Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g070080 Pisum sativum HOM05D006307 ORTHO05D008123 2.0e-189 665.6 331 100.0
Medtr3g093560 Medicago truncatula HOM05D006307 ORTHO05D008123 4.9e-132 474.9 332 73.2
TPR.G13964 Trifolium pratense HOM05D006307 ORTHO05D008123 3.4e-125 452.2 335 71.6
Ca_16847_v3 Cicer arietinum L. HOM05D006307 ORTHO05D008123 1.6e-119 433.3 328 69.2
Glyma.06G140100 Glycine max HOM05D006307 ORTHO05D008123 1.3e-100 370.5 330 61.5
Glyma.04G224600 Glycine max HOM05D006307 ORTHO05D008123 2.5e-99 366.3 330 62.1
Phvul.009G041400 Phaseolus vulgaris HOM05D006307 ORTHO05D008123 1.6e-95 353.6 341 59.8
Lj1g0008062 Lotus japonicus HOM05D006307 ORTHO05D008123 2.4e-94 349.7 332 59.0
Lalb_Chr08g0239321 Lupinus albus HOM05D006307 ORTHO05D008123 5.3e-94 348.6 328 57.9
arahy.Tifrunner.gnm1.ann1.RI9J7M Arachis hypogaea HOM05D006307 ORTHO05D008123 7.2e-91 338.2 329 55.9
VMungo1309G1947 Vigna mungo HOM05D006307 ORTHO05D008123 2.0e-88 330.1 333 57.4
arahy.Tifrunner.gnm1.ann1.SS94V0 Arachis hypogaea HOM05D006307 ORTHO05D008123 5.7e-88 328.6 329 54.7
Glyma.14G187500 Glycine max HOM05D006307 ORTHO05D008123 2.4e-78 296.6 333 50.8
Glyma.02G220300 Glycine max HOM05D006307 ORTHO05D008123 2.4e-70 270.0 337 47.5
Ciclev10033529m.g Citrus clementina HOM05D006307 ORTHO05D008123 4.5e-69 265.8 325 48.9
Phvul.008G187400 Phaseolus vulgaris HOM05D006307 ORTHO05D008123 6.5e-68 261.9 332 47.9
PGSC0003DMG400005260 Solanum tuberosum HOM05D006307 ORTHO05D008123 5.5e-67 258.8 325 47.4
arahy.Tifrunner.gnm1.ann1.8Y6D9P Arachis hypogaea HOM05D006307 ORTHO05D008123 2.1e-66 256.9 341 47.2
Ca_05544_v3 Cicer arietinum L. HOM05D006307 ORTHO05D008123 8.0e-66 255.0 333 48.9
Atru.chr12.221 Acer truncatum HOM05D006307 ORTHO05D008123 1.0e-65 254.6 333 48.6
arahy.Tifrunner.gnm1.ann1.78S8ZN Arachis hypogaea HOM05D006307 ORTHO05D008123 2.3e-65 253.4 341 46.6
Dinv21870 Davidia involucrata HOM05D006307 ORTHO05D008123 1.5e-64 250.8 331 44.7
Sopen03g025310 Solanum pennellii HOM05D006307 ORTHO05D008123 1.5e-64 250.8 332 46.4
Thecc.10G187500 Theobroma cacao HOM05D006307 ORTHO05D008123 1.5e-64 250.8 328 45.4
GSVIVG01032869001 Vitis vinifera HOM05D006307 ORTHO05D008123 1.5e-64 250.8 331 45.9
LjContig00155g0000391 Lotus japonicus HOM05D006307 ORTHO05D008123 5.7e-64 248.8 330 45.8
TWI09G1245 Tripterygium wilfordii HOM05D006307 ORTHO05D008123 5.7e-64 248.8 327 45.6
VMungo0647G2347 Vigna mungo HOM05D006307 ORTHO05D008123 5.7e-64 248.8 333 45.3
CAN.G77.11 Capsicum annuum HOM05D006307 ORTHO05D008123 2.4e-62 243.4 353 43.9
Duzib114G0239 Durio zibethinus HOM05D006307 ORTHO05D008123 3.1e-62 243.0 328 44.8
