Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g060360 Pisum sativum HOM05D006319 ORTHO05D007963 1.3e-129 466.5 240 100.0
Medtr3g096750 Medicago truncatula HOM05D006319 ORTHO05D007963 9.5e-101 370.5 240 81.2
Phvul.009G154200 Phaseolus vulgaris HOM05D006319 ORTHO05D007963 1.7e-81 306.6 248 69.4
Lalb_Chr08g0238171 Lupinus albus HOM05D006319 ORTHO05D007963 2.2e-81 306.2 252 68.7
Glyma.06G156100 Glycine max HOM05D006319 ORTHO05D007963 6.4e-81 304.7 256 68.8
Glyma.04G209900 Glycine max HOM05D006319 ORTHO05D007963 1.7e-78 296.6 250 68.8
VMungo0464G0362 Vigna mungo HOM05D006319 ORTHO05D007963 1.5e-77 293.5 254 65.7
Lj1g0009956 Lotus japonicus HOM05D006319 ORTHO05D007963 5.6e-77 291.6 247 68.0
arahy.Tifrunner.gnm1.ann1.P5PFFU Arachis hypogaea HOM05D006319 ORTHO05D007963 1.2e-76 290.4 237 67.9
arahy.Tifrunner.gnm1.ann1.7TU5G5 Arachis hypogaea HOM05D006319 ORTHO05D007963 8.1e-76 287.7 237 67.5
arahy.Tifrunner.gnm1.ann1.4SM61H Arachis hypogaea HOM05D006319 ORTHO05D007963 1.1e-75 287.3 237 68.8
arahy.Tifrunner.gnm1.ann1.B4AV5R Arachis hypogaea HOM05D006319 ORTHO05D007963 1.4e-75 287.0 237 66.7
RcHm_v2.0_Chr2g0122611 Rosa chinensis HOM05D006319 ORTHO05D007963 4.4e-74 282.0 224 67.9
Dinv05221 Davidia involucrata HOM05D006319 ORTHO05D007963 1.3e-70 270.4 216 67.6
Prupe.4G276300 Prunus persica HOM05D006319 ORTHO05D007963 1.5e-69 266.9 227 63.9
CSS0021790 Camellia sinensis var. sinensis HOM05D006319 ORTHO05D007963 3.3e-69 265.8 236 60.2
FAN23G2801 Fragaria x ananassa HOM05D006319 ORTHO05D007963 3.3e-69 265.8 212 67.0
FvH4_1g24980 Fragaria vesca HOM05D006319 ORTHO05D007963 4.3e-69 265.4 225 65.3
CiPaw.04G079200 Carya illinoinensis HOM05D006319 ORTHO05D007963 2.8e-68 262.7 194 70.6
MELO3C023216.2 Cucumis melo HOM05D006319 ORTHO05D007963 2.8e-68 262.7 226 63.7
Potri.007G100800 Populus trichocarpa HOM05D006319 ORTHO05D007963 8.1e-68 261.2 239 62.3
CsaV3_2G019570 Cucumis sativus L. HOM05D006319 ORTHO05D007963 1.4e-67 260.4 197 67.5
QL10p041175 Quercus lobata HOM05D006319 ORTHO05D007963 1.4e-67 260.4 241 61.8
Hma1.2p1_0236F.1_g099250 Hydrangea macrophylla HOM05D006319 ORTHO05D007963 1.8e-67 260.0 235 60.9
vmacro18688 Vaccinium macrocarpon HOM05D006319 ORTHO05D007963 1.8e-67 260.0 225 61.3
ClCG02G000280 Citrullus lanatus HOM05D005757 ORTHO05D007090 2.3e-67 259.6 190 69.5
PGR102G0633 Punica granatum HOM05D006319 ORTHO05D007963 4.0e-67 258.8 230 63.0
Atru.chr4.1000 Acer truncatum HOM05D006319 ORTHO05D007963 4.4e-66 255.4 191 67.5
FAN19G2853 Fragaria x ananassa HOM05D006319 ORTHO05D007963 4.4e-66 255.4 242 60.7
GSVIVG01022331001 Vitis vinifera HOM05D006319 ORTHO05D007963 4.4e-66 255.4 193 69.4
Eucgr.H05122 Eucalyptus grandis HOM05D006319 ORTHO05D007963 5.8e-66 255.0 192 69.3
CANSAT01G1475 Cannabis sativa HOM05D006319 ORTHO05D007963 7.6e-66 254.6 219 62.6
