Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g087080 Pisum sativum HOM05D005772 ORTHO05D006468 7.3e-133 477.2 245 100.0
TPR.G21059 Trifolium pratense HOM05D005772 ORTHO05D006468 6.5e-97 357.8 252 75.8
Lj1g0001548 Lotus japonicus HOM05D005772 ORTHO05D006468 9.1e-83 310.8 250 68.8
Phvul.007G102200 Phaseolus vulgaris HOM05D005772 ORTHO05D006468 1.1e-80 303.9 253 66.0
VMungo1309G2764 Vigna mungo HOM05D005772 ORTHO05D006468 4.2e-80 302.0 250 65.6
Glyma.04G249200 Glycine max HOM05D005772 ORTHO05D006468 9.4e-80 300.8 251 65.3
Glyma.06G113802 Glycine max HOM05D005772 ORTHO05D006468 7.4e-77 291.2 285 58.9
Phvul.009G125600 Phaseolus vulgaris HOM05D005772 ORTHO05D006468 8.8e-70 267.7 191 68.6
arahy.Tifrunner.gnm1.ann1.AWF3QX Arachis hypogaea HOM05D005772 ORTHO05D006468 2.4e-67 259.6 242 59.9
Lalb_Chr08g0241421 Lupinus albus HOM05D005772 ORTHO05D006468 1.7e-65 253.4 250 60.8
arahy.Tifrunner.gnm1.ann1.B1JKF4 Arachis hypogaea HOM05D005772 ORTHO05D006468 1.0e-62 244.2 221 61.1
Thecc.08G129200 Theobroma cacao HOM05D005772 ORTHO05D006468 2.3e-54 216.5 245 52.7
QL09p033796 Quercus lobata HOM05D005772 ORTHO05D006468 2.6e-53 213.0 250 50.8
Duzib093G1216 Durio zibethinus HOM05D005772 ORTHO05D006468 1.8e-51 206.8 250 51.6
Actinidia15231 Actinidia chinensis HOM05D005772 ORTHO05D006468 7.0e-51 204.9 245 47.8
CiPaw.16G025800 Carya illinoinensis HOM05D005772 ORTHO05D006468 3.5e-50 202.6 249 47.8
Gohir.D05G239100 Gossypium hirsutum HOM05D005772 ORTHO05D006468 3.5e-50 202.6 235 50.2
TAR628G1655 Trochodendron aralioides HOM05D005772 ORTHO05D006468 2.9e-49 199.5 249 48.2
Gohir.A05G237000 Gossypium hirsutum HOM05D005772 ORTHO05D006468 1.1e-48 197.6 235 49.8
Gorai.009G247900 Gossypium raimondii HOM05D005772 ORTHO05D006468 1.1e-48 197.6 235 49.4
Ciclev10003748m.g Citrus clementina HOM05D005772 ORTHO05D006468 2.5e-48 196.4 250 49.2
Actinidia21305 Actinidia chinensis HOM05D005772 ORTHO05D006468 3.3e-48 196.1 248 48.0
Cpa.g.sc64.117 Carica papaya HOM05D005772 ORTHO05D006468 2.1e-47 193.4 239 49.8
Nn5g28367 Nelumbo nucifera HOM05D005772 ORTHO05D006468 2.3e-46 189.9 244 45.5
Potri.005G180400 Populus trichocarpa HOM05D005772 ORTHO05D006468 3.0e-46 189.5 245 47.3
SGA_v2.0_scaffold52G18944 Striga asiatica HOM05D005772 ORTHO05D006468 2.9e-44 183.0 253 43.9
CsaV3_4G028090 Cucumis sativus L. HOM05D005772 ORTHO05D006468 1.1e-43 181.0 202 50.0
MBI06_g44579_MAGBIO Magnolia biondii HOM05D005772 ORTHO05D006468 9.2e-43 177.9 249 45.8
CANSAT64G1440 Cannabis sativa HOM05D005772 ORTHO05D006468 2.0e-42 176.8 237 47.3
MELO3C010502.2 Cucumis melo HOM05D005772 ORTHO05D006468 2.7e-42 176.4 231 46.3
GSVIVG01008837001 Vitis vinifera HOM05D005772 ORTHO05D006468 3.5e-42 176.0 174 56.3
Hma1.2p1_0612F.1_g188830 Hydrangea macrophylla HOM05D005772 ORTHO05D006468 5.9e-42 175.3 240 45.4
