Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g088280 Pisum sativum HOM05D000556 ORTHO05D000404 8.3e-42 173.3 90 100.0
Psat2g133120 Pisum sativum HOM05D000556 ORTHO05D000404 3.9e-31 137.9 74 97.3
Psat2g129240 Pisum sativum HOM05D000556 ORTHO05D000404 8.1e-29 130.2 74 90.5
Medtr5g044580 Medicago truncatula HOM05D000556 ORTHO05D000404 4.4e-27 124.4 74 87.8
Medtr7g010890 Medicago truncatula HOM05D000556 ORTHO05D000404 8.3e-26 120.2 74 83.8
arahy.Tifrunner.gnm1.ann1.ZACS4K Arachis hypogaea HOM05D000556 ORTHO05D000404 1.1e-17 93.2 79 67.1
Lj1g0014737 Lotus japonicus HOM05D000556 ORTHO05D000404 9.2e-17 90.1 80 65.0
Lj1g0009197 Lotus japonicus HOM05D000556 ORTHO05D000404 6.0e-16 87.4 80 63.8
Thecc.04G082900 Theobroma cacao HOM05D000556 ORTHO05D000404 6.0e-16 87.4 74 64.9
Glyma.18G098300 Glycine max HOM05D000556 ORTHO05D000404 7.8e-16 87.0 76 67.1
Duzib264G1311 Durio zibethinus HOM05D000556 ORTHO05D000404 1.7e-15 85.9 74 63.5
Glyma.18G097400 Glycine max HOM05D000556 ORTHO05D000404 1.7e-15 85.9 98 56.1
Gorai.007G079000 Gossypium raimondii HOM05D000556 ORTHO05D000404 2.3e-15 85.5 75 62.7
Lalb_Chr10g0102861 Lupinus albus HOM05D000556 ORTHO05D000404 2.3e-15 85.5 95 52.6
vmacro05689 Vaccinium macrocarpon HOM05D000556 ORTHO05D000404 2.3e-15 85.5 98 54.1
Phvul.008G036500 Phaseolus vulgaris HOM05D000556 ORTHO05D000404 3.0e-15 85.1 95 52.6
Atru.chr8.173 Acer truncatum HOM05D000556 ORTHO05D000404 8.7e-15 83.6 81 63.0
Gohir.A11G069600 Gossypium hirsutum HOM05D000556 ORTHO05D000404 1.1e-14 83.2 75 61.3
Lalb_Chr24g0396081 Lupinus albus HOM05D000556 ORTHO05D000404 1.1e-14 83.2 74 63.5
Gohir.D11G073600 Gossypium hirsutum HOM05D000556 ORTHO05D000404 1.9e-14 82.4 75 61.3
Phvul.008G040400 Phaseolus vulgaris HOM05D000556 ORTHO05D000404 1.9e-14 82.4 95 51.6
Duzib147G0631 Durio zibethinus HOM05D000556 ORTHO05D000404 3.3e-14 81.6 74 60.8
VMungo1383G3380 Vigna mungo HOM05D000556 ORTHO05D000404 3.3e-14 81.6 95 53.7
COL.COLO4_04930 Corchorus olitorius HOM05D000556 ORTHO05D000404 4.3e-14 81.3 74 63.5
Ciclev10013797m.g Citrus clementina HOM05D000556 ORTHO05D000404 1.2e-13 79.7 78 60.3
CiPaw.05G134300 Carya illinoinensis HOM05D000556 ORTHO05D000404 2.1e-13 79.0 95 52.6
TPR.G24458 Trifolium pratense HOM05D000556 ORTHO05D000404 2.1e-13 79.0 46 89.1
Manes.05G102200 Manihot esculenta HOM05D000556 ORTHO05D000404 1.1e-12 76.6 74 56.8
PSO478G1277 Papaver somniferum HOM05D000556 ORTHO05D000404 1.1e-12 76.6 82 57.3