Manes.12G159300 Manihot esculenta HOM05D006319 ORTHO05D007963 7.6e-66 254.6 219 63.9
QL10p041464 Quercus lobata HOM05D006319 ORTHO05D007963 7.6e-66 254.6 166 76.5
Actinidia16521 Actinidia chinensis HOM05D006319 ORTHO05D007963 1.7e-65 253.4 242 58.3
FAN28G2219 Fragaria x ananassa HOM05D006319 ORTHO05D007963 1.7e-65 253.4 242 59.9
Lj7A582T32 Lonicera japonica HOM05D006319 ORTHO05D007963 1.7e-65 253.4 163 77.3
Thhalv10017176m.g Eutrema salsugineum HOM05D006319 ORTHO05D007963 2.9e-65 252.7 207 66.2
Carub.0004s0957 Capsella rubella HOM05D006319 ORTHO05D007963 6.4e-65 251.5 232 60.3
Thecc.01G138200 Theobroma cacao HOM05D006319 ORTHO05D007963 8.4e-65 251.1 232 59.9
MD01G1000300 Malus domestica HOM05D006319 ORTHO05D007963 1.1e-64 250.8 200 67.0
TWI31G0926 Tripterygium wilfordii HOM05D006319 ORTHO05D007963 1.4e-64 250.4 188 70.7
Nn1g08971 Nelumbo nucifera HOM05D006319 ORTHO05D007963 1.9e-64 250.0 192 66.7
Nitab4.5_0004105g0090 Nicotiana tabacum HOM05D006319 ORTHO05D007963 2.4e-64 249.6 214 61.7
Sp4g11430 Schrenkiella parvula HOM05D006319 ORTHO05D007963 3.2e-64 249.2 189 67.7
BcaB01g03112 Brassica carinata HOM05D006319 ORTHO05D007963 4.1e-64 248.8 188 67.6
Cc02_g33910 Coffea canephora HOM05D006319 ORTHO05D007963 7.1e-64 248.1 248 58.5
Ciclev10002322m.g Citrus clementina HOM05D006319 ORTHO05D007963 9.2e-64 247.7 233 59.7
Solyc04g009420.3 Solanum lycopersicum HOM05D006319 ORTHO05D007963 9.2e-64 247.7 205 62.9
COL.COLO4_35821 Corchorus olitorius HOM05D006319 ORTHO05D007963 1.2e-63 247.3 157 75.8
CAN.G186.2 Capsicum annuum HOM05D006319 ORTHO05D007963 1.6e-63 246.9 189 66.7
Aqoxy6G00315 Aquilegia oxysepala HOM05D006319 ORTHO05D007963 2.1e-63 246.5 240 58.3
Duzib187G0662 Durio zibethinus HOM05D006319 ORTHO05D007963 2.1e-63 246.5 224 62.5
PGSC0003DMG400032538 Solanum tuberosum HOM05D006319 ORTHO05D007963 2.1e-63 246.5 237 57.0
AL4G23100 Arabidopsis lyrata HOM05D006319 ORTHO05D007963 2.7e-63 246.1 232 60.8
Gorai.011G118400 Gossypium raimondii HOM05D006319 ORTHO05D007963 4.6e-63 245.4 237 56.1
Aa31LG5G7620 Aethionema arabicum HOM05D005759 ORTHO05D007172 6.0e-63 245.0 241 58.5
Oeu011026.1 Olea europaea HOM05D006319 ORTHO05D007963 1.0e-62 244.2 232 59.9
Sopen04g004550 Solanum pennellii HOM05D006319 ORTHO05D007963 2.3e-62 243.0 221 59.3
BcaB06g28232 Brassica carinata HOM05D006319 ORTHO05D007963 3.9e-62 242.3 221 60.6
arahy.Tifrunner.gnm1.ann1.E0QW5U Arachis hypogaea HOM05D006319 ORTHO05D007963 1.5e-61 240.4 237 59.9
DCAR_009594 Daucus carota HOM05D006319 ORTHO05D007963 1.5e-61 240.4 157 74.5
Nitab4.5_0013462g0010 Nicotiana tabacum HOM05D006319 ORTHO05D007963 2.5e-61 239.6 246 54.9
Cpa.g.sc37.12 Carica papaya HOM05D006319 ORTHO05D007963 3.3e-61 239.2 256 55.1
AUR62006869 Chenopodium quinoa HOM05D006319 ORTHO05D007963 3.3e-61 239.2 213 61.5
Migut.H00824 Erythranthe guttata HOM05D006319 ORTHO05D007963 3.3e-61 239.2 188 63.3
