Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g069640 Pisum sativum HOM05D004331 ORTHO05D004984 2.1e-189 665.6 351 100.0
Ca_16853_v3 Cicer arietinum L. HOM05D004331 ORTHO05D004984 1.1e-161 573.5 356 86.8
Ca_29501_v3 Cicer arietinum L. HOM05D004331 ORTHO05D004984 1.1e-161 573.5 356 86.8
Medtr3g093690 Medicago truncatula HOM05D004331 ORTHO05D004984 1.4e-153 546.6 347 84.1
TPR.G13966 Trifolium pratense HOM05D004331 ORTHO05D004984 1.3e-146 523.5 360 80.8
TWI73G1241 Tripterygium wilfordii HOM05D004331 ORTHO05D004984 1.2e-115 420.6 363 66.9
Glyma.06G141000 Glycine max HOM05D004331 ORTHO05D004984 9.2e-113 411.0 306 74.8
VMungo1309G0248 Vigna mungo HOM05D004331 ORTHO05D004984 1.2e-112 410.6 299 76.3
Glyma.04G223900 Glycine max HOM05D004331 ORTHO05D004984 6.6e-111 404.8 305 73.4
Phvul.009G042200 Phaseolus vulgaris HOM05D004331 ORTHO05D004984 1.9e-110 403.3 322 71.4
ClCG11G005520 Citrullus lanatus HOM05D004331 ORTHO05D004984 9.6e-110 401.0 342 67.0
C04p02240 Brassica napus HOM05D004331 ORTHO05D004984 1.2e-109 400.6 350 64.6
Duzib128G0601 Durio zibethinus HOM05D004331 ORTHO05D004984 2.8e-109 399.4 310 71.0
CANSAT56G0386 Cannabis sativa HOM05D004331 ORTHO05D004984 6.2e-109 398.3 282 74.5
Ciclev10031884m.g Citrus clementina HOM05D004331 ORTHO05D004984 1.4e-108 397.1 279 75.6
Manes.10G004100 Manihot esculenta HOM05D004331 ORTHO05D004984 1.8e-108 396.7 330 66.7
Lalb_Chr11g0067651 Lupinus albus HOM05D004331 ORTHO05D004984 2.4e-108 396.4 322 69.3
Cpa.g.sc19.35 Carica papaya HOM05D004331 ORTHO05D004984 4.0e-108 395.6 277 75.8
Duzib114G0903 Durio zibethinus HOM05D004331 ORTHO05D004984 1.2e-107 394.0 324 68.8
Sed0000286 Sechium edule HOM05D004331 ORTHO05D004984 2.0e-107 393.3 338 66.6
QL08p065166 Quercus lobata HOM05D004331 ORTHO05D004984 2.6e-107 392.9 246 82.9
TAR636G1774 Trochodendron aralioides HOM05D004331 ORTHO05D004984 9.9e-107 391.0 312 68.9
arahy.Tifrunner.gnm1.ann1.J1TSCZ Arachis hypogaea HOM05D004331 ORTHO05D004984 1.3e-106 390.6 292 72.3
Dinv34508 Davidia involucrata HOM05D004331 ORTHO05D004984 1.3e-106 390.6 344 64.8
Nitab4.5_0009756g0010 Nicotiana tabacum HOM05D004331 ORTHO05D004984 1.7e-106 390.2 273 75.1
arahy.Tifrunner.gnm1.ann1.M9I45E Arachis hypogaea HOM05D004331 ORTHO05D004984 2.9e-106 389.4 291 71.8
Cfa001189 Carpinus fangiana HOM05D004331 ORTHO05D004984 8.4e-106 387.9 287 73.5
Hund13431 Selenicereus undatus HOM05D004331 ORTHO05D004984 8.4e-106 387.9 282 72.7
MSTRG.156 Avicennia marina HOM05D004331 ORTHO05D004984 1.4e-105 387.1 288 71.2
Haze_17376 Corylus avellana HOM05D004331 ORTHO05D004984 1.4e-105 387.1 287 73.5
A05p01900 Brassica napus HOM05D004331 ORTHO05D004984 5.4e-105 385.2 327 64.2
BraA05t19188Z Brassica rapa HOM05D004331 ORTHO05D004984 5.4e-105 385.2 327 64.2
Lj1g0025811 Lotus japonicus HOM05D004331 ORTHO05D004984 7.1e-105 384.8 344 64.5
