Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g067680 Pisum sativum HOM05D006503 ORTHO05D008116 9.7e-237 823.9 748 100.0
Medtr5g018230 Medicago truncatula HOM05D006503 ORTHO05D008116 1.5e-149 534.3 750 74.1
Medtr5g039700 Medicago truncatula HOM05D006503 ORTHO05D008116 3.8e-148 529.6 750 74.5
TPR.G16108 Trifolium pratense HOM05D006503 ORTHO05D008116 2.6e-141 506.9 755 71.8
Ca_06133_v3 Cicer arietinum L. HOM05D006503 ORTHO05D008116 3.5e-125 453.4 670 79.4
TPR.G29649 Trifolium pratense HOM05D006503 ORTHO05D008116 5.2e-121 439.5 760 73.8
arahy.Tifrunner.gnm1.ann1.ER6M1I Arachis hypogaea HOM05D006503 ORTHO05D008116 1.7e-84 318.2 715 68.1
arahy.Tifrunner.gnm1.ann1.YC2S1L Arachis hypogaea HOM05D006503 ORTHO05D008116 6.6e-84 316.2 715 67.8
arahy.Tifrunner.gnm1.ann1.GW2J4P Arachis hypogaea HOM05D006503 ORTHO05D008116 3.3e-83 313.9 706 68.3
arahy.Tifrunner.gnm1.ann1.97ANKK Arachis hypogaea HOM05D006503 ORTHO05D008116 7.3e-83 312.8 717 68.3
Lalb_Chr13g0292411 Lupinus albus HOM05D006503 ORTHO05D008116 9.5e-83 312.4 707 68.6
arahy.Tifrunner.gnm1.ann1.RL700P Arachis hypogaea HOM05D006503 ORTHO05D008116 1.4e-81 308.5 705 69.4
arahy.Tifrunner.gnm1.ann1.KC4DMY Arachis hypogaea HOM05D006503 ORTHO05D008116 3.4e-72 277.3 312 66.0
Glyma.06G144800 Glycine max HOM05D006503 ORTHO05D008116 3.8e-71 273.9 322 70.2
VMungo1309G1456 Vigna mungo HOM05D006503 ORTHO05D008116 1.9e-67 261.5 758 53.7
Prupe.4G124200 Prunus persica HOM05D006503 ORTHO05D008116 7.3e-67 259.6 313 67.1
MD05G1241300 Malus domestica HOM05D006503 ORTHO05D008116 8.1e-66 256.1 312 66.7
RcHm_v2.0_Chr5g0022901 Rosa chinensis HOM05D006503 ORTHO05D008116 1.4e-65 255.4 313 66.5
Medtr8g463610 Medicago truncatula HOM05D006503 ORTHO05D008116 5.2e-65 253.4 289 60.2
Cfa017777 Carpinus fangiana HOM05D006503 ORTHO05D008116 2.9e-63 247.7 322 64.0
VMungo1127G1467 Vigna mungo HOM05D006503 ORTHO05D008116 1.1e-62 245.7 741 53.6
arahy.Tifrunner.gnm1.ann1.J10LLE Arachis hypogaea HOM05D006503 ORTHO05D008116 4.6e-61 240.4 698 58.2
TWI77G0486 Tripterygium wilfordii HOM05D006503 ORTHO05D008116 3.0e-60 237.7 306 64.1
Atru.BG.180.p Acer truncatum HOM05D006503 ORTHO05D008116 8.7e-60 236.1 315 64.4
QL04p096113 Quercus lobata HOM05D006503 ORTHO05D008116 2.5e-59 234.6 313 60.1
QL04p096294 Quercus lobata HOM05D006503 ORTHO05D008116 2.5e-59 234.6 313 62.0
Lj6g0025212 Lotus japonicus HOM05D006503 ORTHO05D008116 5.6e-59 233.4 306 69.0
arahy.Tifrunner.gnm1.ann1.1KXV0X Arachis hypogaea HOM05D006503 ORTHO05D008116 1.3e-58 232.3 325 53.8
Lju124C42T22 Lonicera japonica HOM05D006503 ORTHO05D008116 1.3e-58 232.3 330 60.9
Oeu016352.1 Olea europaea HOM05D006503 ORTHO05D008116 1.6e-58 231.9 316 63.3