TAR622G0200 Trochodendron aralioides HOM05D000556 ORTHO05D000404 1.1e-12 76.6 74 59.5
Rhsim10G0037800 Rhododendron simsii HOM05D000556 ORTHO05D000404 3.1e-12 75.1 96 47.9
Hma1.2p1_0795F.1_g218910 Hydrangea macrophylla HOM05D000556 ORTHO05D000404 5.3e-12 74.3 80 58.8
CANSAT56G3390 Cannabis sativa HOM05D000556 ORTHO05D000404 1.2e-11 73.2 76 56.6
Eucgr.B03216 Eucalyptus grandis HOM05D000556 ORTHO05D000404 1.2e-11 73.2 86 48.8
unitig_747.g21177 Utricularia gibba HOM05D004646 ORTHO05D005829 2.0e-11 72.4 99 48.5
CiPaw.06G086000 Carya illinoinensis HOM05D000556 ORTHO05D000404 2.6e-11 72.0 70 58.6
Peaxi162Scf00222g00524 Petunia axillaris HOM05D000556 ORTHO05D000404 2.6e-11 72.0 82 57.3
QL03p068736 Quercus lobata HOM05D000556 ORTHO05D000404 2.6e-11 72.0 74 55.4
Cfa008973 Carpinus fangiana HOM05D000556 ORTHO05D000404 3.4e-11 71.6 74 54.1
THA.LOC104805470 Tarenaya hassleriana HOM05D000556 ORTHO05D000404 3.4e-11 71.6 78 53.8
THA.LOC109116002 Tarenaya hassleriana HOM05D000556 ORTHO05D000404 3.4e-11 71.6 78 53.8
ClCG06G012170 Citrullus lanatus HOM05D000556 ORTHO05D000404 4.4e-11 71.2 71 59.2
Peaxi162Scf00222g00423 Petunia axillaris HOM05D000556 ORTHO05D000404 4.4e-11 71.2 82 56.1
Potri.010G168400 Populus trichocarpa HOM05D000556 ORTHO05D000404 4.4e-11 71.2 91 48.4
PGR102G2524 Punica granatum HOM05D000556 ORTHO05D000404 4.4e-11 71.2 88 51.1
Actinidia38765 Actinidia chinensis HOM05D000556 ORTHO05D002067 5.8e-11 70.9 74 55.4
Ah.08g214530 Amaranthus hybridus HOM05D000556 ORTHO05D000404 7.6e-11 70.5 85 52.9
AUR62032793 Chenopodium quinoa HOM05D000556 ORTHO05D000404 7.6e-11 70.5 85 52.9
Nn8g39710 Nelumbo nucifera HOM05D000556 ORTHO05D000404 7.6e-11 70.5 74 59.5
SHI25938 Sapria himalayana HOM05D000556 ORTHO05D000404 7.6e-11 70.5 76 55.3
Potri.008G087000 Populus trichocarpa HOM05D000556 ORTHO05D000404 9.9e-11 70.1 91 48.4
Sabra10G0128200 Salix brachista HOM05D000556 ORTHO05D000404 9.9e-11 70.1 92 47.8
TWI79G0839 Tripterygium wilfordii HOM05D000556 ORTHO05D000404 9.9e-11 70.1 83 53.0
Rhsim12G0112700 Rhododendron simsii HOM05D000556 ORTHO05D000404 1.3e-10 69.7 97 49.5
EL10Ac6g13217 Beta vulgaris HOM05D000556 ORTHO05D000404 1.7e-10 69.3 91 50.5
SHI20526 Sapria himalayana HOM05D000556 ORTHO05D000404 1.7e-10 69.3 76 53.9
MELO3C010247.2 Cucumis melo HOM05D000556 ORTHO05D000404 2.9e-10 68.6 71 52.1
Cpa.g.sc140.48 Carica papaya HOM05D000556 ORTHO05D000404 4.9e-10 67.8 79 48.1
DCAR_011093 Daucus carota HOM05D000556 ORTHO05D000404 4.9e-10 67.8 74 52.7