AT2G40800 Arabidopsis thaliana HOM05D004331 ORTHO05D004984 4.6e-104 382.1 260 74.2
CsaV3_5G039270 Cucumis sativus L. HOM05D004331 ORTHO05D004984 4.6e-104 382.1 332 66.0
Sc11g0006070 Simmondsia chinensis HOM05D004331 ORTHO05D004984 6.0e-104 381.7 277 71.1
CARHR135900 Cardamine hirsuta HOM05D004331 ORTHO05D004984 2.3e-103 379.8 262 74.0
MELO3C022105.2 Cucumis melo HOM05D004331 ORTHO05D004984 2.3e-103 379.8 289 71.3
Migut.F00564 Erythranthe guttata HOM05D004331 ORTHO05D004984 3.0e-103 379.4 324 66.4
BcaC02g12734 Brassica carinata HOM05D004331 ORTHO05D004984 3.9e-103 379.0 259 74.1
Peaxi162Scf00073g02119 Petunia axillaris HOM05D004331 ORTHO05D004984 6.6e-103 378.3 319 65.5
AL4G38690 Arabidopsis lyrata HOM05D004331 ORTHO05D004984 1.1e-102 377.5 258 74.0
FvH4_7g26230 Fragaria vesca HOM05D004331 ORTHO05D004984 1.5e-102 377.1 247 77.7
MD07G1237400 Malus domestica HOM05D004331 ORTHO05D004984 1.5e-102 377.1 311 65.9
Carub.0005s2321 Capsella rubella HOM05D004331 ORTHO05D004984 2.5e-102 376.3 265 72.8
RcHm_v2.0_Chr1g0372681 Rosa chinensis HOM05D004331 ORTHO05D004984 2.5e-102 376.3 310 67.1
BolC4t21871H Brassica oleracea HOM05D004331 ORTHO05D004984 3.3e-102 375.9 325 64.0
Potri.019G062200 Populus trichocarpa HOM05D004331 ORTHO05D004984 5.6e-102 375.2 304 68.8
FAN10G3590 Fragaria x ananassa HOM05D004331 ORTHO05D004984 7.3e-102 374.8 256 75.0
AT3G56430 Arabidopsis thaliana HOM05D004331 ORTHO05D004984 9.6e-102 374.4 264 72.3
MD01G1171000 Malus domestica HOM05D004331 ORTHO05D004984 9.6e-102 374.4 317 64.7
Gohir.D10G184000 Gossypium hirsutum HOM05D004331 ORTHO05D004984 1.6e-101 373.6 280 70.0
Gorai.011G206200 Gossypium raimondii HOM05D004331 ORTHO05D004984 1.6e-101 373.6 280 70.0
FAN06G3213 Fragaria x ananassa HOM05D004331 ORTHO05D004984 2.1e-101 373.2 292 68.5
SGA_v2.0_scaffold397G50761 Striga asiatica HOM05D004331 ORTHO05D004984 2.1e-101 373.2 278 71.2
Atru.chr12.214 Acer truncatum HOM05D004331 ORTHO05D004984 3.6e-101 372.5 312 65.7
AL5G37760 Arabidopsis lyrata HOM05D004331 ORTHO05D004984 3.6e-101 372.5 264 72.3
Thhalv10016808m.g Eutrema salsugineum HOM05D004331 ORTHO05D004984 4.8e-101 372.1 312 65.4
Sp4g23120 Schrenkiella parvula HOM05D004331 ORTHO05D004984 4.8e-101 372.1 306 67.3
HanXRQChr07g0204811 Helianthus annuus HOM05D004331 ORTHO05D004984 8.1e-101 371.3 313 64.2
THA.LOC104824369 Tarenaya hassleriana HOM05D004331 ORTHO05D004984 1.1e-100 370.9 254 74.8
Gohir.A10G177400 Gossypium hirsutum HOM05D004331 ORTHO05D004984 2.4e-100 369.8 280 69.6
Hma1.2p1_0264F.1_g105850 Hydrangea macrophylla HOM05D004331 ORTHO05D004984 9.0e-100 367.9 329 63.5
Thhalv10006036m.g Eutrema salsugineum HOM05D004331 ORTHO05D004984 1.2e-99 367.5 252 73.8
THA.LOC104814366 Tarenaya hassleriana HOM05D004331 ORTHO05D004984 2.0e-99 366.7 258 72.1
Sabra19G0081100 Salix brachista HOM05D004331 ORTHO05D004984 2.6e-99 366.3 301 67.8