Hund07232 Selenicereus undatus HOM05D006319 ORTHO05D007963 3.3e-61 239.2 230 57.4
BcaC01g04984 Brassica carinata HOM05D006319 ORTHO05D007963 4.3e-61 238.8 188 66.0
A03p26290 Brassica napus HOM05D006319 ORTHO05D007963 5.6e-61 238.4 188 65.4
BcaC02g08157 Brassica carinata HOM05D006319 ORTHO05D007963 7.3e-61 238.0 218 60.6
A04p21670 Brassica napus HOM05D006319 ORTHO05D007963 7.3e-61 238.0 217 60.4
C04p57790 Brassica napus HOM05D006319 ORTHO05D007963 7.3e-61 238.0 218 60.6
BraA04t17731Z Brassica rapa HOM05D006319 ORTHO05D007963 7.3e-61 238.0 219 59.8
TAR628G0979 Trochodendron aralioides HOM05D006319 ORTHO05D007963 7.3e-61 238.0 225 56.4
AT2G28605 Arabidopsis thaliana HOM05D006319 ORTHO05D007963 9.6e-61 237.7 189 67.2
C03p31420 Brassica napus HOM05D006319 ORTHO05D007963 9.6e-61 237.7 187 65.8
BolC4t27297H Brassica oleracea HOM05D006319 ORTHO05D007963 9.6e-61 237.7 218 60.1
CARHR121630 Cardamine hirsuta HOM05D006319 ORTHO05D007963 1.2e-60 237.3 219 60.3
AUR62000524 Chenopodium quinoa HOM05D006319 ORTHO05D007963 1.6e-60 236.9 213 61.0
BolC3t15489H Brassica oleracea HOM05D006319 ORTHO05D007963 2.1e-60 236.5 156 73.1
MSTRG.23490 Avicennia marina HOM05D006319 ORTHO05D007963 3.6e-60 235.7 193 64.2
BraA03t11843Z Brassica rapa HOM05D006319 ORTHO05D007963 4.7e-60 235.3 188 64.9
Zm00001eb422700 Zea mays HOM05D006319 ORTHO05D007963 5.2e-59 231.9 155 73.5
EL10Ac4g09632 Beta vulgaris HOM05D006319 ORTHO05D007963 8.9e-59 231.1 224 58.0
THA.LOC104826346 Tarenaya hassleriana HOM05D006319 ORTHO05D007963 8.9e-59 231.1 193 62.2
MBI06_g35206_MAGBIO Magnolia biondii HOM05D006319 ORTHO05D007963 9.9e-58 227.6 222 57.2
Sc02g0003550 Simmondsia chinensis HOM05D006319 ORTHO05D007963 1.3e-57 227.3 235 56.2
SGA_v2.0_scaffold273G46467 Striga asiatica HOM05D006319 ORTHO05D007963 2.2e-57 226.5 239 52.7
Ah.06g191080 Amaranthus hybridus HOM05D006319 ORTHO05D007963 4.9e-57 225.3 190 63.2
unitig_899.g15151 Utricularia gibba HOM05D006319 ORTHO05D007963 6.4e-57 224.9 159 67.9
CDE08G0565 Ceratophyllum demersum HOM05D006319 ORTHO05D007963 8.4e-57 224.6 196 61.7
TPR.G33590 Trifolium pratense HOM05D001650 ORTHO05D001592 1.4e-56 223.8 155 79.4
PSO782G1065 Papaver somniferum HOM05D006319 ORTHO05D007963 2.4e-56 223.0 173 64.2
SalBow1G4836 Salvia bowleyana HOM05D006319 ORTHO05D007963 4.2e-56 222.2 156 68.6
ECA246G1987 Erigeron canadensis HOM05D000001 ORTHO05D000003 1.6e-55 220.3 203 58.1
arahy.Tifrunner.gnm1.ann1.GQG991 Arachis hypogaea HOM05D006319 ORTHO05D007963 2.1e-55 219.9 159 72.3
Peaxi162Scf00842g00214 Petunia axillaris HOM05D006319 ORTHO05D007963 2.7e-55 219.5 137 77.4
HanXRQChr12g0378071 Helianthus annuus HOM05D006319 ORTHO05D007963 3.5e-55 219.2 219 56.2
Eucgr.H02106 Eucalyptus grandis HOM05D006319 ORTHO05D007963 6.6e-54 214.9 150 72.0
