Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g055440 Pisum sativum HOM05D001551 ORTHO05D005859 1.1e-158 563.1 262 100.0
Ca_10874_v3 Cicer arietinum L. HOM05D001551 ORTHO05D005859 2.9e-143 511.9 262 90.1
Lj1g0018460 Lotus japonicus HOM05D001551 ORTHO05D005859 8.6e-140 500.4 261 87.0
Medtr3g098510 Medicago truncatula HOM05D001551 ORTHO05D005859 3.3e-139 498.4 260 87.3
Phvul.009G160500 Phaseolus vulgaris HOM05D001551 ORTHO05D005859 3.6e-138 495.0 261 85.4
Glyma.04G202400 Glycine max HOM05D001551 ORTHO05D005859 2.4e-137 492.3 260 85.4
Glyma.06G163100 Glycine max HOM05D001551 ORTHO05D005859 2.9e-135 485.3 265 83.0
arahy.Tifrunner.gnm1.ann1.D8JD58 Arachis hypogaea HOM05D001551 ORTHO05D005859 9.2e-134 480.3 264 83.7
arahy.Tifrunner.gnm1.ann1.Q2CTBB Arachis hypogaea HOM05D001551 ORTHO05D005859 9.2e-134 480.3 264 83.7
Lalb_Chr08g0237601 Lupinus albus HOM05D001551 ORTHO05D005859 1.2e-133 479.9 259 83.4
Thecc.03G141800 Theobroma cacao HOM05D001551 ORTHO05D005859 1.1e-129 466.8 260 79.2
TAR629G2635 Trochodendron aralioides HOM05D001551 ORTHO05D005859 5.8e-128 461.1 261 78.2
Potri.012G109800 Populus trichocarpa HOM05D001551 ORTHO05D005859 1.7e-127 459.5 258 79.5
Sabra12G0080000 Salix brachista HOM05D001551 ORTHO05D005859 2.2e-127 459.1 260 79.2
COL.COLO4_37269 Corchorus olitorius HOM05D001551 ORTHO05D005859 6.4e-127 457.6 261 77.4
Duzib205G1491 Durio zibethinus HOM05D001551 ORTHO05D005859 3.2e-126 455.3 260 77.3
Atru.chr6.1937 Acer truncatum HOM05D001551 ORTHO05D005859 7.1e-126 454.1 260 78.8
Gohir.A11G038800 Gossypium hirsutum HOM05D001551 ORTHO05D005859 1.6e-125 453.0 260 76.5
Gohir.D11G042000 Gossypium hirsutum HOM05D001551 ORTHO05D005859 3.5e-125 451.8 260 76.2
Manes.14G043800 Manihot esculenta HOM05D001551 ORTHO05D005859 7.8e-125 450.7 261 77.4
Cpa.g.sc2215.3 Carica papaya HOM05D001551 ORTHO05D005859 1.7e-124 449.5 257 78.6
Aqoxy5G03068 Aquilegia oxysepala HOM05D001551 ORTHO05D005859 3.0e-124 448.7 264 76.1
GSVIVG01008663001 Vitis vinifera HOM05D001551 ORTHO05D005859 5.1e-124 448.0 260 77.3
Gorai.007G045200 Gossypium raimondii HOM05D001551 ORTHO05D005859 6.6e-124 447.6 261 75.9
QL10p000300 Quercus lobata HOM05D001551 ORTHO05D005859 8.7e-124 447.2 253 79.1
TWI23G1313 Tripterygium wilfordii HOM05D001551 ORTHO05D005859 1.1e-123 446.8 260 78.1
Hma1.2p1_0577F.1_g182180 Hydrangea macrophylla HOM05D001551 ORTHO05D005859 4.3e-123 444.9 256 78.1
Cfa018920 Carpinus fangiana HOM05D001551 ORTHO05D005859 7.3e-123 444.1 262 76.3
Gohir.A03G055800 Gossypium hirsutum HOM05D001551 ORTHO05D005859 1.3e-122 443.4 261 75.1
Cc04_g05770 Coffea canephora HOM05D001551 ORTHO05D005859 8.1e-122 440.7 260 74.6