Psat2g060080 Pisum sativum HOM05D006307 ORTHO05D008123 5.4e-62 242.3 325 45.2
COL.COLO4_19496 Corchorus olitorius HOM05D006307 ORTHO05D008123 9.1e-62 241.5 334 44.6
Dinv34513 Davidia involucrata HOM05D006307 ORTHO05D008123 4.5e-61 239.2 326 46.0
Manes.07G141400 Manihot esculenta HOM05D006307 ORTHO05D008123 7.7e-61 238.4 325 44.0
CANSAT56G1764 Cannabis sativa HOM05D006307 ORTHO05D008123 1.0e-60 238.0 340 46.8
CiPaw.01G088900 Carya illinoinensis HOM05D006307 ORTHO05D008123 1.0e-60 238.0 327 46.5
Lalb_Chr10g0102911 Lupinus albus HOM05D006307 ORTHO05D008123 1.0e-60 238.0 334 46.7
FAN01G0868 Fragaria x ananassa HOM05D006307 ORTHO05D008123 1.3e-60 237.7 334 47.6
TWI73G0583 Tripterygium wilfordii HOM05D006307 ORTHO05D008123 1.7e-60 237.3 326 45.1
Actinidia01018 Actinidia chinensis HOM05D006307 ORTHO05D008123 1.5e-59 234.2 328 44.8
Medtr5g068530 Medicago truncatula HOM05D006307 ORTHO05D008123 1.9e-59 233.8 323 45.8
Nn2g10220 Nelumbo nucifera HOM05D006307 ORTHO05D008123 4.2e-59 232.6 324 43.2
Prupe.2G267300 Prunus persica HOM05D006307 ORTHO05D008123 7.2e-59 231.9 325 46.8
Nitab4.5_0000103g0020 Nicotiana tabacum HOM05D006307 ORTHO05D008123 9.5e-59 231.5 326 44.5
FvH4_7g26311 Fragaria vesca HOM05D006307 ORTHO05D008123 1.2e-58 231.1 334 47.0
TAR633G2235 Trochodendron aralioides HOM05D006307 ORTHO05D008123 1.2e-58 231.1 324 46.3
Potri.019G065500 Populus trichocarpa HOM05D006307 ORTHO05D008123 2.7e-58 229.9 328 43.9
Sabra19G0079000 Salix brachista HOM05D006307 ORTHO05D008123 1.0e-57 228.0 328 43.3
Nitab4.5_0001493g0020 Nicotiana tabacum HOM05D006307 ORTHO05D008123 1.4e-57 227.6 325 44.6
Cfa001179 Carpinus fangiana HOM05D006307 ORTHO05D008123 4.0e-57 226.1 328 44.2
Haze_17382 Corylus avellana HOM05D006307 ORTHO05D008123 1.2e-56 224.6 326 43.3
Gorai.012G012900 Gossypium raimondii HOM05D006307 ORTHO05D008123 7.5e-56 221.9 328 43.0
HanXRQChr14g0441281 Helianthus annuus HOM05D006307 ORTHO05D008123 1.7e-55 220.7 329 44.1
Gohir.A05G404900 Gossypium hirsutum HOM05D006307 ORTHO05D008123 4.9e-55 219.2 328 42.1
TPR.G27912 Trifolium pratense HOM05D006307 ORTHO05D008123 4.9e-55 219.2 339 40.7
Gohir.D04G010800 Gossypium hirsutum HOM05D006307 ORTHO05D008123 8.3e-55 218.4 328 41.8
ECA233G0944 Erigeron canadensis HOM05D006307 ORTHO05D008123 3.1e-54 216.5 332 42.2
Rhsim09G0187400 Rhododendron simsii HOM05D006307 ORTHO05D008123 3.1e-54 216.5 327 44.0
RcHm_v2.0_Chr1g0372771 Rosa chinensis HOM05D006307 ORTHO05D008123 3.1e-54 216.5 346 43.6
Cc02_g05030 Coffea canephora HOM05D006307 ORTHO05D008123 4.1e-54 216.1 329 44.1
QL08p065320 Quercus lobata HOM05D006307 ORTHO05D008123 4.1e-54 216.1 334 44.3
