Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g089640 Pisum sativum HOM05D004657 ORTHO05D005562 1.8e-203 712.6 415 100.0
Medtr3g087360 Medicago truncatula HOM05D004657 ORTHO05D005562 3.1e-144 515.8 449 73.5
VMungo1383G1250 Vigna mungo HOM05D004657 ORTHO05D005562 1.7e-121 440.3 446 62.8
Lj6g0008145 Lotus japonicus HOM05D004657 ORTHO05D005562 2.1e-119 433.3 439 62.2
Glyma.11G239700 Glycine max HOM05D004657 ORTHO05D005562 2.7e-111 406.4 458 58.5
Prupe.6G184700 Prunus persica HOM05D004657 ORTHO05D005562 1.3e-110 404.1 448 60.3
FAN28G0529 Fragaria x ananassa HOM05D004657 ORTHO05D005562 1.1e-107 394.4 449 60.8
FAN19G1231 Fragaria x ananassa HOM05D004657 ORTHO05D005562 1.4e-107 394.0 444 61.7
Glyma.18G017700 Glycine max HOM05D004657 ORTHO05D005562 1.5e-106 390.6 460 60.2
FAN26G2002 Fragaria x ananassa HOM05D004657 ORTHO05D005562 7.1e-104 381.7 446 60.5
RcHm_v2.0_Chr2g0114541 Rosa chinensis HOM05D004657 ORTHO05D005562 3.9e-102 375.9 243 77.4
COL.COLO4_09954 Corchorus olitorius HOM05D004657 ORTHO05D005562 5.1e-102 375.6 255 74.5
Cfa002676 Carpinus fangiana HOM05D004657 ORTHO05D005562 6.6e-102 375.2 465 56.3
Aa31LG6G15430 Aethionema arabicum HOM05D004657 ORTHO05D005562 3.3e-101 372.9 365 64.4
Lj4g0007261 Lotus japonicus HOM05D004657 ORTHO05D005562 4.3e-101 372.5 491 55.6
Hma1.2p1_0308F.1_g120150 Hydrangea macrophylla HOM05D004657 ORTHO05D005562 2.8e-100 369.8 434 53.2
Thhalv10026765m.g Eutrema salsugineum HOM05D004657 ORTHO05D005562 3.6e-100 369.4 265 72.5
VMungo0251G2127 Vigna mungo HOM05D004657 ORTHO05D005562 6.2e-100 368.6 478 52.9
FAN23G0181 Fragaria x ananassa HOM05D004657 ORTHO05D005562 8.1e-100 368.2 447 59.1
AT4G39840 Arabidopsis thaliana HOM05D004657 ORTHO05D005562 1.1e-99 367.9 261 72.8
Phvul.002G255300 Phaseolus vulgaris HOM05D004657 ORTHO05D005562 1.8e-99 367.1 479 53.0
Carub.0007s0176 Capsella rubella HOM05D004657 ORTHO05D005562 3.1e-99 366.3 251 73.3
Cpa.g.sc621.1 Carica papaya HOM05D004657 ORTHO05D005562 3.1e-99 366.3 243 76.5
Sp7g36050 Schrenkiella parvula HOM05D004657 ORTHO05D005562 3.1e-99 366.3 251 73.7
QL06p049779 Quercus lobata HOM05D004657 ORTHO05D005562 4.0e-99 365.9 280 71.4
AL7G12070 Arabidopsis lyrata HOM05D004657 ORTHO05D005562 5.3e-99 365.5 254 73.2
TAR625G0843 Trochodendron aralioides HOM05D004657 ORTHO05D005562 5.3e-99 365.5 427 53.2
CiPaw.03G141100 Carya illinoinensis HOM05D004657 ORTHO05D005562 6.9e-99 365.2 460 53.7
arahy.Tifrunner.gnm1.ann1.4BU7T8 Arachis hypogaea HOM05D004657 ORTHO05D005562 1.2e-98 364.4 525 48.4