Sabra19G0075700 Salix brachista HOM05D004331 ORTHO05D004984 3.4e-99 365.9 327 64.2
Sp5g06060 Schrenkiella parvula HOM05D004331 ORTHO05D004984 5.8e-99 365.2 276 68.8
Sopen03g025450 Solanum pennellii HOM05D004331 ORTHO05D004984 5.8e-99 365.2 249 75.1
CARHR166560 Cardamine hirsuta HOM05D004331 ORTHO05D004984 9.9e-99 364.4 252 73.0
Eucgr.L02349 Eucalyptus grandis HOM05D004331 ORTHO05D004984 9.9e-99 364.4 253 72.7
Solyc03g095470.3 Solanum lycopersicum HOM05D004331 ORTHO05D004984 1.3e-98 364.0 249 74.7
PGR142G0580 Punica granatum HOM05D004331 ORTHO05D004984 3.8e-98 362.5 275 70.2
PGSC0003DMG400005253 Solanum tuberosum HOM05D004331 ORTHO05D004984 3.8e-98 362.5 246 75.2
Actinidia01013 Actinidia chinensis HOM05D004331 ORTHO05D004984 4.9e-98 362.1 307 64.8
CSS0028422 Camellia sinensis var. sinensis HOM05D004331 ORTHO05D004984 4.9e-98 362.1 321 63.6
Aa31LG10G11310 Aethionema arabicum HOM05D004331 ORTHO05D004984 1.1e-97 360.9 352 58.8
Lalb_Chr08g0239281 Lupinus albus HOM05D004331 ORTHO05D004984 1.1e-97 360.9 325 64.0
AUR62032546 Chenopodium quinoa HOM05D004331 ORTHO05D004984 1.4e-97 360.5 238 74.8
COL.COLO4_19485 Corchorus olitorius HOM05D004331 ORTHO05D004984 1.4e-97 360.5 285 68.1
Lj1A969T93 Lonicera japonica HOM05D004331 ORTHO05D004984 1.4e-97 360.5 304 66.1
MBI15_g36678_MAGBIO Magnolia biondii HOM05D004331 ORTHO05D004984 1.9e-97 360.1 271 70.1
Thecc.10G186200 Theobroma cacao HOM05D004331 ORTHO05D004984 1.9e-97 360.1 294 67.3
Eucgr.G03152 Eucalyptus grandis HOM05D004331 ORTHO05D004984 2.4e-97 359.8 244 73.8
CAN.G30.2 Capsicum annuum HOM05D004331 ORTHO05D004984 5.4e-97 358.6 304 66.1
EL10Ac2g02684 Beta vulgaris HOM05D004331 ORTHO05D004984 7.1e-97 358.2 282 67.4
Nn5g26801 Nelumbo nucifera HOM05D004331 ORTHO05D004984 7.1e-97 358.2 298 64.8
DCAR_020157 Daucus carota HOM05D004331 ORTHO05D004984 7.8e-96 354.8 252 71.8
ATR1127G084 Amborella trichopoda HOM05D004331 ORTHO05D004984 1.3e-95 354.0 281 68.0
Lsat_1_v5_gn_2_127600 Lactuca sativa HOM05D004331 ORTHO05D004984 2.3e-95 353.2 284 66.2
Actinidia07780 Actinidia chinensis HOM05D004331 ORTHO05D004984 3.0e-95 352.8 258 71.7
A09p49380 Brassica napus HOM05D004331 ORTHO05D004984 3.0e-95 352.8 232 74.6
BraA09t40391Z Brassica rapa HOM05D004331 ORTHO05D004984 3.0e-95 352.8 232 74.6
SalBow3G0869 Salvia bowleyana HOM05D004331 ORTHO05D004984 9.6e-94 347.8 304 63.2
Aqoxy4G03301 Aquilegia oxysepala HOM05D004331 ORTHO05D004984 2.8e-93 346.3 246 71.5
vmacro09950 Vaccinium macrocarpon HOM05D004331 ORTHO05D004984 3.6e-93 345.9 331 58.6
SEGI_36006 Sequoiadendron giganteum HOM05D004331 ORTHO05D004984 9.0e-92 341.3 275 65.5
Rhsim09G0186700 Rhododendron simsii HOM05D004331 ORTHO05D004984 2.0e-91 340.1 252 70.6
BolC8t50795H Brassica oleracea HOM05D004331 ORTHO05D004984 2.6e-91 339.7 215 76.7
unitig_88.g27825 Utricularia gibba HOM05D004331 ORTHO05D004984 3.8e-90 335.9 252 68.7
