Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g071840 Pisum sativum HOM05D005840 ORTHO05D007144 1.5e-161 572.8 295 100.0
TPR.G33360 Trifolium pratense HOM05D005840 ORTHO05D007144 9.4e-143 510.4 296 88.2
Medtr3g092810 Medicago truncatula HOM05D005840 ORTHO05D007144 1.1e-135 486.9 298 83.6
Ca_16781_v3 Cicer arietinum L. HOM05D005840 ORTHO05D007144 1.5e-132 476.5 295 84.1
Lj1g0001826 Lotus japonicus HOM05D005840 ORTHO05D007144 1.6e-118 429.9 308 74.0
VMungo1309G2416 Vigna mungo HOM05D005840 ORTHO05D007144 8.0e-110 401.0 299 71.9
Lalb_Chr08g0239571 Lupinus albus HOM05D005840 ORTHO05D007144 1.8e-109 399.8 303 70.3
Phvul.009G044800 Phaseolus vulgaris HOM05D005840 ORTHO05D007144 8.9e-109 397.5 300 71.3
Lalb_Chr23g0271941 Lupinus albus HOM05D005840 ORTHO05D007144 4.9e-107 391.7 293 70.3
Glyma.06G136800 Glycine max HOM05D005840 ORTHO05D007144 2.7e-105 386.0 297 70.0
Glyma.04G228100 Glycine max HOM05D005840 ORTHO05D007144 3.9e-104 382.1 304 69.4
Dinv35383 Davidia involucrata HOM05D005840 ORTHO05D007144 7.5e-92 341.3 281 61.9
Manes.01G043400 Manihot esculenta HOM05D005840 ORTHO05D007144 3.2e-90 335.9 279 63.1
QL09p007163 Quercus lobata HOM05D005840 ORTHO05D007144 9.2e-90 334.3 281 62.6
CSS0020402 Camellia sinensis var. sinensis HOM05D005840 ORTHO05D007144 3.0e-88 329.3 278 61.5
PGSC0003DMG400000562 Solanum tuberosum HOM05D005840 ORTHO05D007144 5.1e-88 328.6 295 60.0
Prupe.2G319100 Prunus persica HOM05D005840 ORTHO05D007144 1.1e-87 327.4 285 59.3
Solyc03g081220.1 Solanum lycopersicum HOM05D005840 ORTHO05D007144 1.9e-87 326.6 294 58.5
MD01G1228500 Malus domestica HOM05D005840 ORTHO05D007144 2.5e-87 326.2 290 59.7
Cpa.g.sc3.150 Carica papaya HOM05D005840 ORTHO05D007144 5.6e-87 325.1 306 58.2
MD07G1299300 Malus domestica HOM05D005840 ORTHO05D007144 7.3e-87 324.7 292 58.9
CAN.G303.23 Capsicum annuum HOM05D005840 ORTHO05D007144 9.5e-87 324.3 285 59.6
Sopen03g021950 Solanum pennellii HOM05D005840 ORTHO05D007144 1.2e-86 323.9 294 59.2
CANSAT21G1965 Cannabis sativa HOM05D005840 ORTHO05D007144 2.1e-86 323.2 303 58.7
RcHm_v2.0_Chr1g0382901 Rosa chinensis HOM05D005840 ORTHO05D007144 2.8e-86 322.8 302 58.9
FvH4_7g32940 Fragaria vesca HOM05D005840 ORTHO05D007144 3.1e-85 319.3 293 61.1
Nitab4.5_0000319g0020 Nicotiana tabacum HOM05D005840 ORTHO05D007144 3.1e-85 319.3 278 59.0
Nitab4.5_0010809g0010 Nicotiana tabacum HOM05D005840 ORTHO05D007144 4.0e-85 318.9 278 59.0
Thecc.03G209000 Theobroma cacao HOM05D005840 ORTHO05D007144 5.2e-85 318.5 278 59.7
Cc02_g00800 Coffea canephora HOM05D005840 ORTHO05D007144 1.2e-84 317.4 289 59.5
TAR375G0732 Trochodendron aralioides HOM05D005840 ORTHO05D007144 3.4e-84 315.8 282 61.0
FAN03G2485 Fragaria x ananassa HOM05D005840 ORTHO05D007144 4.4e-84 315.5 296 60.1
Potri.015G002500 Populus trichocarpa HOM05D005840 ORTHO05D007144 4.4e-84 315.5 280 58.6
