Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g056520 Pisum sativum HOM05D004183 ORTHO05D005022 0.0e+00 1804.6 910 100.0
TPR.G7801 Trifolium pratense HOM05D004183 ORTHO05D005022 0.0e+00 1560.0 913 86.6
Ca_17037_v3 Cicer arietinum L. HOM05D004183 ORTHO05D005022 0.0e+00 1545.0 912 85.1
Medtr3g098060 Medicago truncatula HOM05D004183 ORTHO05D005022 0.0e+00 1524.2 908 85.8
Lj1g0005856 Lotus japonicus HOM05D004183 ORTHO05D005022 0.0e+00 1367.1 921 77.2
Glyma.04G204500 Glycine max HOM05D004183 ORTHO05D005022 0.0e+00 1337.0 913 75.9
Lalb_Chr08g0237701 Lupinus albus HOM05D004183 ORTHO05D005022 0.0e+00 1323.1 925 73.6
Phvul.009G160200 Phaseolus vulgaris HOM05D004183 ORTHO05D005022 0.0e+00 1288.9 912 73.0
Phvul.009G192300 Phaseolus vulgaris HOM05D004183 ORTHO05D005022 0.0e+00 1194.1 915 67.8
arahy.Tifrunner.gnm1.ann1.4S33SI Arachis hypogaea HOM05D004183 ORTHO05D005022 0.0e+00 1114.0 929 65.7
arahy.Tifrunner.gnm1.ann1.RUK03S Arachis hypogaea HOM05D004183 ORTHO05D005022 0.0e+00 1110.9 929 65.4
MD10G1031900 Malus domestica HOM05D004183 ORTHO05D005022 0.0e+00 1087.8 937 60.9
RcHm_v2.0_Chr1g0321111 Rosa chinensis HOM05D004183 ORTHO05D005022 2.1e-310 1068.9 927 61.9
FvH4_7g02460 Fragaria vesca HOM05D004183 ORTHO05D005022 4.0e-309 1064.7 926 61.6
GSVIVG01000237001 Vitis vinifera HOM05D004183 ORTHO05D005022 5.2e-309 1064.3 925 61.9
Dinv04533 Davidia involucrata HOM05D004183 ORTHO05D005022 1.3e-307 1059.7 933 61.2
PGR102G1375 Punica granatum HOM05D004183 ORTHO05D005022 2.2e-307 1058.9 913 61.2
Thecc.07G183400 Theobroma cacao HOM05D004183 ORTHO05D005022 1.4e-306 1056.2 925 60.8
FAN06G5080 Fragaria x ananassa HOM05D004183 ORTHO05D005022 5.4e-306 1054.3 917 61.6
Duzib268G1261 Durio zibethinus HOM05D004183 ORTHO05D005022 7.0e-306 1053.9 929 59.8
Gorai.002G109500 Gossypium raimondii HOM05D004183 ORTHO05D005022 8.0e-302 1040.4 934 58.9
Gohir.A01G099200 Gossypium hirsutum HOM05D004183 ORTHO05D005022 1.3e-299 1033.1 932 58.4
Potri.004G080800 Populus trichocarpa HOM05D004183 ORTHO05D005022 3.7e-299 1031.6 916 60.0
FAN03G0165 Fragaria x ananassa HOM05D004183 ORTHO05D005022 1.2e-297 1026.5 926 60.7
CsaV3_2G035420 Cucumis sativus L. HOM05D004183 ORTHO05D005022 1.7e-296 1022.7 919 58.2
MELO3C019211.2 Cucumis melo HOM05D004183 ORTHO05D005022 5.1e-296 1021.1 920 58.5
Sed0016560 Sechium edule HOM05D004183 ORTHO05D005022 5.1e-296 1021.1 918 58.3
TWI75G1732 Tripterygium wilfordii HOM05D004183 ORTHO05D005022 1.6e-294 1016.1 914 59.4
Gohir.D01G083800 Gossypium hirsutum HOM05D004183 ORTHO05D005022 6.2e-294 1014.2 934 58.1
Duzib106G0093 Durio zibethinus HOM05D004183 ORTHO05D005022 1.4e-293 1013.1 921 59.1
Nn5g26963 Nelumbo nucifera HOM05D004183 ORTHO05D005022 8.9e-293 1010.4 941 57.9
Atru.chr3.3380 Acer truncatum HOM05D004183 ORTHO05D005022 3.0e-288 995.3 812 64.4
