22 109.8 214 32.7
CANSAT73G0001 Cannabis sativa HOM05D003474 ORTHO05D003971 2.4e-22 109.8 221 35.7
Lsat_1_v5_gn_5_43760 Lactuca sativa HOM05D003474 ORTHO05D003971 2.4e-22 109.8 215 34.0
Solyc03g078620.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 2.4e-22 109.8 207 32.9
Cpa.g.sc213.15 Carica papaya HOM05D003474 ORTHO05D003971 4.1e-22 109.0 198 36.4
Lsat_1_v5_gn_5_43140 Lactuca sativa HOM05D003474 ORTHO05D003971 5.4e-22 108.6 193 33.7
Lsat_1_v5_gn_5_43240 Lactuca sativa HOM05D003474 ORTHO05D003971 5.4e-22 108.6 193 33.7
PGSC0003DMG400021798 Solanum tuberosum HOM05D003474 ORTHO05D003971 9.2e-22 107.8 201 32.3
Rhsim08G0010000 Rhododendron simsii HOM05D003474 ORTHO05D003971 1.6e-21 107.1 198 33.3
Lsat_1_v5_gn_5_43280 Lactuca sativa HOM05D003474 ORTHO05D003971 2.7e-21 106.3 193 33.2
Lsat_1_v5_gn_5_43320 Lactuca sativa HOM05D003474 ORTHO05D003971 2.7e-21 106.3 193 32.6
PSO781G0331 Papaver somniferum HOM05D003474 ORTHO05D003971 4.6e-21 105.5 199 32.7
THA.LOC104804926 Tarenaya hassleriana HOM05D003474 ORTHO05D003971 6.0e-21 105.1 194 33.5
Dinv13182 Davidia involucrata HOM05D003474 ORTHO05D003971 1.0e-20 104.4 166 35.5
AUR62002014 Chenopodium quinoa HOM05D003474 ORTHO05D003971 1.3e-20 104.0 218 31.2
ECA246G4897 Erigeron canadensis HOM05D003474 ORTHO05D003971 1.3e-20 104.0 204 32.4
Nitab4.5_0016805g0010 Nicotiana tabacum HOM05D003474 ORTHO05D003971 1.3e-20 104.0 176 35.2
PSO781G0304 Papaver somniferum HOM05D003474 ORTHO05D003971 1.7e-20 103.6 205 31.7
EL10Ac6g15097 Beta vulgaris HOM05D003474 ORTHO05D003971 3.0e-20 102.8 210 32.4
PSO781G0184 Papaver somniferum HOM05D003474 ORTHO05D003971 3.0e-20 102.8 200 32.5
Aqoxy6G00809 Aquilegia oxysepala HOM05D003474 ORTHO05D003971 3.9e-20 102.4 189 31.7
MBI02_g08731_MAGBIO Magnolia biondii HOM05D003474 ORTHO05D003971 3.9e-20 102.4 203 31.0
Sabra05G0062700 Salix brachista HOM05D003474 ORTHO05D003971 6.6e-20 101.7 169 36.1
AUR62003788 Chenopodium quinoa HOM05D003474 ORTHO05D003971 8.6e-20 101.3 210 31.4
PSO541G6092 Papaver somniferum HOM05D003474 ORTHO05D003971 8.6e-20 101.3 199 31.7
CANSAT01G1468 Cannabis sativa HOM05D003474 ORTHO05D003971 1.1e-19 100.9 207 36.2
Sc16g0005640 Simmondsia chinensis HOM05D003474 ORTHO05D003971 1.9e-19 100.1 201 34.3
A10p27350 Brassica napus HOM05D003474 ORTHO05D003971 3.3e-19 99.4 198 31.8
CANSAT01G0924 Cannabis sativa HOM05D003474 ORTHO05D003971 3.3e-19 99.4 207 36.2
AL8G42540 Arabidopsis lyrata HOM05D003474 ORTHO05D003971 4.3e-19 99.0 198 30.3
CARHR293740 Cardamine hirsuta HOM05D003474 ORTHO05D003971 4.3e-19 99.0 200 30.5
Sabra07G0076400 Salix brachista HOM05D003474 ORTHO05D003971 4.3e-19 99.0 182 35.7
Thhalv10005637m.g Eutrema salsugineum HOM05D003474 ORTHO05D003971 9.5e-19 97.8 198 31.3
Sp2g28110 Schrenkiella parvula HOM05D003474 ORTHO05D003971 9.5e-19 97.8 200 32.5
BraA06t26118Z Brassica rapa HOM05D003474 ORTHO05D003971 2.8e-18 96.3 202 32.2
PGR004G1795 Punica granatum HOM05D003474 ORTHO05D003971 3.6e-18 95.9 216 31.5
BcaC04g19322 Brassica carinata HOM05D003474 ORTHO05D003971 4.7e-18 95.5 197 29.9
C09p67210 Brassica napus HOM05D003474 ORTHO05D003971 4.7e-18 95.5 197 29.9
SalBow5G0419 Salvia bowleyana HOM05D003474 ORTHO05D003971 4.7e-18 95.5 198 33.3
SalBow5G4466 Salvia bowleyana HOM05D003474 ORTHO05D003971 4.7e-18 95.5 198 33.3
BcaB08g37131 Brassica carinata HOM05D003474 ORTHO05D003971 6.2e-18 95.1 202 30.7
DCAR_003501 Daucus carota HOM05D003474 ORTHO05D003971 6.2e-18 95.1 196 31.1