CAN.G1274.14 Capsicum annuum HOM05D006503 ORTHO05D008116 3.1e-57 227.6 320 60.9
CANSAT21G0513 Cannabis sativa HOM05D006503 ORTHO05D008116 4.0e-57 227.3 313 62.9
Cc06_g17640 Coffea canephora HOM05D006503 ORTHO05D008116 6.9e-57 226.5 325 57.8
Peaxi162Scf00020g00194 Petunia axillaris HOM05D006503 ORTHO05D008116 1.7e-55 221.9 319 61.4
Ciclev10004347m.g Citrus clementina HOM05D006503 ORTHO05D008116 2.2e-55 221.5 313 62.9
Duzib150G0906 Durio zibethinus HOM05D006503 ORTHO05D008116 2.9e-55 221.1 303 64.0
CiPaw.15G110400 Carya illinoinensis HOM05D006503 ORTHO05D008116 3.8e-55 220.7 314 55.1
COL.COLO4_08106 Corchorus olitorius HOM05D006503 ORTHO05D008116 3.8e-55 220.7 324 55.9
MSTRG.6424 Avicennia marina HOM05D006503 ORTHO05D008116 1.4e-54 218.8 329 57.1
Migut.J01751 Erythranthe guttata HOM05D006503 ORTHO05D008116 2.1e-53 214.9 331 56.8
ClCG02G018860 Citrullus lanatus HOM05D006503 ORTHO05D008116 4.6e-53 213.8 303 62.4
ECA248G2018 Erigeron canadensis HOM05D006503 ORTHO05D008116 1.5e-51 208.8 329 56.5
Sed0013522 Sechium edule HOM05D006503 ORTHO05D008116 7.4e-51 206.5 328 52.1
Actinidia38544 Actinidia chinensis HOM05D006503 ORTHO05D008116 3.7e-50 204.1 279 62.7
SalBow6G5105 Salvia bowleyana HOM05D006503 ORTHO05D008116 2.6e-48 198.0 331 52.9
HanXRQChr13g0395951 Helianthus annuus HOM05D006503 ORTHO05D008116 9.9e-48 196.1 330 57.0
Potri.006G049400 Populus trichocarpa HOM05D006503 ORTHO05D008116 2.2e-47 194.9 319 57.1
Dinv36159 Davidia involucrata HOM05D006503 ORTHO05D008116 1.1e-46 192.6 323 57.3
FvH4_3g13661 Fragaria vesca HOM05D006503 ORTHO05D008116 1.1e-46 192.6 312 58.7
Hma1.2p1_1041F.1_g251090 Hydrangea macrophylla HOM05D006503 ORTHO05D008116 2.4e-46 191.4 302 51.7
Manes.09G020600 Manihot esculenta HOM05D006503 ORTHO05D008116 2.4e-46 191.4 314 57.3
Thecc.09G181100 Theobroma cacao HOM05D006503 ORTHO05D008116 2.4e-46 191.4 325 55.1
Nitab4.5_0002332g0010 Nicotiana tabacum HOM05D006503 ORTHO05D008116 3.5e-45 187.6 260 66.2
Sopen02g028560 Solanum pennellii HOM05D006503 ORTHO05D008116 2.3e-44 184.9 315 59.0
PGSC0003DMG401003570 Solanum tuberosum HOM05D006503 ORTHO05D008116 3.3e-43 181.0 315 59.0
MELO3C019605.2 Cucumis melo HOM05D006503 ORTHO05D008116 4.8e-42 177.2 322 57.5
SGA_v2.0_scaffold10G05267 Striga asiatica HOM05D006503 ORTHO05D008116 4.8e-42 177.2 272 61.8
CsaV3_6G013320 Cucumis sativus L. HOM05D006503 ORTHO05D008116 1.4e-41 175.6 308 59.7
BraA02t07289Z Brassica rapa HOM05D006503 ORTHO05D008116 1.8e-41 175.3 327 46.5
BcaC03g15903 Brassica carinata HOM05D006503 ORTHO05D008116 2.4e-41 174.9 308 47.4
BolC2t09665H Brassica oleracea HOM05D006503 ORTHO05D008116 2.4e-41 174.9 308 47.4
A02p22890 Brassica napus HOM05D006503 ORTHO05D008116 3.1e-41 174.5 327 46.2