Sc24g0002700 Simmondsia chinensis HOM05D004183 ORTHO05D005022 2.2e-283 979.2 909 57.5
Prupe.2G030300 Prunus persica HOM05D004183 ORTHO05D005022 4.9e-283 978.0 932 57.7
THA.LOC104827224 Tarenaya hassleriana HOM05D004183 ORTHO05D005022 2.1e-281 972.6 930 56.8
FAN10G3177 Fragaria x ananassa HOM05D004183 ORTHO05D005022 6.6e-280 967.6 933 58.0
Sabra04G0053600 Salix brachista HOM05D004183 ORTHO05D005022 9.6e-279 963.8 991 54.7
CANSAT78G1267 Cannabis sativa HOM05D004183 ORTHO05D005022 3.4e-276 955.3 934 56.9
C09p59920 Brassica napus HOM05D004183 ORTHO05D005022 2.9e-275 952.2 924 54.1
ClCG06G014020 Citrullus lanatus HOM05D004183 ORTHO05D005022 5.4e-274 948.0 894 57.0
A10p22130 Brassica napus HOM05D004183 ORTHO05D005022 1.2e-273 946.8 918 54.5
BraA10t44272Z Brassica rapa HOM05D004183 ORTHO05D005022 1.3e-272 943.3 927 53.8
BolC9t58828H Brassica oleracea HOM05D004183 ORTHO05D005022 1.7e-272 943.0 927 53.8
CDE11G0898 Ceratophyllum demersum HOM05D004183 ORTHO05D005022 1.5e-271 939.9 930 54.0
PSO063G6994 Papaver somniferum HOM05D004183 ORTHO05D005022 2.5e-271 939.1 945 53.4
PSO782G1025 Papaver somniferum HOM05D004183 ORTHO05D005022 2.5e-271 939.1 946 53.4
EL10Ac8g19353 Beta vulgaris HOM05D004183 ORTHO05D005022 3.1e-269 932.2 923 55.0
Oeu006040.1 Olea europaea HOM05D004183 ORTHO05D005022 2.2e-267 926.0 928 53.7
Actinidia11211 Actinidia chinensis HOM05D004183 ORTHO05D005022 9.3e-266 920.6 931 54.5
Aqoxy7G00086 Aquilegia oxysepala HOM05D004183 ORTHO05D005022 3.5e-265 918.7 932 52.7
Cc03_g10770 Coffea canephora HOM05D004183 ORTHO05D005022 3.9e-264 915.2 927 53.3
CSS0046717 Camellia sinensis var. sinensis HOM05D004183 ORTHO05D005022 1.3e-262 910.2 940 54.1
BcaB08g36793 Brassica carinata HOM05D004183 ORTHO05D005022 5.3e-261 904.8 926 52.1
Haze_19348 Corylus avellana HOM05D004183 ORTHO05D005022 5.8e-260 901.4 856 58.6
Eucgr.H05055 Eucalyptus grandis HOM05D004183 ORTHO05D005022 8.4e-259 897.5 732 64.1
Carub.0006s1546 Capsella rubella HOM05D004183 ORTHO05D005022 1.4e-258 896.7 917 51.8
VMungo1309G0357 Vigna mungo HOM05D004183 ORTHO05D005022 4.6e-257 891.7 912 55.4
Rhsim03G0265100 Rhododendron simsii HOM05D004183 ORTHO05D005022 1.0e-256 890.6 958 52.2
CARHR195930 Cardamine hirsuta HOM05D004183 ORTHO05D005022 3.1e-253 879.0 922 51.2
BolC3t13450H Brassica oleracea HOM05D004183 ORTHO05D005022 6.9e-253 877.9 914 51.6
Migut.N00455 Erythranthe guttata HOM05D004183 ORTHO05D005022 1.2e-252 877.1 933 52.1
C03p09610 Brassica napus HOM05D004183 ORTHO05D005022 1.0e-251 874.0 908 51.5
ATR0810G041 Amborella trichopoda HOM05D004183 ORTHO05D005022 2.9e-251 872.5 934 49.9
Thhalv10012633m.g Eutrema salsugineum HOM05D004183 ORTHO05D005022 1.8e-245 853.2 924 50.5
HanXRQChr15g0484541 Helianthus annuus HOM05D004183 ORTHO05D005022 5.3e-245 851.7 905 51.2