Solyc06g068760.3 Solanum lycopersicum HOM05D001551 ORTHO05D005859 1.8e-121 439.5 259 75.7
Cfa018698 Carpinus fangiana HOM05D001551 ORTHO05D005859 2.4e-121 439.1 262 76.0
CSS0038575 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 4.0e-121 438.3 260 75.8
CSS0002484 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 5.3e-121 438.0 260 75.4
PSO017G1738 Papaver somniferum HOM05D001551 ORTHO05D005859 5.3e-121 438.0 261 74.3
TAR371G0091 Trochodendron aralioides HOM05D001551 ORTHO05D005859 9.0e-121 437.2 261 75.5
PSO478G5149 Papaver somniferum HOM05D001551 ORTHO05D005859 2.6e-120 435.6 261 73.9
CiPaw.12G000400 Carya illinoinensis HOM05D001551 ORTHO05D005859 4.5e-120 434.9 253 75.5
Lj9C488G12 Lonicera japonica HOM05D001551 ORTHO05D005859 4.5e-120 434.9 263 74.5
Sopen06g026040 Solanum pennellii HOM05D001551 ORTHO05D005859 4.5e-120 434.9 260 75.4
MELO3C002387.2 Cucumis melo HOM05D001551 ORTHO05D005859 5.8e-120 434.5 267 74.2
MD06G1129000 Malus domestica HOM05D001551 ORTHO05D005859 5.8e-120 434.5 258 76.7
RcHm_v2.0_Chr7g0188531 Rosa chinensis HOM05D001551 ORTHO05D005859 5.8e-120 434.5 260 74.6
Gorai.003G117100 Gossypium raimondii HOM05D001551 ORTHO05D005859 9.9e-120 433.7 260 74.2
Ciclev10032408m.g Citrus clementina HOM05D001551 ORTHO05D005859 1.3e-119 433.3 271 74.2
MD14G1145900 Malus domestica HOM05D001551 ORTHO05D005859 1.3e-119 433.3 258 76.7
CsaV3_1G009930 Cucumis sativus L. HOM05D001551 ORTHO05D005859 2.2e-119 432.6 267 73.8
PGSC0003DMG400025575 Solanum tuberosum HOM05D001551 ORTHO05D005859 2.2e-119 432.6 260 75.0
Rhsim12G0181300 Rhododendron simsii HOM05D001551 ORTHO05D005859 3.8e-119 431.8 269 73.2
Prupe.5G140300 Prunus persica HOM05D001551 ORTHO05D005859 1.9e-118 429.5 258 75.2
Actinidia08913 Actinidia chinensis HOM05D001551 ORTHO05D005859 2.4e-118 429.1 260 74.2
Haze_07303 Corylus avellana HOM05D006543 ORTHO05D008308 1.6e-117 426.4 255 76.5
Manes.06G127400 Manihot esculenta HOM05D001551 ORTHO05D005859 1.6e-117 426.4 261 75.5
CAN.G1089.16 Capsicum annuum HOM05D001551 ORTHO05D005859 2.1e-117 426.0 260 74.2
BraA01t01589Z Brassica rapa HOM05D001551 ORTHO05D005859 2.7e-117 425.6 262 72.9
Nitab4.5_0007345g0100 Nicotiana tabacum HOM05D001551 ORTHO05D005859 3.5e-117 425.2 260 74.6
FAN04G0171 Fragaria x ananassa HOM05D001551 ORTHO05D005859 6.0e-117 424.5 252 75.8
A01p16340 Brassica napus HOM05D001551 ORTHO05D005859 7.9e-117 424.1 262 72.5
Sed0027340 Sechium edule HOM05D001551 ORTHO05D005859 1.0e-116 423.7 256 74.2
FvH4_5g09710 Fragaria vesca HOM05D001551 ORTHO05D005859 1.3e-116 423.3 252 75.4
FAN08G3006 Fragaria x ananassa HOM05D001551 ORTHO05D005859 1.3e-116 423.3 257 74.3