C02p36700 Brassica napus HOM05D006503 ORTHO05D008116 5.3e-41 173.7 327 46.2
Aa31LG4G1470 Aethionema arabicum HOM05D006503 ORTHO05D008116 1.5e-40 172.2 327 43.4
BcaB05g25205 Brassica carinata HOM05D006503 ORTHO05D008116 1.5e-40 172.2 308 47.1
Thhalv10018150m.g Eutrema salsugineum HOM05D006503 ORTHO05D008116 1.5e-40 172.2 308 46.8
CARHR036700 Cardamine hirsuta HOM05D006503 ORTHO05D008116 2.0e-40 171.8 307 47.6
Sp5g34600 Schrenkiella parvula HOM05D006503 ORTHO05D008116 2.0e-40 171.8 308 46.8
AT1G79540 Arabidopsis thaliana HOM05D006503 ORTHO05D008116 2.6e-40 171.4 308 42.9
CSS0000010 Camellia sinensis var. sinensis HOM05D006503 ORTHO05D008116 2.6e-40 171.4 323 50.5
AL2G40180 Arabidopsis lyrata HOM05D006503 ORTHO05D008116 4.5e-40 170.6 310 42.6
Rhsim04G0102600 Rhododendron simsii HOM05D006503 ORTHO05D008116 2.9e-39 167.9 324 51.2
Lsat_1_v5_gn_5_161280 Lactuca sativa HOM05D006503 ORTHO05D008116 8.4e-39 166.4 312 45.5
Solyc02g083780.3 Solanum lycopersicum HOM05D002880 ORTHO05D008116 3.2e-38 164.5 282 61.7
vmacro09073 Vaccinium macrocarpon HOM05D006503 ORTHO05D008116 3.2e-38 164.5 246 65.9
SHI16040 Sapria himalayana HOM05D006503 ORTHO05D008116 7.1e-38 163.3 302 50.0
Sc13g0001660 Simmondsia chinensis HOM05D006503 ORTHO05D008116 6.0e-37 160.2 316 54.1
SalBow6G4098 Salvia bowleyana HOM05D006503 ORTHO05D008116 1.1e-35 156.0 331 48.6
Sabra06G0034600 Salix brachista HOM05D006503 ORTHO05D008116 2.2e-34 151.8 183 41.5
AUR62038172 Chenopodium quinoa HOM05D006503 ORTHO05D008116 6.3e-34 150.2 308 49.4
AUR62038078 Chenopodium quinoa HOM05D006503 ORTHO05D008116 8.2e-34 149.8 308 49.4
Aqoxy2G03029 Aquilegia oxysepala HOM05D006503 ORTHO05D008116 5.3e-33 147.1 301 54.2
Cpa.g.sc32.63 Carica papaya HOM05D006503 ORTHO05D008116 1.7e-31 142.1 173 41.6
THA.LOC104808133 Tarenaya hassleriana HOM05D006503 ORTHO05D008116 1.7e-31 142.1 310 38.7
Nn5g26957 Nelumbo nucifera HOM05D006503 ORTHO05D008116 1.4e-30 139.0 227 69.2
Phvul.009G141200 Phaseolus vulgaris HOM05D006503 ORTHO05D008116 1.4e-28 132.5 162 46.9
DCAR_022897 Daucus carota HOM05D006503 ORTHO05D008116 3.0e-28 131.3 302 53.3
TAR633G2684 Trochodendron aralioides HOM05D000623 ORTHO05D008116 5.7e-27 127.1 227 63.4
TAR633G2474 Trochodendron aralioides HOM05D006503 ORTHO05D008116 4.8e-26 124.0 321 48.9
arahy.Tifrunner.gnm1.ann1.6F2C80 Arachis hypogaea HOM05D006503 ORTHO05D008116 6.3e-26 123.6 108 56.5
Carub.0002s2640 Capsella rubella HOM05D006503 ORTHO05D008116 6.3e-26 123.6 310 38.1
Zm00001eb221750 Zea mays HOM05D006503 ORTHO05D008116 1.4e-25 122.5 321 52.6
arahy.Tifrunner.gnm1.ann1.C3XHUQ Arachis hypogaea HOM05D006503 ORTHO05D008116 1.2e-24 119.4 115 51.3