MD01G1172000 Malus domestica HOM05D006307 ORTHO05D008123 5.0e-52 209.1 344 43.3
AUR62032552 Chenopodium quinoa HOM05D006307 ORTHO05D008123 1.9e-51 207.2 344 40.4
Lsat_1_v5_gn_8_11140 Lactuca sativa HOM05D006307 ORTHO05D008123 3.6e-50 203.0 331 41.7
vmacro09945 Vaccinium macrocarpon HOM05D006307 ORTHO05D008123 6.1e-50 202.2 327 43.7
Ah.12g064690 Amaranthus hybridus HOM05D006307 ORTHO05D008123 5.2e-49 199.1 339 39.2
EL10Ac2g02693 Beta vulgaris HOM05D006307 ORTHO05D008123 1.7e-47 194.1 334 38.3
Cpa.g.sc65.81 Carica papaya HOM05D006307 ORTHO05D008123 4.9e-47 192.6 328 39.0
Ah.10g029650 Amaranthus hybridus HOM05D006307 ORTHO05D008123 1.1e-46 191.4 330 38.5
MSTRG.27248 Avicennia marina HOM05D006307 ORTHO05D008123 2.3e-44 183.7 330 38.2
Eucgr.G03171 Eucalyptus grandis HOM05D006307 ORTHO05D008123 3.0e-44 183.3 329 39.2
CDE04G1875 Ceratophyllum demersum HOM05D006307 ORTHO05D008123 1.5e-43 181.0 335 36.4
AUR62031669 Chenopodium quinoa HOM05D006307 ORTHO05D008123 7.3e-43 178.7 192 50.5
Medtr5g069320 Medicago truncatula HOM05D006307 ORTHO05D008123 2.8e-42 176.8 147 58.5
Eucgr.J00096 Eucalyptus grandis HOM05D006307 ORTHO05D008123 1.0e-41 174.9 335 37.0
Cc02_g04860 Coffea canephora HOM05D006307 ORTHO05D008123 2.0e-40 170.6 183 50.8
MD07G1238500 Malus domestica HOM05D006307 ORTHO05D008123 2.0e-40 170.6 150 56.0
THA.LOC104824373 Tarenaya hassleriana HOM05D006307 ORTHO05D008123 9.8e-40 168.3 350 36.0
PGR142G3034 Punica granatum HOM05D006307 ORTHO05D008123 2.2e-39 167.2 340 37.4
PGR044G1713 Punica granatum HOM05D006307 ORTHO05D008123 1.5e-35 154.5 350 34.6
Aqoxy4G03315 Aquilegia oxysepala HOM05D006307 ORTHO05D008123 3.3e-35 153.3 169 50.9
CSS0034849 Camellia sinensis var. sinensis HOM05D006307 ORTHO05D008123 5.6e-35 152.5 152 52.0
Sc11g0006110 Simmondsia chinensis HOM05D006307 ORTHO05D008123 9.5e-35 151.8 332 35.2
HPP92_019043 Vanilla planifolia HOM05D006307 ORTHO05D008123 6.2e-34 149.1 220 40.5
Migut.F00561 Erythranthe guttata HOM05D006307 ORTHO05D008123 1.8e-33 147.5 327 34.9
SGA_v2.0_scaffold60G20871 Striga asiatica HOM05D006307 ORTHO05D008123 1.5e-32 144.4 302 39.1
Solyc03g095300.4 Solanum lycopersicum HOM05D006307 ORTHO05D008123 4.4e-32 142.9 116 60.3
SalBow3G4635 Salvia bowleyana HOM05D006307 ORTHO05D008123 2.9e-31 140.2 150 51.3
AL4G38760 Arabidopsis lyrata HOM05D006307 ORTHO05D008123 6.4e-31 139.0 343 31.2
A03p22960 Brassica napus HOM05D006307 ORTHO05D008123 9.2e-30 135.2 345 34.5
CARHR135930 Cardamine hirsuta HOM05D006307 ORTHO05D008123 2.1e-29 134.0 222 37.4
Actinidia31756 Actinidia chinensis HOM05D006307 ORTHO05D008123 2.7e-29 133.7 282 35.5