Manes.02G166200 Manihot esculenta HOM05D005772 ORTHO05D006468 1.0e-41 174.5 245 42.4
Migut.C01111 Erythranthe guttata HOM05D005772 ORTHO05D006468 6.6e-41 171.8 250 43.6
Cc10_g12210 Coffea canephora HOM05D005772 ORTHO05D006468 1.2e-39 167.5 235 44.3
ClCG11G015880 Citrullus lanatus HOM05D005772 ORTHO05D006468 4.7e-39 165.6 217 45.2
Nitab4.5_0000111g0180 Nicotiana tabacum HOM05D005772 ORTHO05D006468 4.7e-39 165.6 240 42.1
DCAR_003562 Daucus carota HOM05D005772 ORTHO05D006468 1.8e-38 163.7 245 42.9
PGR042G3290 Punica granatum HOM05D005772 ORTHO05D006468 2.3e-38 163.3 245 43.3
Migut.E01717 Erythranthe guttata HOM05D005772 ORTHO05D006468 8.9e-38 161.4 241 43.2
Migut.E00857 Erythranthe guttata HOM05D005772 ORTHO05D006468 5.8e-37 158.7 241 43.2
CSS0028957 Camellia sinensis var. sinensis HOM05D005772 ORTHO05D006468 1.1e-35 154.5 212 47.6
MSTRG.1426 Avicennia marina HOM05D005772 ORTHO05D006468 1.0e-33 147.9 245 42.4
Dinv27285 Davidia involucrata HOM05D005772 ORTHO05D006468 8.6e-33 144.8 239 41.0
THA.LOC104800210 Tarenaya hassleriana HOM05D005772 ORTHO05D006468 3.3e-32 142.9 237 40.1
SGA_v2.0_scaffold52G18951 Striga asiatica HOM05D005772 ORTHO05D006468 2.1e-31 140.2 224 40.2
Aqoxy6G00258 Aquilegia oxysepala HOM05D005772 ORTHO05D006468 2.8e-31 139.8 209 44.0
Nitab4.5_0004208g0030 Nicotiana tabacum HOM05D005772 ORTHO05D006468 1.8e-30 137.1 242 38.0
Carub.0001s2117 Capsella rubella HOM05D005772 ORTHO05D006468 2.3e-30 136.7 248 37.9
AL1G34900 Arabidopsis lyrata HOM05D005772 ORTHO05D006468 8.9e-30 134.8 247 37.2
AT1G21722 Arabidopsis thaliana HOM05D005772 ORTHO05D006468 7.5e-29 131.7 238 37.0
Thhalv10008678m.g Eutrema salsugineum HOM05D005772 ORTHO05D006468 7.5e-29 131.7 244 35.7
CARHR022100 Cardamine hirsuta HOM05D005772 ORTHO05D006468 1.9e-27 127.1 238 34.0
Medtr3g088090 Medicago truncatula HOM05D005772 ORTHO05D006468 5.4e-27 125.6 115 67.8
BcaC05g26092 Brassica carinata HOM05D005772 ORTHO05D006468 9.2e-27 124.8 244 36.5
Atru.chr13.1514 Acer truncatum HOM05D005772 ORTHO05D006468 6.0e-26 122.1 186 43.5
Lj4A634T17 Lonicera japonica HOM05D005772 ORTHO05D006468 7.8e-26 121.7 209 40.7
Oeu009481.1 Olea europaea HOM05D005772 ORTHO05D006468 1.3e-25 120.9 243 38.3
Solyc11g017475.1 Solanum lycopersicum HOM05D005772 ORTHO05D006468 3.0e-25 119.8 250 36.4
QL06p046996 Quercus lobata HOM05D005772 ORTHO05D006468 5.1e-25 119.0 178 42.7
SGA_v2.0_scaffold24G10436 Striga asiatica HOM05D002121 ORTHO05D004000 1.1e-24 117.9 216 38.4
A07p14940 Brassica napus HOM05D005772 ORTHO05D006468 2.5e-24 116.7 240 35.4
Prupe.3G025100 Prunus persica HOM05D005772 ORTHO05D006468 9.5e-24 114.8 249 34.5
SalBow5G3743 Salvia bowleyana HOM05D005772 ORTHO05D006468 1.2e-23 114.4 244 36.5
A06p17810 Brassica napus HOM05D005772 ORTHO05D006468 2.1e-23 113.6 246 34.6