Oeu023690.1 Olea europaea HOM05D005840 ORTHO05D007144 9.9e-84 314.3 289 57.1
TWI14G0550 Tripterygium wilfordii HOM05D005840 ORTHO05D007144 1.3e-83 313.9 277 59.6
FAN10G0422 Fragaria x ananassa HOM05D005840 ORTHO05D007144 2.2e-83 313.2 297 59.3
FAN10G3655 Fragaria x ananassa HOM05D005840 ORTHO05D007144 2.2e-83 313.2 297 59.3
ClCG01G000060 Citrullus lanatus HOM05D005840 ORTHO05D007144 6.4e-83 311.6 235 64.7
DCAR_008987 Daucus carota HOM05D005840 ORTHO05D007144 1.1e-82 310.8 299 54.8
Sabra15G0001600 Salix brachista HOM05D005840 ORTHO05D007144 1.1e-82 310.8 270 60.0
Ciclev10021557m.g Citrus clementina HOM05D005840 ORTHO05D007144 2.7e-81 306.2 292 57.5
Duzib084G0063 Durio zibethinus HOM05D005840 ORTHO05D007144 7.8e-81 304.7 272 58.5
PGR042G3207 Punica granatum HOM05D005840 ORTHO05D007144 7.8e-81 304.7 294 59.2
MELO3C005919.2 Cucumis melo HOM05D005840 ORTHO05D007144 1.7e-80 303.5 291 54.6
Atru.chr12.2435 Acer truncatum HOM05D005840 ORTHO05D007144 6.6e-80 301.6 301 56.5
Hma1.2p1_0094F.1_g047400 Hydrangea macrophylla HOM05D005840 ORTHO05D007144 1.1e-79 300.8 219 66.7
Thhalv10005309m.g Eutrema salsugineum HOM05D005840 ORTHO05D007144 1.5e-79 300.4 285 57.5
Nn3g18788 Nelumbo nucifera HOM05D005840 ORTHO05D007144 1.5e-79 300.4 282 58.2
FAN01G0139 Fragaria x ananassa HOM05D005840 ORTHO05D007144 1.9e-79 300.1 297 57.6
PSO063G5360 Papaver somniferum HOM05D005840 ORTHO05D007144 1.9e-79 300.1 305 55.1
THA.LOC104798983 Tarenaya hassleriana HOM05D005840 ORTHO05D007144 5.6e-79 298.5 289 58.1
CsaV3_5G000100 Cucumis sativus L. HOM05D005840 ORTHO05D007144 9.6e-79 297.7 272 56.6
Sp2g22870 Schrenkiella parvula HOM05D005840 ORTHO05D007144 1.6e-78 297.0 285 57.5
BraA09t36291Z Brassica rapa HOM05D005840 ORTHO05D007144 8.1e-78 294.7 283 56.5
Migut.F00150 Erythranthe guttata HOM05D005840 ORTHO05D007144 3.1e-77 292.7 292 54.8
Ah.13g070770 Amaranthus hybridus HOM05D005840 ORTHO05D007144 5.3e-77 292.0 280 56.8
AT5G24460 Arabidopsis thaliana HOM05D005840 ORTHO05D007144 6.9e-77 291.6 285 56.1
CARHR188950 Cardamine hirsuta HOM05D005840 ORTHO05D007144 6.9e-77 291.6 291 56.7
AL6G36040 Arabidopsis lyrata HOM05D005840 ORTHO05D007144 9.0e-77 291.2 286 57.0
A09p06480 Brassica napus HOM05D005840 ORTHO05D007144 9.0e-77 291.2 283 55.8
Carub.0006s2229 Capsella rubella HOM05D005840 ORTHO05D007144 1.2e-76 290.8 286 57.0
Gorai.007G017300 Gossypium raimondii HOM05D005840 ORTHO05D007144 1.2e-76 290.8 280 57.1
Gohir.D11G016500 Gossypium hirsutum HOM05D005840 ORTHO05D007144 1.5e-76 290.4 280 56.4
Sed0003210 Sechium edule HOM05D005840 ORTHO05D007144 1.5e-76 290.4 293 56.3
Gorai.004G125300 Gossypium raimondii HOM05D005840 ORTHO05D007144 2.0e-76 290.0 289 55.0
CiPaw.06G041000 Carya illinoinensis HOM05D005840 ORTHO05D007144 2.6e-76 289.7 219 65.3
BcaC04g23543 Brassica carinata HOM05D005840 ORTHO05D007144 4.4e-76 288.9 283 55.8