DCAR_018052 Daucus carota HOM05D006307 ORTHO05D009387 4.6e-29 132.9 267 38.2
AT2G40815 Arabidopsis thaliana HOM05D006307 ORTHO05D008123 1.0e-28 131.7 148 48.0
PSO384G0230 Papaver somniferum HOM05D006307 ORTHO05D008123 1.0e-28 131.7 157 44.6
Os01g0818100 Oryza sativa ssp. japonica HOM05D006307 ORTHO05D008123 3.9e-28 129.8 328 33.5
PSO339G5993 Papaver somniferum HOM05D006307 ORTHO05D008123 6.6e-28 129.0 157 43.9
Carub.0004s2313 Capsella rubella HOM05D006307 ORTHO05D008123 8.6e-28 128.6 221 38.5
BolC3t15106H Brassica oleracea HOM05D006307 ORTHO05D008123 1.1e-27 128.3 345 32.5
Aa31LG3G1290 Aethionema arabicum HOM05D006307 ORTHO05D008123 1.9e-27 127.5 352 33.0
C03p27240 Brassica napus HOM05D006307 ORTHO05D008123 2.5e-27 127.1 345 32.2
Thhalv10016922m.g Eutrema salsugineum HOM05D006307 ORTHO05D008123 7.3e-27 125.6 341 33.4
Sp4g23140 Schrenkiella parvula HOM05D006307 ORTHO05D008123 7.3e-27 125.6 336 33.3
BcaC01g05375 Brassica carinata HOM05D006307 ORTHO05D008123 9.5e-27 125.2 222 37.8
Zm00001eb149710 Zea mays HOM05D006307 ORTHO05D008123 9.5e-27 125.2 325 31.7
BraA03t11519Z Brassica rapa HOM05D006307 ORTHO05D008123 2.8e-26 123.6 333 35.4
BcaB01g03513 Brassica carinata HOM05D006307 ORTHO05D008123 6.2e-26 122.5 147 47.6
A03p22950 Brassica napus HOM05D006307 ORTHO05D008123 1.1e-25 121.7 266 35.0
ATR1127G014 Amborella trichopoda HOM05D006307 ORTHO05D008123 2.3e-25 120.6 214 37.4
C03p27220 Brassica napus HOM05D006307 ORTHO05D008123 3.1e-25 120.2 350 34.0
BolC3t15104H Brassica oleracea HOM05D006307 ORTHO05D008123 3.1e-25 120.2 350 34.0
BraA03t11518Z Brassica rapa HOM05D006307 ORTHO05D008123 1.5e-24 117.9 226 38.1
Actinidia07776 Actinidia chinensis HOM05D006307 ORTHO05D008123 9.9e-24 115.2 133 49.6
BcaB01g03514 Brassica carinata HOM05D006307 ORTHO05D008123 2.5e-19 100.5 225 32.0
C03p27230 Brassica napus HOM05D006307 ORTHO05D008123 1.1e-17 95.1 160 37.5
BolC3t15105H Brassica oleracea HOM05D006307 ORTHO05D008123 3.1e-17 93.6 207 33.8
BcaC01g05374 Brassica carinata HOM05D006307 ORTHO05D008123 2.6e-16 90.5 164 37.8
SEGI_32602 Sequoiadendron giganteum HOM05D006307 ORTHO05D008123 2.9e-15 87.0 211 31.8
CAN.G70.11 Capsicum annuum HOM05D006307 ORTHO05D008123 3.2e-14 83.6 87 55.2
Lj4g0001384 Lotus japonicus HOM05D006307 ORTHO05D008123 4.2e-14 83.2 133 42.1
CSS0037764 Camellia sinensis var. sinensis HOM05D006307 ORTHO05D008123 7.3e-11 72.4 169 35.5
Oeu001370.1 Olea europaea HOM05D006307 ORTHO05D008123 2.1e-10 70.9 81 49.4
COL.COLO4_29200 Corchorus olitorius HOM05D001109 ORTHO05D001051 2.4e-06 57.4 107 32.7


User provided reference genes

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