Cfa003428 Carpinus fangiana HOM05D005772 ORTHO05D006468 2.1e-23 113.6 145 44.1
GSVIVG01029533001 Vitis vinifera HOM05D005956 ORTHO05D007197 6.2e-23 112.1 124 47.6
Aa31LG7G5690 Aethionema arabicum HOM05D002121 ORTHO05D004000 1.8e-22 110.5 105 52.4
TAR625G1307 Trochodendron aralioides HOM05D005772 ORTHO05D006468 5.2e-22 109.0 183 39.9
MBI06_g27497_MAGBIO Magnolia biondii HOM05D005772 ORTHO05D006468 1.5e-21 107.5 141 45.4
SalBow5G0344 Salvia bowleyana HOM05D005772 ORTHO05D006468 1.5e-21 107.5 244 34.8
HPP92_009982 Vanilla planifolia HOM05D005772 ORTHO05D006468 2.0e-21 107.1 206 32.5
CSS0023973 Camellia sinensis var. sinensis HOM05D005772 ORTHO05D006468 2.6e-21 106.7 173 40.5
CiPaw.01G207400 Carya illinoinensis HOM05D005772 ORTHO05D006468 2.6e-21 106.7 183 39.9
Sabra07G0001200 Salix brachista HOM05D005772 ORTHO05D006468 2.6e-21 106.7 144 42.4
TWI18G0423 Tripterygium wilfordii HOM05D005772 ORTHO05D006468 2.6e-21 106.7 207 35.3
Aqoxy2G03016 Aquilegia oxysepala HOM05D005772 ORTHO05D006468 7.6e-21 105.1 244 32.4
PSO063G1689 Papaver somniferum HOM05D005772 ORTHO05D006468 1.7e-20 104.0 138 40.6
Potri.007G001400 Populus trichocarpa HOM05D005772 ORTHO05D006468 1.7e-20 104.0 199 36.7
FAN02G1413 Fragaria x ananassa HOM05D005772 ORTHO05D006468 3.8e-20 102.8 246 33.3
Ciclev10013938m.g Citrus clementina HOM05D005772 ORTHO05D006468 4.9e-20 102.4 166 39.2
Ciclev10013939m.g Citrus clementina HOM05D005772 ORTHO05D006468 4.9e-20 102.4 166 39.2
Ciclev10013941m.g Citrus clementina HOM05D005772 ORTHO05D006468 6.4e-20 102.1 166 39.2
PSO170G5960 Papaver somniferum HOM05D005772 ORTHO05D006468 6.4e-20 102.1 248 32.3
Potri.007G001650 Populus trichocarpa HOM05D005772 ORTHO05D006468 6.4e-20 102.1 121 44.6
CiPaw.02G128300 Carya illinoinensis HOM05D005772 ORTHO05D006468 8.4e-20 101.7 181 38.1
FAN09G4514 Fragaria x ananassa HOM05D005772 ORTHO05D006468 8.4e-20 101.7 246 32.9
Rhsim08G0251400 Rhododendron simsii HOM05D000927 ORTHO05D000850 1.4e-19 100.9 145 40.0
RcHm_v2.0_Chr2g0149081 Rosa chinensis HOM05D005772 ORTHO05D006468 1.4e-19 100.9 246 32.5
Lj3g0026748 Lotus japonicus HOM05D005772 ORTHO05D006468 1.9e-19 100.5 174 37.9
MD04G1024200 Malus domestica HOM05D005772 ORTHO05D006468 2.4e-19 100.1 252 32.1
PGR031G3661 Punica granatum HOM05D005772 ORTHO05D006468 3.2e-19 99.8 245 33.9
CSS0004874 Camellia sinensis var. sinensis HOM05D005772 ORTHO05D006468 5.4e-19 99.0 185 38.9
VMungo1309G3162 Vigna mungo HOM05D005772 ORTHO05D006468 9.2e-19 98.2 249 36.9
Thecc.06G054300 Theobroma cacao HOM05D005772 ORTHO05D006468 1.2e-18 97.8 126 41.3
Nn8g41076 Nelumbo nucifera HOM05D005772 ORTHO05D006468 2.1e-18 97.1 165 37.0
CANSAT01G3073 Cannabis sativa HOM05D005772 ORTHO05D006468 4.6e-18 95.9 118 41.5