BcaB01g05214 Brassica carinata HOM05D004183 ORTHO05D005022 6.9e-245 851.3 911 50.4
Manes.10G067101 Manihot esculenta HOM05D004183 ORTHO05D005022 2.0e-244 849.7 687 64.8
AL6G28330 Arabidopsis lyrata HOM05D004183 ORTHO05D005022 3.4e-244 849.0 919 50.5
COL.COLO4_19761 Corchorus olitorius HOM05D004183 ORTHO05D005022 3.8e-243 845.5 920 51.6
AT5G37130 Arabidopsis thaliana HOM05D004183 ORTHO05D005022 7.2e-242 841.3 909 50.5
Nitab4.5_0010834g0010 Nicotiana tabacum HOM05D004183 ORTHO05D005022 2.3e-240 836.3 924 50.4
Sp6g26960 Schrenkiella parvula HOM05D004183 ORTHO05D005022 6.7e-240 834.7 924 48.5
SGA_v2.0_scaffold7G03721 Striga asiatica HOM05D004183 ORTHO05D005022 3.4e-236 822.4 923 48.9
Sopen07g004700 Solanum pennellii HOM05D004183 ORTHO05D005022 7.7e-236 821.2 933 49.0
RcHm_v2.0_Chr1g0320601 Rosa chinensis HOM05D004183 ORTHO05D005022 7.2e-234 814.7 715 60.4
Aa31LG11G12400 Aethionema arabicum HOM05D004183 ORTHO05D005022 6.1e-233 811.6 954 48.2
AUR62027369 Chenopodium quinoa HOM05D004183 ORTHO05D005022 4.4e-231 805.4 1161 42.4
Solyc07g008760.4 Solanum lycopersicum HOM05D004183 ORTHO05D005022 1.5e-226 790.4 926 47.7
CAN.G333.6 Capsicum annuum HOM05D004183 ORTHO05D005022 1.9e-226 790.0 936 47.6
Lsat_1_v5_gn_3_54960 Lactuca sativa HOM05D004183 ORTHO05D005022 1.9e-226 790.0 905 48.0
vmacro06007 Vaccinium macrocarpon HOM05D004183 ORTHO05D005022 1.9e-226 790.0 1079 44.7
BcaC04g18812 Brassica carinata HOM05D004183 ORTHO05D005022 3.2e-226 789.3 925 47.2
A03p08250 Brassica napus HOM05D004183 ORTHO05D005022 1.4e-224 783.9 752 54.8
MSTRG.24596 Avicennia marina HOM05D004183 ORTHO05D005022 6.5e-219 765.0 927 47.6
Ah.09g232030 Amaranthus hybridus HOM05D004183 ORTHO05D005022 1.2e-217 760.8 750 54.3
Peaxi162Scf01600g00023 Petunia axillaris HOM05D004183 ORTHO05D005022 1.5e-215 753.8 926 47.8
Nitab4.5_0000617g0040 Nicotiana tabacum HOM05D004183 ORTHO05D005022 7.5e-215 751.5 929 46.9
Zm00001eb096590 Zea mays HOM05D004183 ORTHO05D005022 1.6e-212 743.8 915 46.9
Os07g0455100 Oryza sativa ssp. japonica HOM05D004183 ORTHO05D005022 1.1e-210 737.6 911 46.7
BraA03t10145Z Brassica rapa HOM05D004183 ORTHO05D005022 5.2e-208 728.8 914 46.7
CiPaw.15G184500 Carya illinoinensis HOM05D004183 ORTHO05D005022 1.8e-205 720.3 500 72.0
AL6G28350 Arabidopsis lyrata HOM05D004183 ORTHO05D005022 2.7e-204 716.5 843 47.7
unitig_8.g5004 Utricularia gibba HOM05D004183 ORTHO05D005022 3.0e-195 686.4 923 43.4
Ciclev10033903m.g Citrus clementina HOM05D004183 ORTHO05D005022 2.8e-193 679.9 555 64.3
AT5G17270 Arabidopsis thaliana HOM05D004183 ORTHO05D005022 3.6e-193 679.5 687 52.5
ECA246G4622 Erigeron canadensis HOM05D004183 ORTHO05D005022 3.1e-192 676.4 714 50.8
Ciclev10030817m.g Citrus clementina HOM05D004183 ORTHO05D005022 5.2e-184 649.0 919 45.3