CiPaw.04G098700 Carya illinoinensis HOM05D004657 ORTHO05D005562 1.2e-98 364.4 426 55.4
Thecc.01G102700 Theobroma cacao HOM05D004657 ORTHO05D005562 5.8e-98 362.1 485 52.4
Glyma.08G136600 Glycine max HOM05D004657 ORTHO05D005562 9.9e-98 361.3 447 51.9
Lalb_Chr07g0185151 Lupinus albus HOM05D004657 ORTHO05D005562 9.9e-98 361.3 357 62.5
Phvul.001G251700 Phaseolus vulgaris HOM05D004657 ORTHO05D005562 1.7e-97 360.5 435 55.6
Gohir.D03G036900 Gossypium hirsutum HOM05D004657 ORTHO05D005562 2.9e-97 359.8 449 55.9
PGR004G1209 Punica granatum HOM05D004657 ORTHO05D005562 6.4e-97 358.6 484 53.3
Gohir.A02G143600 Gossypium hirsutum HOM05D004657 ORTHO05D005562 8.4e-97 358.2 449 55.7
CANSAT01G2418 Cannabis sativa HOM05D004657 ORTHO05D005562 1.1e-96 357.8 472 51.1
Gorai.003G038700 Gossypium raimondii HOM05D004657 ORTHO05D005562 2.4e-96 356.7 449 55.5
Medtr8g090265 Medicago truncatula HOM05D004657 ORTHO05D005562 2.4e-96 356.7 484 53.5
BcaNung05325 Brassica carinata HOM05D004657 ORTHO05D005562 3.2e-96 356.3 252 72.6
ClCG01G018830 Citrullus lanatus HOM05D004657 ORTHO05D005562 3.2e-96 356.3 434 54.6
MD15G1325300 Malus domestica HOM05D004657 ORTHO05D005562 3.2e-96 356.3 462 53.5
C01p00860 Brassica napus HOM05D004657 ORTHO05D005562 5.4e-96 355.5 446 56.5
C03p78370 Brassica napus HOM05D004657 ORTHO05D005562 5.4e-96 355.5 358 64.0
CARHR246860 Cardamine hirsuta HOM05D004657 ORTHO05D005562 1.6e-95 354.0 457 55.1
arahy.Tifrunner.gnm1.ann1.Q2VPH2 Arachis hypogaea HOM05D004657 ORTHO05D005562 2.1e-95 353.6 516 48.8
A08p23310 Brassica napus HOM05D004657 ORTHO05D005562 2.1e-95 353.6 251 72.1
BraA08t34286Z Brassica rapa HOM05D004657 ORTHO05D005562 2.1e-95 353.6 251 72.1
Eucgr.I00428 Eucalyptus grandis HOM05D004657 ORTHO05D005562 2.1e-95 353.6 469 50.3
Hma1.2p1_0047F.1_g027890 Hydrangea macrophylla HOM05D004657 ORTHO05D005562 3.5e-95 352.8 464 54.1
Ciclev10027598m.g Citrus clementina HOM05D004657 ORTHO05D005562 4.6e-95 352.4 238 74.8
Haze_24945 Corylus avellana HOM05D004657 ORTHO05D005562 4.6e-95 352.4 471 51.0
Lj2P550T25 Lonicera japonica HOM05D004657 ORTHO05D005562 6.0e-95 352.1 423 58.2
BcaNung00905 Brassica carinata HOM05D004657 ORTHO05D005562 7.9e-95 351.7 446 55.4
THA.LOC104807698 Tarenaya hassleriana HOM05D004657 ORTHO05D005562 1.0e-94 351.3 248 71.8
Duzib147G0720 Durio zibethinus HOM05D004657 ORTHO05D005562 1.3e-94 350.9 473 50.3
A01p00750 Brassica napus HOM05D004657 ORTHO05D005562 3.0e-94 349.7 461 55.5
Sabra07G0075500 Salix brachista HOM05D004657 ORTHO05D005562 3.0e-94 349.7 447 51.9