C09p07230 Brassica napus HOM05D005840 ORTHO05D007144 4.4e-76 288.9 283 55.8
Lsat_1_v5_gn_9_49980 Lactuca sativa HOM05D005840 ORTHO05D007144 4.4e-76 288.9 291 55.0
Sc19g0000580 Simmondsia chinensis HOM05D005840 ORTHO05D007144 4.9e-75 285.4 282 53.2
Aa31LG11G3710 Aethionema arabicum HOM05D005840 ORTHO05D007144 8.4e-75 284.6 285 54.0
Gohir.A11G016700 Gossypium hirsutum HOM05D005840 ORTHO05D007144 1.1e-74 284.3 274 57.3
HanXRQChr10g0305331 Helianthus annuus HOM05D005840 ORTHO05D007144 1.4e-74 283.9 298 54.4
Gohir.A08G104700 Gossypium hirsutum HOM05D005840 ORTHO05D007144 1.9e-74 283.5 289 54.7
Lj3P895T18 Lonicera japonica HOM05D005840 ORTHO05D007144 1.9e-74 283.5 222 63.1
BcaNung01236 Brassica carinata HOM05D005840 ORTHO05D007144 2.4e-74 283.1 283 53.7
Oeu055391.1 Olea europaea HOM05D005840 ORTHO05D007144 2.4e-74 283.1 229 61.1
Peaxi162Scf00912g10012 Petunia axillaris HOM05D005840 ORTHO05D007144 2.4e-74 283.1 221 65.6
BolC9t53635H Brassica oleracea HOM05D005840 ORTHO05D007144 3.2e-74 282.7 283 54.8
MSTRG.26975 Avicennia marina HOM05D005840 ORTHO05D007144 5.4e-74 282.0 280 54.6
MSTRG.8611 Avicennia marina HOM05D005840 ORTHO05D007144 1.2e-73 280.8 308 53.2
Actinidia34271 Actinidia chinensis HOM05D005840 ORTHO05D007144 2.1e-73 280.0 208 64.9
COL.COLO4_14373 Corchorus olitorius HOM05D005840 ORTHO05D007144 6.0e-73 278.5 212 64.6
AUR62028079 Chenopodium quinoa HOM05D005840 ORTHO05D007144 7.8e-73 278.1 283 54.1
Haze_00300 Corylus avellana HOM05D005840 ORTHO05D007144 2.3e-72 276.6 213 64.3
SGA_v2.0_scaffold18G08468 Striga asiatica HOM05D005840 ORTHO05D007144 2.3e-72 276.6 282 55.0
BraA06t26455Z Brassica rapa HOM05D005840 ORTHO05D007144 1.1e-71 274.2 303 51.8
A06p35290 Brassica napus HOM05D005840 ORTHO05D007144 1.9e-71 273.5 290 53.8
SalBow6G2506 Salvia bowleyana HOM05D005840 ORTHO05D007144 3.3e-71 272.7 289 53.6
BcaB04g19821 Brassica carinata HOM05D005840 ORTHO05D007144 5.6e-71 271.9 207 64.3
C07p43220 Brassica napus HOM05D005840 ORTHO05D007144 5.6e-71 271.9 207 64.3
AUR62005991 Chenopodium quinoa HOM05D005840 ORTHO05D007144 1.3e-70 270.8 283 54.1
vmacro22785 Vaccinium macrocarpon HOM05D005840 ORTHO05D007144 2.8e-70 269.6 336 49.4
unitig_37.g11995 Utricularia gibba HOM05D005840 ORTHO05D007144 4.8e-70 268.9 286 51.7
Rhsim03G0215700 Rhododendron simsii HOM05D005840 ORTHO05D007144 6.2e-70 268.5 223 60.5
PSO782G2283 Papaver somniferum HOM05D005840 ORTHO05D007144 1.2e-68 264.2 205 63.4
CDE04G1956 Ceratophyllum demersum HOM05D005840 ORTHO05D007144 1.7e-67 260.4 243 55.6
MBI12_g45814_MAGBIO Magnolia biondii HOM05D005840 ORTHO05D007144 2.9e-67 259.6 307 49.8
Lsat_1_v5_gn_2_135020 Lactuca sativa HOM05D005840 ORTHO05D007144 1.1e-66 257.7 288 50.0
ECA232G4892 Erigeron canadensis HOM05D005840 ORTHO05D007144 1.9e-66 256.9 220 56.8