Os01g0168300 Oryza sativa ssp. japonica HOM05D004331 ORTHO05D004984 4.2e-89 332.4 324 59.9
HPP92_012570 Vanilla planifolia HOM05D004331 ORTHO05D004984 2.7e-88 329.7 256 67.6
ECA238G1814 Erigeron canadensis HOM05D004331 ORTHO05D004984 3.5e-88 329.3 214 75.2
Dinv21866 Davidia involucrata HOM05D004331 ORTHO05D004984 1.0e-87 327.8 200 82.0
PSO017G4126 Papaver somniferum HOM05D004331 ORTHO05D004984 6.7e-87 325.1 283 63.6
SGA_v2.0_scaffold60G20876 Striga asiatica HOM05D004331 ORTHO05D004984 1.1e-86 324.3 275 62.9
PSO170G2208 Papaver somniferum HOM05D004331 ORTHO05D004984 1.4e-84 317.4 284 61.3
Pp3c7_18440 Physcomitrium patens HOM05D004331 ORTHO05D004984 8.4e-82 308.1 256 62.9
AagrBONN_evm.TU.Sc2ySwM_340.90 Anthoceros agrestis HOM05D004331 ORTHO05D004984 6.0e-80 302.0 256 62.1
FAN01G2544 Fragaria x ananassa HOM05D004331 ORTHO05D004984 6.0e-80 302.0 179 83.2
Actinidia13632 Actinidia chinensis HOM05D004331 ORTHO05D004984 1.0e-79 301.2 243 68.3
GSVIVG01032862001 Vitis vinifera HOM05D004331 ORTHO05D004984 1.8e-79 300.4 178 83.1
Mapoly0158s0020 Marchantia polymorpha HOM05D004331 ORTHO05D004984 8.7e-79 298.1 318 52.5
Cc02_g05110 Coffea canephora HOM05D004331 ORTHO05D004984 1.1e-78 297.7 179 82.7
Pp3c1_5190 Physcomitrium patens HOM05D004331 ORTHO05D004984 1.3e-77 294.3 249 61.4
BcaC07g39957 Brassica carinata HOM05D004331 ORTHO05D004984 3.7e-77 292.7 312 54.8
SMO361G0183 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 4.6e-72 275.8 255 54.9
C08p31740 Brassica napus HOM05D004331 ORTHO05D004984 7.9e-72 275.0 327 52.0
SMO199G0115 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 1.3e-71 274.2 256 54.3
CBR_g29882 Chara braunii HOM05D004331 ORTHO05D004984 1.3e-69 267.7 223 60.5
CiPaw.02G199300 Carya illinoinensis HOM05D004331 ORTHO05D004984 2.2e-69 266.9 257 61.9
Oeu039397.2 Olea europaea HOM05D004331 ORTHO05D004984 3.1e-68 263.1 192 72.9
Nitab4.5_0018056g0010 Nicotiana tabacum HOM05D004331 ORTHO05D004984 1.7e-66 257.3 189 70.4
AUR62030578 Chenopodium quinoa HOM05D004331 ORTHO05D004984 1.4e-65 254.2 154 79.9
CiPaw.01G307700 Carya illinoinensis HOM05D004331 ORTHO05D004984 4.8e-61 239.2 158 77.8
Zm00001eb336450 Zea mays HOM05D004331 ORTHO05D004984 1.2e-59 234.6 197 66.0
Ah.10g029610 Amaranthus hybridus HOM05D000033 ORTHO05D000913 8.5e-58 228.4 154 75.3
Manes.03G048500 Manihot esculenta HOM05D004331 ORTHO05D004984 6.3e-53 212.2 347 43.8
BcaC04g21857 Brassica carinata HOM05D004331 ORTHO05D004984 1.3e-50 204.5 132 78.8
BcaC09g50949 Brassica carinata HOM05D004331 ORTHO05D004984 1.7e-50 204.1 132 79.5
BcaC02g11378 Brassica carinata HOM05D004331 ORTHO05D004984 8.5e-50 201.8 132 78.8
C04p16400 Brassica napus HOM05D004331 ORTHO05D004984 8.5e-50 201.8 132 78.8
C09p26570 Brassica napus HOM05D004331 ORTHO05D004984 1.5e-49 201.1 132 78.0
BolC9t55553H Brassica oleracea HOM05D004331 ORTHO05D004984 1.5e-49 201.1 132 78.0