BraA01t00078Z Brassica rapa HOM05D004657 ORTHO05D005562 5.1e-94 349.0 461 55.1
TAR381G0611 Trochodendron aralioides HOM05D004657 ORTHO05D005562 8.7e-94 348.2 303 62.0
Sed0024330 Sechium edule HOM05D004657 ORTHO05D005562 1.1e-93 347.8 415 55.9
BolC1t00087H Brassica oleracea HOM05D004657 ORTHO05D005562 1.9e-93 347.1 461 54.0
Gohir.D11G222100 Gossypium hirsutum HOM05D004657 ORTHO05D005562 1.9e-93 347.1 437 54.0
Sc16g0005630 Simmondsia chinensis HOM05D004657 ORTHO05D005562 5.6e-93 345.5 244 70.1
Gohir.A11G200900 Gossypium hirsutum HOM05D004657 ORTHO05D005562 1.3e-92 344.4 430 52.3
MELO3C007762.2 Cucumis melo HOM05D004657 ORTHO05D005562 2.8e-92 343.2 436 54.4
BolC3t20095H Brassica oleracea HOM05D004657 ORTHO05D005562 3.6e-92 342.8 451 55.0
CSS0006663 Camellia sinensis var. sinensis HOM05D004657 ORTHO05D005562 3.6e-92 342.8 455 56.0
Gorai.007G239400 Gossypium raimondii HOM05D004657 ORTHO05D005562 1.4e-91 340.9 442 53.8
Manes.12G135900 Manihot esculenta HOM05D004657 ORTHO05D005562 2.4e-91 340.1 456 52.2
THA.LOC104824872 Tarenaya hassleriana HOM05D004657 ORTHO05D005562 2.4e-91 340.1 431 52.9
DCAR_014230 Daucus carota HOM05D004657 ORTHO05D005562 5.3e-91 339.0 436 53.0
Potri.005G076500 Populus trichocarpa HOM05D004657 ORTHO05D005562 9.0e-91 338.2 483 48.7
Duzib264G0234 Durio zibethinus HOM05D004657 ORTHO05D005562 1.2e-90 337.8 478 50.6
TWI53G1309 Tripterygium wilfordii HOM05D004657 ORTHO05D005562 2.0e-90 337.0 345 57.7
Potri.007G091900 Populus trichocarpa HOM05D004657 ORTHO05D005562 4.5e-90 335.9 457 52.1
Rhsim10G0161200 Rhododendron simsii HOM05D004657 ORTHO05D005562 1.3e-89 334.3 372 55.6
Atru.chr4.84 Acer truncatum HOM05D004657 ORTHO05D005562 2.9e-89 333.2 473 51.2
Aqoxy6G00812 Aquilegia oxysepala HOM05D004657 ORTHO05D005562 2.9e-89 333.2 422 50.2
CsaV3_6G045490 Cucumis sativus L. HOM05D004657 ORTHO05D005562 8.4e-89 331.6 438 53.2
MSTRG.3785 Avicennia marina HOM05D004657 ORTHO05D005562 1.1e-88 331.3 357 57.4
Manes.13G075300 Manihot esculenta HOM05D004657 ORTHO05D005562 2.4e-88 330.1 448 51.6
Cc00_g16220 Coffea canephora HOM05D004657 ORTHO05D005562 2.1e-87 327.0 356 57.6
Sabra05G0063000 Salix brachista HOM05D004657 ORTHO05D005562 2.1e-87 327.0 464 48.7
TWI77G0153 Tripterygium wilfordii HOM05D004657 ORTHO05D005562 3.5e-87 326.2 434 51.2
PGSC0003DMG400001895 Solanum tuberosum HOM05D004657 ORTHO05D005562 1.3e-86 324.3 267 65.2
TPR.G6250 Trifolium pratense HOM05D004657 ORTHO05D005562 1.8e-86 323.9 484 47.9
Lj4g0017498 Lotus japonicus HOM05D004657 ORTHO05D005562 3.0e-86 323.2 461 52.7