DCAR_009033 Daucus carota HOM05D004183 ORTHO05D005022 2.0e-183 647.1 655 54.8
VMungo1309G2786 Vigna mungo HOM05D004183 ORTHO05D005022 2.4e-181 640.2 415 77.3
Ciclev10031527m.g Citrus clementina HOM05D004183 ORTHO05D005022 1.2e-172 611.3 451 68.1
VMungo1309G0778 Vigna mungo HOM05D004183 ORTHO05D005022 3.1e-168 596.7 468 68.4
Glyma.06G161100 Glycine max HOM05D004183 ORTHO05D005022 3.8e-166 589.7 467 69.2
AUR62031288 Chenopodium quinoa HOM05D004183 ORTHO05D005022 9.3e-165 585.1 481 62.0
Mapoly0026s0116 Marchantia polymorpha HOM05D004183 ORTHO05D005022 2.0e-151 540.8 974 36.0
SHI30096 Sapria himalayana HOM05D004183 ORTHO05D005022 1.4e-149 534.6 922 39.0
Pp3c1_12830 Physcomitrium patens HOM05D004183 ORTHO05D005022 1.8e-131 474.6 917 34.9
HPP92_011016 Vanilla planifolia HOM05D004183 ORTHO05D005022 1.8e-131 474.6 524 50.0
RcHm_v2.0_Chr1g0320041 Rosa chinensis HOM05D004183 ORTHO05D005022 3.3e-122 443.7 489 52.1
Ciclev10033525m.g Citrus clementina HOM05D004183 ORTHO05D005022 6.3e-121 439.5 483 51.6
Cpa.g.sc178.29 Carica papaya HOM05D004183 ORTHO05D005022 5.3e-112 409.8 397 56.7
AagrBONN_evm.TU.Sc2ySwM_344.1225 Anthoceros agrestis HOM05D004183 ORTHO05D005022 1.0e-110 405.6 514 44.0
RcHm_v2.0_Chr1g0319751 Rosa chinensis HOM05D004183 ORTHO05D005022 5.9e-103 379.8 362 56.9
RcHm_v2.0_Chr1g0320901 Rosa chinensis HOM05D004183 ORTHO05D005022 5.5e-101 373.2 329 60.2
RcHm_v2.0_Chr1g0319801 Rosa chinensis HOM05D004183 ORTHO05D005022 3.6e-100 370.5 255 71.0
MCO15G220 Micromonas commoda HOM05D004183 ORTHO05D005022 2.4e-96 357.8 1053 28.4
Hund12628 Selenicereus undatus HOM05D004183 ORTHO05D005022 7.0e-96 356.3 222 75.2
Hund27690 Selenicereus undatus HOM05D004183 ORTHO05D005022 7.0e-96 356.3 222 75.2
COL.COLO4_14587 Corchorus olitorius HOM05D004183 ORTHO05D005022 6.1e-92 343.2 472 45.8
AUR62031284 Chenopodium quinoa HOM05D004183 ORTHO05D005022 1.5e-90 338.6 461 44.0
Ciclev10033738m.g Citrus clementina HOM05D004183 ORTHO05D005022 4.4e-90 337.0 418 48.6
SEGI_18489 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 2.0e-87 328.2 304 54.6
RcHm_v2.0_Chr1g0320781 Rosa chinensis HOM05D004183 ORTHO05D005022 2.8e-84 317.8 280 62.1
RcHm_v2.0_Chr1g0319811 Rosa chinensis HOM05D004183 ORTHO05D005022 3.0e-83 314.3 393 48.9
CBR_g19343 Chara braunii HOM05D004183 ORTHO05D005022 3.4e-82 310.8 528 36.7
RcHm_v2.0_Chr1g0319861 Rosa chinensis HOM05D004183 ORTHO05D005022 5.2e-75 287.0 615 35.6
BcaB01g04945 Brassica carinata HOM05D004183 ORTHO05D005022 8.9e-75 286.2 331 48.6
Ciclev10031844m.g Citrus clementina HOM05D004183 ORTHO05D005022 1.9e-64 251.9 247 57.1
Cpa.g.sc178.30 Carica papaya HOM05D004183 ORTHO05D005022 5.4e-64 250.4 334 44.0
Ciclev10033659m.g Citrus clementina HOM05D004183 ORTHO05D005022 1.7e-62 245.4 467 36.2