Sed0025728 Sechium edule HOM05D005840 ORTHO05D007144 9.3e-66 254.6 206 61.2
EL10Ac3g05171 Beta vulgaris HOM05D005840 ORTHO05D007144 1.2e-65 254.2 212 61.3
vmacro06444 Vaccinium macrocarpon HOM05D005840 ORTHO05D007144 1.0e-64 251.1 267 51.7
Aqoxy6G02459 Aquilegia oxysepala HOM05D005840 ORTHO05D007144 3.0e-64 249.6 243 53.9
Aqoxy6G02489 Aquilegia oxysepala HOM05D005840 ORTHO05D007144 3.0e-64 249.6 243 53.9
CDE12G0905 Ceratophyllum demersum HOM05D005840 ORTHO05D007144 5.1e-64 248.8 266 51.9
Actinidia08699 Actinidia chinensis HOM05D005840 ORTHO05D007144 4.0e-61 239.2 214 56.1
unitig_0.g2444 Utricularia gibba HOM05D005840 ORTHO05D007144 2.2e-59 233.4 200 57.0
Cc11_g13290 Coffea canephora HOM05D005840 ORTHO05D007144 6.4e-59 231.9 232 57.3
unitig_92.g28240 Utricularia gibba HOM05D005840 ORTHO05D007144 3.9e-56 222.6 200 56.5
BcaB04g19819 Brassica carinata HOM05D005840 ORTHO05D007144 6.5e-51 205.3 187 57.2
SEGI_38224 Sequoiadendron giganteum HOM05D005840 ORTHO05D007144 1.1e-50 204.5 203 50.7
ATR0661G235 Amborella trichopoda HOM05D005840 ORTHO05D007144 9.3e-50 201.4 202 53.5
HPP92_022381 Vanilla planifolia HOM05D005840 ORTHO05D007144 9.3e-50 201.4 212 53.8
SHI02291 Sapria himalayana HOM05D005840 ORTHO05D007144 4.6e-49 199.1 208 51.9
Mapoly0031s0111 Marchantia polymorpha HOM05D005840 ORTHO05D007144 7.4e-39 165.2 220 41.8
SMO140G0013 Selaginella moellendorffii HOM05D005840 ORTHO05D007144 6.3e-38 162.2 214 43.5
COL.COLO4_35601 Corchorus olitorius HOM05D005840 ORTHO05D007144 3.1e-37 159.8 220 43.2
Os06g0712200 Oryza sativa ssp. japonica HOM05D005840 ORTHO05D007144 4.1e-37 159.5 223 44.8
Pp3c3_29470 Physcomitrium patens HOM05D005840 ORTHO05D007144 5.3e-37 159.1 237 41.4
Zm00001eb272540 Zea mays HOM05D005840 ORTHO05D007144 6.9e-37 158.7 212 45.3
COL.COLO4_12096 Corchorus olitorius HOM05D005840 ORTHO05D007144 2.6e-36 156.8 176 50.0
BcaNung02020 Brassica carinata HOM05D005840 ORTHO05D007144 4.5e-36 156.0 126 62.7
CBR_g20004 Chara braunii HOM05D005840 ORTHO05D007144 3.2e-34 149.8 183 46.4
BcaB04g19822 Brassica carinata HOM05D005840 ORTHO05D007144 4.7e-25 119.4 118 51.7
Gohir.D08G116401 Gossypium hirsutum HOM05D005840 ORTHO05D007144 3.0e-24 116.7 112 54.5
Duzib114G0266 Durio zibethinus HOM05D005840 ORTHO05D007144 5.0e-19 99.4 133 44.4
MCO06G087 Micromonas commoda HOM05D005840 ORTHO05D007144 1.6e-17 94.4 168 38.1
SalBow4G0698 Salvia bowleyana HOM05D001856 ORTHO05D007144 1.6e-17 94.4 83 54.2
CAN.G2.4 Capsicum annuum HOM05D005840 ORTHO05D007144 3.0e-16 90.1 78 59.0
SalBow6G2140 Salvia bowleyana HOM05D005840 ORTHO05D007144 4.0e-16 89.7 61 60.7
COL.COLO4_35602 Corchorus olitorius HOM05D005840 ORTHO05D007144 2.4e-13 80.5 88 45.5
Potri.010G149800 Populus trichocarpa HOM05D005840 ORTHO05D007144 3.2e-10 70.1 84 45.2


User provided reference genes

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