SalBow5G3228 Salvia bowleyana HOM05D003474 ORTHO05D003971 6.2e-18 95.1 205 34.6
AT5G10210 Arabidopsis thaliana HOM05D003474 ORTHO05D003971 1.4e-17 94.0 194 32.0
Carub.0008s2587 Capsella rubella HOM05D003474 ORTHO05D003971 1.4e-17 94.0 201 31.8
AT5G65030 Arabidopsis thaliana HOM05D003474 ORTHO05D003971 1.8e-17 93.6 198 29.3
DCAR_003502 Daucus carota HOM05D003474 ORTHO05D003971 1.8e-17 93.6 198 33.3
BolC9t59492H Brassica oleracea HOM05D003474 ORTHO05D003971 2.3e-17 93.2 198 30.3
Actinidia28867 Actinidia chinensis HOM05D003474 ORTHO05D003971 3.1e-17 92.8 178 36.5
BcaC01g02734 Brassica carinata HOM05D003474 ORTHO05D003971 4.0e-17 92.4 201 30.3
C03p61160 Brassica napus HOM05D003474 ORTHO05D003971 4.0e-17 92.4 201 30.3
BolC3t18376H Brassica oleracea HOM05D003474 ORTHO05D003971 4.0e-17 92.4 201 30.3
BraA10t44786Z Brassica rapa HOM05D003474 ORTHO05D003971 1.2e-16 90.9 198 29.3
AL6G20700 Arabidopsis lyrata HOM05D003474 ORTHO05D003971 1.5e-16 90.5 193 31.6
BcaB02g09856 Brassica carinata HOM05D003474 ORTHO05D003971 2.0e-16 90.1 202 30.7
Migut.H02362 Erythranthe guttata HOM05D003474 ORTHO05D003971 3.4e-16 89.4 212 29.7
QL06p049605 Quercus lobata HOM05D003474 ORTHO05D003971 5.8e-16 88.6 105 42.9
Sp6g33190 Schrenkiella parvula HOM05D003474 ORTHO05D003971 7.5e-16 88.2 198 30.8
Carub.0006s0867 Capsella rubella HOM05D003474 ORTHO05D003971 1.7e-15 87.0 192 29.2
A06p31850 Brassica napus HOM05D003474 ORTHO05D003971 2.2e-15 86.7 158 31.6
CARHR203080 Cardamine hirsuta HOM05D003474 ORTHO05D003971 6.4e-15 85.1 192 29.7
Aa31LG3G16930 Aethionema arabicum HOM05D003474 ORTHO05D003971 8.3e-15 84.7 198 31.3
Thhalv10014734m.g Eutrema salsugineum HOM05D003474 ORTHO05D003971 8.3e-15 84.7 192 30.2
SalBow5G1505 Salvia bowleyana HOM05D003474 ORTHO05D003971 1.6e-13 80.5 106 37.7
Sopen04g025000 Solanum pennellii HOM05D003474 ORTHO05D003971 1.3e-12 77.4 131 38.9
DCAR_003503 Daucus carota HOM05D003474 ORTHO05D003971 8.6e-12 74.7 178 30.3
Solyc04g055130.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 1.2e-10 70.9 131 35.9
PGSC0003DMG400001890 Solanum tuberosum HOM05D003474 ORTHO05D003971 1.6e-10 70.5 141 34.8
Nitab4.5_0006517g0020 Nicotiana tabacum HOM05D003474 ORTHO05D003971 8.1e-10 68.2 140 34.3
Solyc04g055140.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 1.8e-09 67.0 137 34.3
PGSC0003DMG400001892 Solanum tuberosum HOM05D003474 ORTHO05D003971 1.8e-09 67.0 130 35.4
MELO3C007759.2 Cucumis melo HOM05D003474 ORTHO05D003971 3.1e-09 66.2 152 32.9
Peaxi162Scf00212g00111 Petunia axillaris HOM05D003474 ORTHO05D003971 4.0e-09 65.9 80 41.2
SalBow5G5729 Salvia bowleyana HOM05D003474 ORTHO05D003971 5.2e-09 65.5 172 33.1
BcaB08g37129 Brassica carinata HOM05D003474 ORTHO05D003971 1.2e-08 64.3 99 31.3
Peaxi162Scf00212g00105 Petunia axillaris HOM05D003474 ORTHO05D003971 2.0e-08 63.5 129 32.6
Sopen04g025010 Solanum pennellii HOM05D003474 ORTHO05D003971 5.8e-08 62.0 137 33.6
BcaC04g19323 Brassica carinata HOM05D003474 ORTHO05D003971 3.7e-07 59.3 88 31.8
Solyc04g055150.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 3.7e-07 59.3 137 32.1
DCAR_003504 Daucus carota HOM05D003474 ORTHO05D003971 3.2e-06 56.2 169 28.4
Lalb_Chr23g0277401 Lupinus albus HOM05D003474 ORTHO05D003971 3.2e-06 56.2 48 58.3
Nitab4.5_0000897g0040 Nicotiana tabacum HOM05D003474 ORTHO05D003971 4.1e-06 55.8 101 32.7


User provided reference genes

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