Nitab4.5_0001555g0020 Nicotiana tabacum HOM05D000556 ORTHO05D000404 4.9e-10 67.8 83 54.2
PGSC0003DMG400040190 Solanum tuberosum HOM05D000556 ORTHO05D000404 4.9e-10 67.8 86 54.7
CDE04G1733 Ceratophyllum demersum HOM05D000878 ORTHO05D000404 6.4e-10 67.4 69 60.9
Aa31LG9G16460 Aethionema arabicum HOM05D000556 ORTHO05D000404 8.4e-10 67.0 86 47.7
CSS0023643 Camellia sinensis var. sinensis HOM05D000556 ORTHO05D000404 8.4e-10 67.0 72 54.2
THA.LOC104823904 Tarenaya hassleriana HOM05D000556 ORTHO05D000404 8.4e-10 67.0 87 49.4
CDE08G1275 Ceratophyllum demersum HOM05D000878 ORTHO05D004971 1.4e-09 66.2 69 59.4
MBI16_g37880_MAGBIO Magnolia biondii HOM05D000556 ORTHO05D000404 1.4e-09 66.2 67 58.2
MD00G1130800 Malus domestica HOM05D000556 ORTHO05D000404 1.4e-09 66.2 92 46.7
Aqoxy3G03401 Aquilegia oxysepala HOM05D000556 ORTHO05D000404 1.9e-09 65.9 78 52.6
Thhalv10014525m.g Eutrema salsugineum HOM05D000556 ORTHO05D000404 1.9e-09 65.9 87 48.3
CSS0022765 Camellia sinensis var. sinensis HOM05D000556 ORTHO05D000404 2.4e-09 65.5 88 52.3
Lj6P787T23 Lonicera japonica HOM05D000556 ORTHO05D000404 2.4e-09 65.5 79 51.9
Actinidia31899 Actinidia chinensis HOM05D000556 ORTHO05D000404 3.2e-09 65.1 67 55.2
ECA246G5301 Erigeron canadensis HOM05D000556 ORTHO05D000404 4.2e-09 64.7 72 52.8
Prupe.3G266800 Prunus persica HOM05D000556 ORTHO05D000404 4.2e-09 64.7 92 50.0
AT5G39650 Arabidopsis thaliana HOM05D000556 ORTHO05D000404 7.1e-09 63.9 89 47.2
DCAR_027417 Daucus carota HOM05D000556 ORTHO05D000404 7.1e-09 63.9 72 55.6
Rhsim10G0038100 Rhododendron simsii HOM05D000556 ORTHO05D000404 7.1e-09 63.9 97 42.3
A04p12360 Brassica napus HOM05D000556 ORTHO05D000404 9.3e-09 63.5 90 47.8
BolC4t26189H Brassica oleracea HOM05D000556 ORTHO05D000404 9.3e-09 63.5 89 46.1
BraA04t16900Z Brassica rapa HOM05D000556 ORTHO05D000404 9.3e-09 63.5 90 47.8
MBI05_g34364_MAGBIO Magnolia biondii HOM05D000556 ORTHO05D000404 9.3e-09 63.5 67 58.2
CAN.G1604.5 Capsicum annuum HOM05D000556 ORTHO05D000404 1.2e-08 63.2 85 50.6
Zm00001eb372320 Zea mays HOM05D000556 ORTHO05D000404 1.2e-08 63.2 42 76.2
CARHR017530 Cardamine hirsuta HOM05D000556 ORTHO05D000404 1.6e-08 62.8 85 42.4
FvH4_6g48440 Fragaria vesca HOM05D000556 ORTHO05D000404 1.6e-08 62.8 100 46.0
FAN02G4339 Fragaria x ananassa HOM05D000556 ORTHO05D000404 1.6e-08 62.8 100 46.0
FAN14G3019 Fragaria x ananassa HOM05D000556 ORTHO05D000404 1.6e-08 62.8 100 46.0
BcaB06g27350 Brassica carinata HOM05D000556 ORTHO05D000404 2.7e-08 62.0 89 46.1