ATR0584G200 Amborella trichopoda HOM05D006319 ORTHO05D007963 1.1e-53 214.2 243 51.4
HPP92_009279 Vanilla planifolia HOM05D006319 ORTHO05D007963 1.5e-53 213.8 183 62.3
SEGI_06099 Sequoiadendron giganteum HOM05D006319 ORTHO05D007963 2.9e-49 199.5 168 58.9
SEGI_37383 Sequoiadendron giganteum HOM05D006319 ORTHO05D007963 3.8e-49 199.1 164 59.1
Rhsim01G0141500 Rhododendron simsii HOM05D006319 ORTHO05D007963 3.7e-44 182.6 185 51.4
Lsat_1_v5_gn_5_34560 Lactuca sativa HOM05D006319 ORTHO05D007963 2.0e-42 176.8 171 57.3
AagrBONN_evm.TU.Sc2ySwM_228.2950 Anthoceros agrestis HOM05D006319 ORTHO05D007963 2.4e-40 169.9 154 51.9
Potri.005G068500 Populus trichocarpa HOM05D006319 ORTHO05D007963 4.2e-40 169.1 227 48.9
Ca_16986_v3 Cicer arietinum L. HOM05D001650 ORTHO05D001592 2.7e-39 166.4 92 90.2
Pp3c8_18060 Physcomitrium patens HOM05D006319 ORTHO05D007963 4.6e-39 165.6 154 53.2
arahy.Tifrunner.gnm1.ann1.PNID9I Arachis hypogaea HOM05D006319 ORTHO05D007963 4.0e-35 152.5 152 60.5
arahy.Tifrunner.gnm1.ann1.Q7YENP Arachis hypogaea HOM05D006319 ORTHO05D007963 5.3e-35 152.1 152 60.5
TPR.G10777 Trifolium pratense HOM05D006319 ORTHO05D007963 3.4e-34 149.4 83 85.5
arahy.Tifrunner.gnm1.ann1.949H7S Arachis hypogaea HOM05D006319 ORTHO05D007963 1.4e-32 144.1 165 57.6
SMO117G0258 Selaginella moellendorffii HOM05D006319 ORTHO05D007963 3.2e-32 142.9 153 45.1
Mapoly0092s0018 Marchantia polymorpha HOM05D006319 ORTHO05D007963 5.5e-32 142.1 161 45.3
Gohir.D10G108000 Gossypium hirsutum HOM05D006319 ORTHO05D007963 2.7e-31 139.8 237 39.7
CBR_g49982 Chara braunii HOM05D006319 ORTHO05D007963 1.3e-30 137.5 146 46.6
Gohir.A10G068160 Gossypium hirsutum HOM05D006319 ORTHO05D007963 3.9e-30 136.0 236 38.6
FAN23G0464 Fragaria x ananassa HOM05D006319 ORTHO05D007963 1.9e-29 133.7 92 71.7
FAN26G1803 Fragaria x ananassa HOM05D001650 ORTHO05D001592 7.6e-26 121.7 155 49.0
Manes.12G147800 Manihot esculenta HOM05D006319 ORTHO05D007963 4.2e-24 115.9 110 62.7
Cre16.g678851 Chlamydomonas reinhardtii HOM05D006319 ORTHO05D007963 5.5e-24 115.5 153 38.6
arahy.Tifrunner.gnm1.ann1.RE08FE Arachis hypogaea HOM05D006319 ORTHO05D007963 1.8e-22 110.5 146 50.7
Os04g0434900 Oryza sativa ssp. japonica HOM05D006319 ORTHO05D007963 1.8e-22 110.5 69 75.4
AagrBONN_evm.TU.Sc2ySwM_362.516 Anthoceros agrestis HOM05D005157 ORTHO05D006652 3.0e-22 109.8 91 59.3
arahy.Tifrunner.gnm1.ann1.I50TU7 Arachis hypogaea HOM05D006319 ORTHO05D007963 3.6e-15 86.3 119 45.4
MCO01G211 Micromonas commoda HOM05D006319 ORTHO05D007963 3.6e-15 86.3 139 34.5
CDE08G0611 Ceratophyllum demersum HOM05D006319 ORTHO05D007963 9.1e-11 71.6 98 49.0
PRCOL_00004434 Prasinoderma coloniale HOM05D006319 ORTHO05D007963 4.2e-08 62.8 100 37.0
MBI11_g02539_MAGBIO Magnolia biondii HOM05D006319 ORTHO05D007963 8.8e-06 55.1 124 37.9


User provided reference genes

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