Os09g0110200 Oryza sativa ssp. japonica HOM05D006503 ORTHO05D008116 1.5e-24 119.0 306 53.9
TPR.G11576 Trifolium pratense HOM05D006503 ORTHO05D008116 1.0e-23 116.3 71 78.9
ATR0561G112 Amborella trichopoda HOM05D006503 ORTHO05D008116 2.9e-23 114.8 252 57.9
HPP92_001414 Vanilla planifolia HOM05D006503 ORTHO05D008116 6.5e-23 113.6 320 46.2
GSVIVG01033259001 Vitis vinifera HOM05D006503 ORTHO05D008116 4.2e-22 110.9 238 31.1
HPP92_001421 Vanilla planifolia HOM05D006503 ORTHO05D008116 9.4e-22 109.8 318 45.9
PGR004G2741 Punica granatum HOM05D006503 ORTHO05D008116 1.2e-21 109.4 217 66.4
Hund03989 Selenicereus undatus HOM05D006503 ORTHO05D008116 1.6e-21 109.0 195 62.6
CDE05G1884 Ceratophyllum demersum HOM05D006503 ORTHO05D008116 2.1e-21 108.6 253 29.6
Ah.13g074010 Amaranthus hybridus HOM05D006503 ORTHO05D008116 5.1e-20 104.0 320 38.1
Eucgr.A02340 Eucalyptus grandis HOM05D006503 ORTHO05D008116 4.4e-19 100.9 175 32.6
TAR629G2271 Trochodendron aralioides HOM05D006503 ORTHO05D008116 2.8e-18 98.2 227 46.7
Gohir.A05G408900 Gossypium hirsutum HOM05D006503 ORTHO05D008116 7.0e-17 93.6 127 38.6
Gohir.D04G006500 Gossypium hirsutum HOM05D006503 ORTHO05D008116 2.6e-16 91.7 127 37.8
Gorai.012G007700 Gossypium raimondii HOM05D006503 ORTHO05D008116 2.6e-16 91.7 127 37.8
Nitab4.5_0000051g0090 Nicotiana tabacum HOM05D006503 ORTHO05D008116 5.9e-16 90.5 165 76.4
CSS0042104 Camellia sinensis var. sinensis HOM05D006503 ORTHO05D008116 1.0e-15 89.7 117 35.9
Glyma.04G221000 Glycine max HOM05D006503 ORTHO05D008116 2.9e-15 88.2 60 71.7
Medtr3g094280 Medicago truncatula HOM05D006503 ORTHO05D008116 2.1e-13 82.0 52 75.0
arahy.Tifrunner.gnm1.ann1.LJ83VM Arachis hypogaea HOM05D006503 ORTHO05D008116 1.4e-12 79.3 81 49.4
Actinidia17234 Actinidia chinensis HOM05D006503 ORTHO05D008116 1.8e-12 79.0 118 33.9
ATR0177G061 Amborella trichopoda HOM05D006503 ORTHO05D008116 3.9e-12 77.8 62 61.3
SEGI_01901 Sequoiadendron giganteum HOM05D006503 ORTHO05D008116 1.3e-10 72.8 243 51.9
VMungo1127G2158 Vigna mungo HOM05D006503 ORTHO05D008116 2.6e-08 65.1 52 59.6
COL.COLO4_35387 Corchorus olitorius HOM05D006707 ORTHO05D008243 1.3e-07 62.8 127 31.5
vmacro13799 Vaccinium macrocarpon HOM05D000162 ORTHO05D000090 3.2e-06 58.2 111 30.6
PSO017G1759 Papaver somniferum HOM05D007661 ORTHO05D009671 7.2e-06 57.0 123 26.0
PSO063G2745 Papaver somniferum HOM05D007661 ORTHO05D009671 7.2e-06 57.0 123 26.0
CANSAT11G0234 Cannabis sativa HOM05D006842 ORTHO05D008908 9.4e-06 56.6 131 32.8
Migut.G00038 Erythranthe guttata HOM05D007409 ORTHO05D009264 9.4e-06 56.6 76 35.5
Migut.O00586 Erythranthe guttata HOM05D007409 ORTHO05D009264 9.4e-06 56.6 76 35.5


User provided reference genes

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