FAN14G5951 Fragaria x ananassa HOM05D005772 ORTHO05D006468 4.6e-18 95.9 246 32.5
vmacro10401 Vaccinium macrocarpon HOM05D005772 ORTHO05D006468 1.3e-17 94.4 209 33.0
SalBow8G0153 Salvia bowleyana HOM05D005772 ORTHO05D006468 2.5e-16 90.1 246 32.9
Oeu038376.1 Olea europaea HOM05D005772 ORTHO05D006468 7.3e-16 88.6 181 34.3
Sabra05G0136400 Salix brachista HOM05D005772 ORTHO05D006468 7.3e-16 88.6 179 40.2
unitig_22.g6227 Utricularia gibba HOM05D005772 ORTHO05D006468 2.8e-15 86.7 65 58.5
Haze_17513 Corylus avellana HOM05D000187 ORTHO05D000926 6.2e-15 85.5 218 30.3
Rhsim06G0101700 Rhododendron simsii HOM05D005772 ORTHO05D006468 1.1e-14 84.7 178 36.5
BcaB07g32170 Brassica carinata HOM05D005772 ORTHO05D006468 2.4e-14 83.6 214 30.8
Medtr0032s0080 Medicago truncatula HOM05D005772 ORTHO05D006468 3.1e-14 83.2 199 30.7
AT1G78922 Arabidopsis thaliana HOM05D005772 ORTHO05D006468 6.9e-14 82.0 152 32.9
Lsat_1_v5_gn_8_150021 Lactuca sativa HOM05D041600 ORTHO05D006468 1.2e-13 81.3 175 35.4
CARHR072530 Cardamine hirsuta HOM05D005772 ORTHO05D006468 1.5e-13 80.9 209 31.6
Sed0012770 Sechium edule HOM05D005772 ORTHO05D006468 1.5e-13 80.9 190 33.2
SGA_v2.0_scaffold2751G54198 Striga asiatica HOM05D005772 ORTHO05D006468 4.4e-13 79.3 132 39.4
Manes.14G007000 Manihot esculenta HOM05D005772 ORTHO05D006468 7.6e-13 78.6 176 31.8
Carub.0002s2577 Capsella rubella HOM05D005772 ORTHO05D006468 9.9e-13 78.2 121 35.5
Zm00001eb215960 Zea mays HOM05D046982 ORTHO05D006468 1.3e-12 77.8 206 29.6
AL2G39360 Arabidopsis lyrata HOM05D005772 ORTHO05D006468 1.7e-12 77.4 104 38.5
BcaC08g45402 Brassica carinata HOM05D007236 ORTHO05D009150 1.9e-11 73.9 126 35.7
C06p30330 Brassica napus HOM05D005772 ORTHO05D006468 1.9e-11 73.9 126 35.7
BolC6t38196H Brassica oleracea HOM05D005772 ORTHO05D006468 1.9e-11 73.9 126 35.7
BraA07t30382Z Brassica rapa HOM05D005772 ORTHO05D006468 1.9e-11 73.9 154 31.8
Nitab4.5_0003012g0080 Nicotiana tabacum HOM05D005772 ORTHO05D006468 2.4e-11 73.6 50 64.0
BcaB02g07187 Brassica carinata HOM05D005772 ORTHO05D006468 3.2e-11 73.2 152 33.6
Aa31LG4G2060 Aethionema arabicum HOM05D005772 ORTHO05D006468 4.2e-11 72.8 209 29.2
C05p20700 Brassica napus HOM05D005772 ORTHO05D006468 7.1e-11 72.0 215 30.2
A07p27410 Brassica napus HOM05D005772 ORTHO05D006468 4.6e-10 69.3 208 28.8
Solyc11g018470.3 Solanum lycopersicum HOM05D005772 ORTHO05D006468 1.9e-08 63.9 192 29.7
THA.LOC104813627 Tarenaya hassleriana HOM05D005772 ORTHO05D006468 2.5e-08 63.5 276 27.9
Sp5g33960 Schrenkiella parvula HOM05D005772 ORTHO05D006468 5.6e-08 62.4 188 31.4
TPR.G38724 Trifolium pratense HOM05D003324 ORTHO05D006468 1.6e-07 60.8 171 33.3
SHI31127 Sapria himalayana HOM05D005772 ORTHO05D006468 3.6e-07 59.7 255 27.1


User provided reference genes

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