Nitab4.5_0012775g0030 Nicotiana tabacum HOM05D001551 ORTHO05D005859 1.3e-116 423.3 260 74.2
BcaNung03998 Brassica carinata HOM05D001551 ORTHO05D005859 1.8e-116 422.9 260 73.1
C01p20490 Brassica napus HOM05D001551 ORTHO05D005859 1.8e-116 422.9 262 72.1
SalBow7G1162 Salvia bowleyana HOM05D001551 ORTHO05D005859 1.8e-116 422.9 261 73.2
BcaC09g50811 Brassica carinata HOM05D001551 ORTHO05D005859 2.3e-116 422.5 261 72.0
Lsat_1_v5_gn_5_9381 Lactuca sativa HOM05D001551 ORTHO05D005859 2.3e-116 422.5 265 72.5
MSTRG.22814 Avicennia marina HOM05D001551 ORTHO05D005859 3.0e-116 422.2 265 72.5
FAN18G2118 Fragaria x ananassa HOM05D001551 ORTHO05D005859 3.9e-116 421.8 252 75.4
FAN13G0525 Fragaria x ananassa HOM05D001551 ORTHO05D005859 5.1e-116 421.4 257 73.9
Eucgr.K02189 Eucalyptus grandis HOM05D001551 ORTHO05D005859 6.7e-116 421.0 261 72.8
Actinidia36846 Actinidia chinensis HOM05D001551 ORTHO05D005859 1.9e-115 419.5 265 72.5
vmacro16761 Vaccinium macrocarpon HOM05D001551 ORTHO05D005859 1.9e-115 419.5 274 71.5
Sc04g0000180 Simmondsia chinensis HOM05D001551 ORTHO05D005859 2.5e-115 419.1 273 70.7
PGR044G0460 Punica granatum HOM05D001551 ORTHO05D005859 7.4e-115 417.5 263 70.7
BolC1t01980H Brassica oleracea HOM05D001551 ORTHO05D005859 1.3e-114 416.8 262 71.0
Migut.I00664 Erythranthe guttata HOM05D001551 ORTHO05D005859 1.6e-114 416.4 258 73.3
EL10Ac5g11272 Beta vulgaris HOM05D001551 ORTHO05D005859 2.1e-114 416.0 260 71.2
THA.LOC104808046 Tarenaya hassleriana HOM05D001551 ORTHO05D005859 3.7e-114 415.2 256 73.8
HanXRQChr05g0155371 Helianthus annuus HOM05D001551 ORTHO05D005859 8.1e-114 414.1 261 70.9
AT5G51020 Arabidopsis thaliana HOM05D001551 ORTHO05D005859 1.1e-113 413.7 260 71.9
Aa31LG3G7480 Aethionema arabicum HOM05D001551 ORTHO05D005859 1.8e-113 412.9 258 71.7
AL8G25230 Arabidopsis lyrata HOM05D001551 ORTHO05D005859 3.1e-113 412.1 260 71.5
CDE02G1325 Ceratophyllum demersum HOM05D001551 ORTHO05D005859 4.5e-112 408.3 260 69.6
CARHR257170 Cardamine hirsuta HOM05D001551 ORTHO05D005859 5.8e-112 407.9 260 71.2
Sp6g13170 Schrenkiella parvula HOM05D001551 ORTHO05D005859 5.8e-112 407.9 260 70.4
Hund10026 Selenicereus undatus HOM05D001551 ORTHO05D005859 1.3e-111 406.8 252 72.2
Gohir.D03G110700 Gossypium hirsutum HOM05D001551 ORTHO05D005859 2.2e-111 406.0 233 77.3
unitig_27.g25103 Utricularia gibba HOM05D001551 ORTHO05D005859 2.2e-111 406.0 258 71.3
Rhsim08G0198700 Rhododendron simsii HOM05D001551 ORTHO05D005859 4.9e-111 404.8 250 73.2
Carub.0008s1102 Capsella rubella HOM05D001551 ORTHO05D005859 8.4e-111 404.1 260 69.6
vmacro19115 Vaccinium macrocarpon HOM05D001551 ORTHO05D005859 8.4e-111 404.1 250 73.6
Sp7g23070 Schrenkiella parvula HOM05D001551 ORTHO05D005859 1.4e-110 403.3 262 69.8