Cre09.g401700 Chlamydomonas reinhardtii HOM05D004183 ORTHO05D005022 7.3e-61 240.0 503 32.2
CARHR154510 Cardamine hirsuta HOM05D004183 ORTHO05D005022 9.9e-58 229.6 247 50.2
CARHR154500 Cardamine hirsuta HOM05D004183 ORTHO05D005022 3.3e-53 214.5 247 47.0
SMO147G0329 Selaginella moellendorffii HOM05D004183 ORTHO05D005022 2.9e-49 201.4 389 34.2
CARHR154520 Cardamine hirsuta HOM05D004183 ORTHO05D005022 2.7e-47 194.9 205 47.8
PRCOL_00002789 Prasinoderma coloniale HOM05D004183 ORTHO05D005022 1.0e-46 193.0 556 27.7
Ciclev10032594m.g Citrus clementina HOM05D004183 ORTHO05D005022 7.6e-42 176.8 240 45.8
Ciclev10033120m.g Citrus clementina HOM05D004183 ORTHO05D005022 6.0e-39 167.2 107 72.0
SEGI_41562 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 7.9e-39 166.8 137 55.5
Hund12629 Selenicereus undatus HOM05D004183 ORTHO05D005022 9.0e-35 153.3 178 48.9
Hund27689 Selenicereus undatus HOM05D004183 ORTHO05D005022 9.0e-35 153.3 178 48.9
Psat5g100440 Pisum sativum HOM05D004183 ORTHO05D005022 2.9e-33 148.3 159 57.9
BcaB01g04944 Brassica carinata HOM05D004183 ORTHO05D005022 9.3e-32 143.3 187 45.5
RcHm_v2.0_Chr1g0320911 Rosa chinensis HOM05D004183 ORTHO05D005022 2.3e-30 138.7 170 48.8
RcHm_v2.0_Chr1g0319761 Rosa chinensis HOM05D004183 ORTHO05D005022 6.7e-30 137.1 170 48.2
RcHm_v2.0_Chr1g0320761 Rosa chinensis HOM05D004183 ORTHO05D005022 2.4e-27 128.6 204 40.7
COL.COLO4_14589 Corchorus olitorius HOM05D004183 ORTHO05D005022 3.4e-26 124.8 236 37.3
RcHm_v2.0_Chr1g0319771 Rosa chinensis HOM05D004183 ORTHO05D005022 7.6e-26 123.6 146 50.0
MBI08_g38580_MAGBIO Magnolia biondii HOM05D004183 ORTHO05D005022 1.6e-23 115.9 78 75.6
CBR_g19342 Chara braunii HOM05D000019 ORTHO05D000002 4.1e-19 101.3 160 35.6
HPP92_027571 Vanilla planifolia HOM05D004183 ORTHO05D005022 2.9e-17 95.1 73 58.9
BcaC08g45519 Brassica carinata HOM05D004183 ORTHO05D005022 3.2e-16 91.7 112 37.5
Cfa027322 Carpinus fangiana HOM05D004183 ORTHO05D005022 4.2e-16 91.3 704 21.6
RcHm_v2.0_Chr1g0320921 Rosa chinensis HOM05D004183 ORTHO05D005022 2.1e-15 89.0 79 58.2
SEGI_41292 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 1.8e-14 85.9 197 32.5
CDE09G0586 Ceratophyllum demersum HOM05D004183 ORTHO05D005022 4.3e-13 81.3 104 42.3
SEGI_06721 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 4.8e-12 77.8 136 39.0
CARHR185280 Cardamine hirsuta HOM05D004183 ORTHO05D005022 7.7e-10 70.5 45 68.9
C04p45760 Brassica napus HOM05D004183 ORTHO05D005022 1.4e-06 59.7 75 33.3
CARHR154530 Cardamine hirsuta HOM05D004183 ORTHO05D005022 2.3e-06 58.9 52 48.1
BolC4t26161H Brassica oleracea HOM05D004183 ORTHO05D005022 3.0e-06 58.5 75 32.0
BcaB06g27300 Brassica carinata HOM05D004183 ORTHO05D005022 5.1e-06 57.8 108 26.9


User provided reference genes

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