Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g072040 Pisum sativum HOM05D003457 ORTHO05D009249 4.8e-120 434.5 216 100.0
Medtr3g092670 Medicago truncatula HOM05D003457 ORTHO05D009249 2.0e-81 306.2 217 71.9
Ca_16777_v3 Cicer arietinum L. HOM05D003457 ORTHO05D009249 1.0e-77 293.9 219 69.4
TPR.G33664 Trifolium pratense HOM05D003457 ORTHO05D009249 1.3e-72 276.9 211 68.7
Lj1g0002342 Lotus japonicus HOM05D003457 ORTHO05D009249 1.5e-60 236.9 236 57.2
VMungo1309G3135 Vigna mungo HOM05D003457 ORTHO05D009249 8.1e-59 231.1 224 58.0
Glyma.04G228600 Glycine max HOM05D003457 ORTHO05D009249 2.6e-57 226.1 232 55.2
Phvul.009G045300 Phaseolus vulgaris HOM05D003457 ORTHO05D009249 9.8e-57 224.2 225 57.3
Glyma.06G136400 Glycine max HOM05D003457 ORTHO05D009249 1.1e-55 220.7 233 54.5
Lalb_Chr08g0239631 Lupinus albus HOM05D003457 ORTHO05D009249 3.5e-30 136.0 218 44.0
Gohir.D04G000050 Gossypium hirsutum HOM05D003457 ORTHO05D009249 3.0e-29 132.9 255 36.5
FAN03G1743 Fragaria x ananassa HOM05D003457 ORTHO05D009746 1.1e-28 131.0 203 43.3
FAN01G1561 Fragaria x ananassa HOM05D003457 ORTHO05D009746 7.4e-28 128.3 203 42.4
FAN10G0211 Fragaria x ananassa HOM05D003457 ORTHO05D009746 9.6e-28 127.9 203 42.4
Gohir.D04G000080 Gossypium hirsutum HOM05D003457 ORTHO05D009249 1.3e-27 127.5 258 35.7
Gorai.012G000700 Gossypium raimondii HOM05D003457 ORTHO05D009249 1.3e-27 127.5 258 35.7
FvH4_7g32890 Fragaria vesca HOM05D003457 ORTHO05D009249 2.1e-27 126.7 203 42.9
PGR142G1344 Punica granatum HOM05D003457 ORTHO05D009249 3.6e-27 125.9 240 37.9
Thecc.03G208400 Theobroma cacao HOM05D003457 ORTHO05D009249 6.2e-27 125.2 243 37.0
FAN10G3191 Fragaria x ananassa HOM05D003457 ORTHO05D009746 4.0e-26 122.5 203 41.4
Rhsim03G0215300 Rhododendron simsii HOM05D003457 ORTHO05D009249 4.5e-25 119.0 224 36.6
Ciclev10020653m.g Citrus clementina HOM05D003457 ORTHO05D009249 2.2e-24 116.7 221 36.2
Dinv29212 Davidia involucrata HOM05D003457 ORTHO05D009249 2.9e-24 116.3 276 31.2
Dinv35380 Davidia involucrata HOM05D003457 ORTHO05D009746 4.9e-24 115.5 274 32.5
RcHm_v2.0_Chr1g0382841 Rosa chinensis HOM05D003457 ORTHO05D009249 1.4e-23 114.0 220 37.3
ClCG00G005020 Citrullus lanatus HOM05D003457 ORTHO05D009249 2.4e-23 113.2 248 33.5
ClCG01G004590 Citrullus lanatus HOM05D003457 ORTHO05D009249 2.4e-23 113.2 248 33.5
ClCG01G004630 Citrullus lanatus HOM05D003457 ORTHO05D009249 2.4e-23 113.2 248 33.5
MELO3C033815.2 Cucumis melo HOM05D003457 ORTHO05D009249 3.2e-23 112.8 245 34.3
Duzib068G0780 Durio zibethinus HOM05D003457 ORTHO05D009249 4.2e-23 112.5 245 34.7
Duzib084G1096 Durio zibethinus HOM05D003457 ORTHO05D009249 7.1e-23 111.7 241 32.4
CsaV3_5G004840 Cucumis sativus L. HOM05D003457 ORTHO05D009249 9.3e-23 111.3 260 34.6
Prupe.2G318600 Prunus persica HOM05D003457 ORTHO05D009249 1.2e-22 110.9 250 34.0
Sc13g0010260 Simmondsia chinensis HOM05D003457 ORTHO05D009249 1.6e-22 110.5 230 35.7
Cpa.g.sc3.155 Carica papaya HOM05D003457 ORTHO05D009249 2.1e-22 110.2 264 33.0