DCAR_025640 Daucus carota HOM05D001551 ORTHO05D005859 5.5e-110 401.4 262 71.4
TWI39G0428 Tripterygium wilfordii HOM05D001551 ORTHO05D005859 1.2e-109 400.2 259 72.2
BraA03t10931Z Brassica rapa HOM05D001551 ORTHO05D005859 1.6e-109 399.8 257 69.6
AUR62043378 Chenopodium quinoa HOM05D001551 ORTHO05D005859 1.6e-109 399.8 278 65.5
Sed0019000 Sechium edule HOM05D001551 ORTHO05D005859 3.5e-109 398.7 269 68.4
AUR62032208 Chenopodium quinoa HOM05D001551 ORTHO05D005859 7.9e-109 397.5 276 65.9
Oeu051186.2 Olea europaea HOM05D001551 ORTHO05D005859 9.6e-107 390.6 282 64.9
Os11g0524300 Oryza sativa ssp. japonica HOM05D001551 ORTHO05D005859 2.8e-106 389.0 231 71.9
A03p16410 Brassica napus HOM05D001551 ORTHO05D005859 1.4e-105 386.7 282 63.5
MBI07_g13940_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 3.1e-105 385.6 296 63.5
SGA_v2.0_scaffold5G02806 Striga asiatica HOM05D001551 ORTHO05D005859 9.0e-105 384.0 262 68.3
Peaxi162Scf00207g00254 Petunia axillaris HOM05D001551 ORTHO05D005859 2.0e-104 382.9 260 69.6
THA.LOC104811554 Tarenaya hassleriana HOM05D001551 ORTHO05D005859 7.6e-104 380.9 230 72.2
Zm00001eb170550 Zea mays HOM05D001551 ORTHO05D005859 8.4e-103 377.5 231 69.3
BcaC01g06112 Brassica carinata HOM05D001551 ORTHO05D005859 9.3e-102 374.0 260 67.3
TPR.G16934 Trifolium pratense HOM05D001551 ORTHO05D005859 9.3e-102 374.0 193 86.0
SGA_v2.0_scaffold37G14673 Striga asiatica HOM05D001551 ORTHO05D005859 1.2e-101 373.6 214 77.1
ClCG03G004050 Citrullus lanatus HOM05D001551 ORTHO05D005859 2.7e-101 372.5 224 75.0
Dinv13710 Davidia involucrata HOM05D001551 ORTHO05D005859 6.0e-101 371.3 210 78.1
Actinidia18288 Actinidia chinensis HOM05D001551 ORTHO05D005859 3.9e-100 368.6 235 71.5
AagrBONN_evm.TU.Sc2ySwM_368.1985 Anthoceros agrestis HOM05D001551 ORTHO05D005859 1.8e-97 359.8 228 64.9
Thhalv10014437m.g Eutrema salsugineum HOM05D001551 ORTHO05D005859 5.3e-97 358.2 221 73.3
Mapoly0002s0145 Marchantia polymorpha HOM05D001551 ORTHO05D005859 1.0e-95 354.0 231 64.9
Nn4g22121 Nelumbo nucifera HOM05D001551 ORTHO05D005859 2.7e-93 345.9 264 62.5
Pp3c6_23000 Physcomitrium patens HOM05D001551 ORTHO05D005859 1.8e-92 343.2 218 66.5
SMO118G0459 Selaginella moellendorffii HOM05D001551 ORTHO05D005859 3.9e-92 342.0 217 65.4
Pp3c5_10130 Physcomitrium patens HOM05D001551 ORTHO05D005859 1.5e-91 340.1 221 63.8
Actinidia25511 Actinidia chinensis HOM05D001551 ORTHO05D005859 2.8e-90 335.9 221 70.6
Haze_07088 Corylus avellana HOM05D001551 ORTHO05D005859 3.4e-88 328.9 231 66.2
AUR62011939 Chenopodium quinoa HOM05D001551 ORTHO05D005859 4.5e-88 328.6 279 56.3
Hund02515 Selenicereus undatus HOM05D001551 ORTHO05D005859 2.1e-85 319.7 274 58.4