PSO781G0272 Papaver somniferum HOM05D004657 ORTHO05D005562 6.7e-86 322.0 275 62.5
Psat7g054320 Pisum sativum HOM05D004657 ORTHO05D005562 2.5e-85 320.1 483 51.8
Lsat_1_v5_gn_4_142741 Lactuca sativa HOM05D004657 ORTHO05D005562 3.3e-85 319.7 478 49.8
Migut.L00115 Erythranthe guttata HOM05D004657 ORTHO05D005562 7.4e-85 318.5 368 56.5
Peaxi162Scf00805g00021 Petunia axillaris HOM05D004657 ORTHO05D005562 9.6e-85 318.2 374 59.9
Nitab4.5_0000004g0340 Nicotiana tabacum HOM05D004657 ORTHO05D005562 2.1e-84 317.0 267 62.5
Sopen03g021540 Solanum pennellii HOM05D004657 ORTHO05D005562 3.7e-84 316.2 252 66.7
Solyc03g078640.1 Solanum lycopersicum HOM05D004657 ORTHO05D005562 6.2e-84 315.5 252 66.3
Glyma.05G179100 Glycine max HOM05D004657 ORTHO05D005562 1.4e-83 314.3 233 68.7
HanXRQChr17g0543271 Helianthus annuus HOM05D004657 ORTHO05D005562 1.4e-83 314.3 453 49.9
PGSC0003DMG400023187 Solanum tuberosum HOM05D004657 ORTHO05D005562 1.4e-83 314.3 260 63.5
Solyc04g055090.1 Solanum lycopersicum HOM05D004657 ORTHO05D005562 2.4e-83 313.5 367 52.3
Sopen04g024940 Solanum pennellii HOM05D004657 ORTHO05D005562 4.0e-83 312.8 369 52.6
PSO541G4803 Papaver somniferum HOM05D004657 ORTHO05D005562 3.4e-82 309.7 435 53.3
Nitab4.5_0000897g0030 Nicotiana tabacum HOM05D004657 ORTHO05D005562 1.0e-81 308.1 256 62.5
Lsat_1_v5_gn_5_43821 Lactuca sativa HOM05D004657 ORTHO05D005562 1.3e-81 307.8 441 48.3
SGA_v2.0_scaffold34G13594 Striga asiatica HOM05D004657 ORTHO05D005562 2.2e-81 307.0 420 45.5
CAN.G480.1 Capsicum annuum HOM05D004657 ORTHO05D005562 4.2e-80 302.8 386 52.6
unitig_748.g8654 Utricularia gibba HOM05D004657 ORTHO05D005562 3.5e-79 299.7 416 46.2
unitig_32.g11813 Utricularia gibba HOM05D004657 ORTHO05D005562 1.9e-77 293.9 378 48.7
SGA_v2.0_scaffold47G17783 Striga asiatica HOM05D004657 ORTHO05D005562 2.5e-77 293.5 419 46.1
MBI02_g08733_MAGBIO Magnolia biondii HOM05D004657 ORTHO05D005562 5.7e-77 292.4 445 44.0
MSTRG.23340 Avicennia marina HOM05D004657 ORTHO05D005562 1.1e-75 288.1 465 46.9
DCAR_011511 Daucus carota HOM05D004657 ORTHO05D005562 2.6e-74 283.5 407 50.1
MSTRG.2565 Avicennia marina HOM05D004657 ORTHO05D005562 1.3e-73 281.2 451 48.8
SalBow3G2946 Salvia bowleyana HOM05D004657 ORTHO05D005562 2.5e-72 276.9 213 66.2
DCAR_001485 Daucus carota HOM05D004657 ORTHO05D005562 3.9e-70 269.6 341 48.1
unitig_88.g27724 Utricularia gibba HOM05D004657 ORTHO05D005562 7.4e-69 265.4 221 60.2
SHI11535 Sapria himalayana HOM05D004657 ORTHO05D000023 2.8e-60 236.9 258 47.7
HPP92_016347 Vanilla planifolia HOM05D004657 ORTHO05D008789 4.4e-53 213.0 273 46.2