ECA233G2340 Erigeron canadensis HOM05D000556 ORTHO05D000404 2.7e-08 62.0 75 46.7
Nitab4.5_0000040g0260 Nicotiana tabacum HOM05D000556 ORTHO05D007135 2.7e-08 62.0 44 81.8
BcaB01g05567 Brassica carinata HOM05D000556 ORTHO05D000404 3.5e-08 61.6 86 46.5
BcaB01g05665 Brassica carinata HOM05D000556 ORTHO05D000404 3.5e-08 61.6 86 46.5
A03p04210 Brassica napus HOM05D000556 ORTHO05D000404 3.5e-08 61.6 86 46.5
BolC3t12998H Brassica oleracea HOM05D000556 ORTHO05D000404 3.5e-08 61.6 86 46.5
BraA03t09766Z Brassica rapa HOM05D000556 ORTHO05D000404 3.5e-08 61.6 86 46.5
Ciclev10033552m.g Citrus clementina HOM05D000556 ORTHO05D000404 3.5e-08 61.6 74 51.4
HanXRQChr17g0545261 Helianthus annuus HOM05D000556 ORTHO05D000404 3.5e-08 61.6 81 53.1
Sed0011965 Sechium edule HOM05D000556 ORTHO05D000404 3.5e-08 61.6 71 53.5
Lsat_1_v5_gn_8_52681 Lactuca sativa HOM05D000556 ORTHO05D000404 4.6e-08 61.2 79 53.2
Thhalv10027899m.g Eutrema salsugineum HOM05D000556 ORTHO05D000404 6.0e-08 60.8 89 44.9
FAN05G0046 Fragaria x ananassa HOM05D000556 ORTHO05D000404 1.0e-07 60.1 99 44.4
MD09G1051900 Malus domestica HOM05D000556 ORTHO05D000404 1.0e-07 60.1 92 47.8
RcHm_v2.0_Chr2g0168351 Rosa chinensis HOM05D000556 ORTHO05D000404 1.3e-07 59.7 101 42.6
Migut.L01282 Erythranthe guttata HOM05D000556 ORTHO05D000404 1.7e-07 59.3 72 52.8
PSO017G2144 Papaver somniferum HOM05D000556 ORTHO05D000404 3.0e-07 58.5 75 46.7
MELO3C023229.2 Cucumis melo HOM05D000556 ORTHO05D000404 3.9e-07 58.2 68 51.5
Cc10_g09210 Coffea canephora HOM05D000556 ORTHO05D000404 5.1e-07 57.8 72 50.0
Sp7g02360 Schrenkiella parvula HOM05D000556 ORTHO05D000404 5.1e-07 57.8 89 43.8
Dinv33767 Davidia involucrata HOM05D000556 ORTHO05D000404 6.6e-07 57.4 79 46.8
SGA_v2.0_scaffold196G40970 Striga asiatica HOM05D000556 ORTHO05D000404 6.6e-07 57.4 74 50.0
CARHR262660 Cardamine hirsuta HOM05D000556 ORTHO05D000404 1.1e-06 56.6 89 42.7
Rhsim10G0037600 Rhododendron simsii HOM05D000556 ORTHO05D000404 1.9e-06 55.8 70 48.6
CsaV3_1G028660 Cucumis sativus L. HOM05D000556 ORTHO05D000404 2.5e-06 55.5 89 41.6
ATR0564G065 Amborella trichopoda HOM05D000556 ORTHO05D000404 3.3e-06 55.1 62 53.2
AT1G09157 Arabidopsis thaliana HOM05D000556 ORTHO05D000404 4.3e-06 54.7 36 72.2
AL7G50660 Arabidopsis lyrata HOM05D000556 ORTHO05D000404 7.3e-06 53.9 89 41.6
Lsat_1_v5_gn_3_52100 Lactuca sativa HOM05D000556 ORTHO05D000404 9.6e-06 53.5 31 83.9


User provided reference genes

Program Settings