AUR62043863 Chenopodium quinoa HOM05D001551 ORTHO05D005859 2.0e-83 313.2 325 49.8
Nn3g16260 Nelumbo nucifera HOM05D001551 ORTHO05D005859 2.8e-82 309.3 164 82.9
SEGI_34423 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 7.2e-78 294.7 198 62.6
CBR_g30803 Chara braunii HOM05D001551 ORTHO05D005859 2.1e-77 293.1 215 57.7
Dinv23235 Davidia involucrata HOM05D001551 ORTHO05D005859 1.8e-76 290.0 169 76.9
Duzib084G0881 Durio zibethinus HOM05D001551 ORTHO05D005859 1.8e-76 290.0 162 77.2
MBI07_g35983_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 1.6e-64 250.4 163 71.2
MBI07_g48061_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 2.5e-62 243.0 137 78.8
Thhalv10025970m.g Eutrema salsugineum HOM05D001551 ORTHO05D005859 3.2e-62 242.7 145 75.2
HPP92_009738 Vanilla planifolia HOM05D001551 ORTHO05D005859 1.5e-59 233.8 205 58.5
CDE06G0746 Ceratophyllum demersum HOM05D001551 ORTHO05D005859 4.4e-59 232.3 214 55.6
Sc04g0000140 Simmondsia chinensis HOM05D001551 ORTHO05D005859 1.4e-49 200.7 122 74.6
Sc04g0000130 Simmondsia chinensis HOM05D001551 ORTHO05D005859 5.0e-47 192.2 116 71.6
Psat3g122800 Pisum sativum HOM05D001551 ORTHO05D005859 2.2e-34 150.2 82 90.2
CSS0038626 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 1.5e-30 137.5 105 64.8
Psat7g261640 Pisum sativum HOM05D001551 ORTHO05D005859 5.6e-30 135.6 92 77.2
CSS0016811 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 4.4e-27 125.9 81 74.1
SEGI_13041 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 3.5e-24 116.3 68 67.6
FvH4_6g04500 Fragaria vesca HOM05D001551 ORTHO05D005859 5.1e-23 112.5 72 72.2
ECA246G1749 Erigeron canadensis HOM05D001551 ORTHO05D005859 1.2e-21 107.8 65 73.8
Pp3c16_270 Physcomitrium patens HOM05D001551 ORTHO05D005859 6.8e-20 102.1 65 63.1
HanXRQChr05g0130591 Helianthus annuus HOM05D001551 ORTHO05D005859 7.1e-17 92.0 54 70.4
Psat5g306440 Pisum sativum HOM05D001551 ORTHO05D006558 7.1e-17 92.0 70 68.6
Cfa013473 Carpinus fangiana HOM05D001551 ORTHO05D005859 1.2e-16 91.3 69 66.7
BcaC01g06064 Brassica carinata HOM05D001551 ORTHO05D005859 3.3e-14 83.2 85 50.6
C03p19300 Brassica napus HOM05D001551 ORTHO05D042173 2.8e-13 80.1 43 74.4
Sabra15G0128500 Salix brachista HOM05D001551 ORTHO05D003058 4.8e-13 79.3 90 43.3
Duzib084G0670 Durio zibethinus HOM05D001551 ORTHO05D005859 1.3e-10 71.2 50 62.0
Ah.11g046990 Amaranthus hybridus HOM05D001551 ORTHO05D005859 2.9e-10 70.1 48 64.6
Ah.02g114530 Amaranthus hybridus HOM05D001551 ORTHO05D005859 7.1e-09 65.5 50 58.0
SEGI_34327 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 1.3e-07 61.2 67 46.3


User provided reference genes

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