SEGI_28024 Sequoiadendron giganteum HOM05D004657 ORTHO05D005562 1.8e-43 181.0 263 37.3
ATR0564G070 Amborella trichopoda HOM05D004657 ORTHO05D005562 7.0e-43 179.1 229 42.8
Os08g0411300 Oryza sativa ssp. japonica HOM05D004657 ORTHO05D005562 3.5e-42 176.8 245 42.0
Zm00001eb001010 Zea mays HOM05D004657 ORTHO05D005562 5.9e-42 176.0 244 41.8
Actinidia36592 Actinidia chinensis HOM05D004657 ORTHO05D005562 1.0e-41 175.3 112 76.8
TPR.G17843 Trifolium pratense HOM05D004657 ORTHO05D005562 2.1e-39 167.5 89 88.8
Nitab4.5_0000104g0160 Nicotiana tabacum HOM05D004657 ORTHO05D005562 4.4e-37 159.8 338 41.4
Mapoly0036s0106 Marchantia polymorpha HOM05D004657 ORTHO05D005562 2.8e-36 157.1 247 36.8
SMO012G0039 Selaginella moellendorffii HOM05D004657 ORTHO05D005562 5.0e-33 146.4 235 37.9
AagrBONN_evm.TU.Sc2ySwM_368.2671 Anthoceros agrestis HOM05D004657 ORTHO05D005562 7.2e-32 142.5 243 36.2
CDE12G0473 Ceratophyllum demersum HOM05D001805 ORTHO05D001734 4.1e-27 126.7 190 38.9
Pp3c24_14210 Physcomitrium patens HOM05D004657 ORTHO05D005562 9.2e-27 125.6 256 31.6
Pp3c8_17900 Physcomitrium patens HOM05D004657 ORTHO05D005562 1.6e-26 124.8 218 33.0
MD01G1028100 Malus domestica HOM05D004657 ORTHO05D005562 1.0e-25 122.1 285 43.5
Zm00001eb119110 Zea mays HOM05D004657 ORTHO05D005562 5.0e-25 119.8 227 35.2
CBR_g45841 Chara braunii HOM05D004657 ORTHO05D005562 8.9e-22 109.0 225 28.9
Zm00001eb272140 Zea mays HOM05D004657 ORTHO05D005562 8.9e-22 109.0 160 41.2
CBR_g57642 Chara braunii HOM05D004657 ORTHO05D005562 1.1e-19 102.1 214 27.6
Zm00001eb168110 Zea mays HOM05D004657 ORTHO05D005562 7.0e-19 99.4 220 33.2
Oeu054841.2 Olea europaea HOM05D004657 ORTHO05D005562 1.6e-18 98.2 268 42.9
Zm00001eb295260 Zea mays HOM05D004657 ORTHO05D005562 5.8e-13 79.7 119 42.9
Zm00001eb030060 Zea mays HOM05D004657 ORTHO05D005562 1.4e-11 75.1 105 42.9
Zm00001eb342160 Zea mays HOM05D004657 ORTHO05D005562 3.2e-11 73.9 162 34.0
Zm00001eb024090 Zea mays HOM05D004657 ORTHO05D005562 7.0e-11 72.8 110 39.1
Zm00001eb008600 Zea mays HOM05D004657 ORTHO05D005562 1.7e-09 68.2 211 27.5
Oeu002176.1 Olea europaea HOM05D004657 ORTHO05D005562 3.9e-09 67.0 42 59.5
Zm00001eb210920 Zea mays HOM05D004657 ORTHO05D005562 3.9e-09 67.0 177 28.8
CDE04G1361 Ceratophyllum demersum HOM05D001805 ORTHO05D001734 4.3e-08 63.5 98 39.8
Sed0008262 Sechium edule HOM05D004657 ORTHO05D005562 7.3e-08 62.8 141 36.9
Zm00001eb332070 Zea mays HOM05D004657 ORTHO05D005562 8.1e-07 59.3 54 40.7


User provided reference genes

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