SMO361G0787 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 1.9e-49 200.7 224 45.5
SMO361G0173 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 7.2e-49 198.7 224 45.1
Prupe.2G266500 Prunus persica HOM05D004331 ORTHO05D004984 1.6e-48 197.6 312 43.6
Carub.0004s2310 Capsella rubella HOM05D004331 ORTHO05D004984 2.3e-47 193.7 315 44.1
BcaC09g50388 Brassica carinata HOM05D004331 ORTHO05D004984 1.4e-44 184.5 112 79.5
BolC1t02551H Brassica oleracea HOM05D004331 ORTHO05D004984 7.0e-44 182.2 112 78.6
C01p26060 Brassica napus HOM05D004331 ORTHO05D004984 7.7e-43 178.7 112 77.7
MSTRG.8387 Avicennia marina HOM05D004331 ORTHO05D004984 1.6e-40 171.0 286 42.0
C01p18940 Brassica napus HOM05D004331 ORTHO05D004984 8.0e-40 168.7 102 78.4
BolC1t01820H Brassica oleracea HOM05D004331 ORTHO05D004984 8.0e-40 168.7 102 78.4
C03p81590 Brassica napus HOM05D004331 ORTHO05D004984 3.4e-38 163.3 104 84.6
BolC3t20429H Brassica oleracea HOM05D004331 ORTHO05D004984 3.4e-38 163.3 104 84.6
Cre05.g232752 Chlamydomonas reinhardtii HOM05D004331 ORTHO05D004984 1.3e-37 161.4 265 37.0
BcaC01g00580 Brassica carinata HOM05D003032 ORTHO05D003456 3.7e-37 159.8 104 83.7
PRCOL_00001688 Prasinoderma coloniale HOM05D004331 ORTHO05D004984 2.4e-36 157.1 255 38.8
Actinidia31642 Actinidia chinensis HOM05D004331 ORTHO05D004984 2.7e-32 143.7 163 54.0
BcaC04g23398 Brassica carinata HOM05D004331 ORTHO05D004984 1.4e-31 141.4 110 66.4
SHI31864 Sapria himalayana HOM05D004331 ORTHO05D004984 4.0e-31 139.8 91 75.8
HPP92_012539 Vanilla planifolia HOM05D004331 ORTHO05D004984 1.6e-27 127.9 142 53.5
CiPaw.01G307900 Carya illinoinensis HOM05D004331 ORTHO05D004984 4.2e-25 119.8 177 49.2
Ah.10g029620 Amaranthus hybridus HOM05D004331 ORTHO05D004984 8.0e-24 115.5 83 68.7
MBI15_g10655_MAGBIO Magnolia biondii HOM05D004331 ORTHO05D004984 8.0e-24 115.5 114 57.9
VMungo0540G1227 Vigna mungo HOM05D004331 ORTHO05D004984 4.0e-23 113.2 79 79.7
AUR62030577 Chenopodium quinoa HOM05D004331 ORTHO05D004984 1.2e-22 111.7 106 58.5
BolC9t53789H Brassica oleracea HOM05D004331 ORTHO05D004984 3.4e-22 110.2 63 87.3
Eucgr.G03162 Eucalyptus grandis HOM05D004331 ORTHO05D004984 3.4e-22 110.2 149 49.0
SHI31863 Sapria himalayana HOM05D004331 ORTHO05D004984 1.2e-19 101.7 75 66.7
SHI31865 Sapria himalayana HOM05D004331 ORTHO05D004984 7.8e-19 99.0 83 56.6
Aqoxy4G02083 Aquilegia oxysepala HOM05D004331 ORTHO05D004984 6.6e-18 95.9 63 69.8
Zm00001eb123190 Zea mays HOM05D004331 ORTHO05D004984 1.1e-17 95.1 92 57.6
MCO04G099 Micromonas commoda HOM05D004331 ORTHO05D004984 2.5e-17 94.0 202 31.2
BraA04t18575Z Brassica rapa HOM05D004331 ORTHO05D016805 3.7e-13 80.1 44 86.4
BolC4t28360H Brassica oleracea HOM05D004331 ORTHO05D004984 1.3e-10 71.6 68 54.4
C08p13890 Brassica napus HOM05D013285 ORTHO05D004984 3.0e-10 70.5 75 53.3


User provided reference genes

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