Actinidia08697 Actinidia chinensis HOM05D003457 ORTHO05D009249 3.5e-22 109.4 231 34.2
Migut.F00990 Erythranthe guttata HOM05D003457 ORTHO05D009249 3.5e-22 109.4 224 36.2
Duzib205G0475 Durio zibethinus HOM05D003457 ORTHO05D009249 4.6e-22 109.0 242 34.3
Sopen03g022030 Solanum pennellii HOM05D003457 ORTHO05D009249 4.6e-22 109.0 247 35.2
Ah.07g204690 Amaranthus hybridus HOM05D003457 ORTHO05D009249 1.0e-21 107.8 213 38.5
Actinidia34268 Actinidia chinensis HOM05D003457 ORTHO05D009249 1.8e-21 107.1 229 34.5
MSTRG.31 Avicennia marina HOM05D003457 ORTHO05D009249 2.3e-21 106.7 220 35.5
MD07G1298800 Malus domestica HOM05D003457 ORTHO05D009249 2.3e-21 106.7 247 32.4
EL10Ac3g05182 Beta vulgaris HOM05D003457 ORTHO05D009249 3.0e-21 106.3 220 36.4
AUR62006007 Chenopodium quinoa HOM05D003457 ORTHO05D009746 6.7e-21 105.1 206 37.4
Manes.01G043100 Manihot esculenta HOM05D003457 ORTHO05D009249 8.7e-21 104.8 260 33.5
Cc02_g00840 Coffea canephora HOM05D003457 ORTHO05D009249 1.1e-20 104.4 245 34.7
MD01G1228100 Malus domestica HOM05D003457 ORTHO05D009249 1.1e-20 104.4 252 32.1
COL.COLO4_14368 Corchorus olitorius HOM05D003457 ORTHO05D009249 1.9e-20 103.6 179 37.4
TWI23G0841 Tripterygium wilfordii HOM05D003457 ORTHO05D009249 1.9e-20 103.6 229 35.4
CSS0022238 Camellia sinensis var. sinensis HOM05D003457 ORTHO05D009249 2.5e-20 103.2 241 34.9
CSS0029860 Camellia sinensis var. sinensis HOM05D003457 ORTHO05D009249 2.5e-20 103.2 241 34.9
SalBow2G2220 Salvia bowleyana HOM05D003457 ORTHO05D009249 7.4e-20 101.7 197 38.6
Eucgr.K00429 Eucalyptus grandis HOM05D003457 ORTHO05D009249 1.3e-19 100.9 269 30.9
Solyc03g081310.3 Solanum lycopersicum HOM05D003457 ORTHO05D009249 1.3e-19 100.9 247 35.6
AUR62035619 Chenopodium quinoa HOM05D003457 ORTHO05D009249 1.6e-19 100.5 233 36.1
Nitab4.5_0000319g0070 Nicotiana tabacum HOM05D003457 ORTHO05D009249 1.6e-19 100.5 242 35.1
Aqoxy5G04336 Aquilegia oxysepala HOM05D003457 ORTHO05D009249 3.7e-19 99.4 215 34.0
PGSC0003DMG400000588 Solanum tuberosum HOM05D003457 ORTHO05D009249 3.7e-19 99.4 245 33.9
TAR636G2436 Trochodendron aralioides HOM05D003457 ORTHO05D009249 3.7e-19 99.4 259 31.7
Sabra15G0003600 Salix brachista HOM05D003457 ORTHO05D009249 4.8e-19 99.0 260 32.7
MBI12_g09299_MAGBIO Magnolia biondii HOM05D003457 ORTHO05D009249 8.1e-19 98.2 246 31.7
Nn1g00443 Nelumbo nucifera HOM05D003457 ORTHO05D009249 8.1e-19 98.2 268 31.3
Oeu037975.2 Olea europaea HOM05D003457 ORTHO05D009249 1.1e-18 97.8 238 34.5
CARHR188920 Cardamine hirsuta HOM05D003457 ORTHO05D009249 3.1e-18 96.3 243 34.6
Nitab4.5_0005040g0050 Nicotiana tabacum HOM05D003457 ORTHO05D009249 3.1e-18 96.3 248 33.9
Potri.015G005100 Populus trichocarpa HOM05D003457 ORTHO05D009249 4.0e-18 95.9 263 31.6
Aa31LG11G3740 Aethionema arabicum HOM05D003457 ORTHO05D009249 5.3e-18 95.5 228 34.6
TAR629G1045 Trochodendron aralioides HOM05D003457 ORTHO05D009249 5.3e-18 95.5 290 29.7
Cfa016162 Carpinus fangiana HOM05D003457 ORTHO05D009249 9.0e-18 94.7 241 34.4
Thhalv10005511m.g Eutrema salsugineum HOM05D003457 ORTHO05D009249 1.2e-17 94.4 256 32.0
Lsat_1_v5_gn_7_20360 Lactuca sativa HOM05D003457 ORTHO05D009249 2.6e-17 93.2 195 34.9
AL6G36090 Arabidopsis lyrata HOM05D003457 ORTHO05D009249 5.8e-17 92.0 242 34.3
DCAR_020371 Daucus carota HOM05D003457 ORTHO05D009249 7.6e-17 91.7 202 33.2
Sp2g22840 Schrenkiella parvula HOM05D003457 ORTHO05D009249 7.6e-17 91.7 271 31.7
THA.LOC104798986 Tarenaya hassleriana HOM05D003457 ORTHO05D009249 1.0e-16 91.3 246 34.1
HPP92_015415 Vanilla planifolia HOM05D003457 ORTHO05D009249 1.0e-16 91.3 204 32.4
CAN.G303.15 Capsicum annuum HOM05D003457 ORTHO05D009249 1.3e-16 90.9 232 31.9
BcaB07g29912 Brassica carinata HOM05D003457 ORTHO05D009249 4.9e-16 89.0 206 35.4
Sabra05G0139600 Salix brachista HOM05D003457 ORTHO05D009249 4.9e-16 89.0 257 29.6
AT5G24500 Arabidopsis thaliana HOM05D003457 ORTHO05D009249 1.9e-15 87.0 242 33.1
SGA_v2.0_scaffold141G35555 Striga asiatica HOM05D003457 ORTHO05D009249 3.2e-15 86.3 201 33.8
Lsat_1_v5_gn_9_3980 Lactuca sativa HOM05D003457 ORTHO05D009249 4.2e-15 85.9 219 30.6
Lsat_1_v5_gn_5_51360 Lactuca sativa HOM05D003457 ORTHO05D009249 5.5e-15 85.5 219 30.6
Lsat_1_v5_gn_8_4361 Lactuca sativa HOM05D003457 ORTHO05D009249 5.5e-15 85.5 221 31.2
BcaC03g17967 Brassica carinata HOM05D003457 ORTHO05D009249 7.1e-15 85.1 196 35.7
HanXRQChr08g0225921 Helianthus annuus HOM05D003457 ORTHO05D009249 7.1e-15 85.1 249 31.3
C02p60250 Brassica napus HOM05D003457 ORTHO05D009249 1.2e-14 84.3 198 35.4
Lsat_1_v5_gn_1_120581 Lactuca sativa HOM05D003457 ORTHO05D009249 1.6e-14 84.0 221 30.3
Peaxi162Scf00300g00833 Petunia axillaris HOM05D003457 ORTHO05D009249 1.6e-14 84.0 232 35.3
Carub.0006s2232 Capsella rubella HOM05D003457 ORTHO05D009249 2.7e-14 83.2 247 32.8
BolC2t12082H Brassica oleracea HOM05D003457 ORTHO05D009249 7.9e-14 81.6 197 35.0
BraA02t08999Z Brassica rapa HOM05D003457 ORTHO05D009249 1.0e-13 81.3 201 32.8
A02p40300 Brassica napus HOM05D003457 ORTHO05D009249 1.3e-13 80.9 202 32.7
Potri.012G021300 Populus trichocarpa HOM05D003457 ORTHO05D009249 1.3e-13 80.9 283 27.6
Sabra12G0012300 Salix brachista HOM05D003457 ORTHO05D009249 8.7e-13 78.2 276 28.6
ATR1155G002 Amborella trichopoda HOM05D003457 ORTHO05D009249 1.5e-12 77.4 197 31.5
Atru.chr12.2426 Acer truncatum HOM05D003457 ORTHO05D009249 2.5e-12 76.6 132 39.4
CiPaw.06G041400 Carya illinoinensis HOM05D003457 ORTHO05D009249 5.7e-12 75.5 274 28.5
CiPaw.02G048700 Carya illinoinensis HOM05D003457 ORTHO05D009249 7.4e-12 75.1 132 41.7
PSO782G2427 Papaver somniferum HOM05D003457 ORTHO05D009249 1.2e-09 67.8 228 27.2
QL09p007211 Quercus lobata HOM05D003457 ORTHO05D009249 2.9e-08 63.2 242 28.1
unitig_90.g27506 Utricularia gibba HOM05D003457 ORTHO05D009249 2.9e-08 63.2 180 33.3
CDE01G0392 Ceratophyllum demersum HOM05D003457 ORTHO05D009249 9.3e-07 58.2 218 27.5
CDE02G1140 Ceratophyllum demersum HOM05D003457 ORTHO05D009249 2.1e-06 57.0 226 27.9


User provided reference genes

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