Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g050320 Pisum sativum HOM05D004672 ORTHO05D005732 1.0e-165 586.6 297 100.0
Psat6g214080 Pisum sativum HOM05D001701 ORTHO05D007490 4.5e-44 182.6 148 70.9
Psat1g212840 Pisum sativum HOM05D004672 ORTHO05D005732 1.7e-38 164.1 98 85.7
Ca_00181_v3 Cicer arietinum L. HOM05D004672 ORTHO05D005732 1.4e-37 161.0 98 83.7
Medtr2g010110 Medicago truncatula HOM05D004672 ORTHO05D005732 7.0e-37 158.7 91 84.6
Glyma.15G060100 Glycine max HOM05D004672 ORTHO05D005732 7.7e-36 155.2 91 83.5
Glyma.13G254600 Glycine max HOM05D004672 ORTHO05D005732 2.5e-34 150.2 91 81.3
arahy.Tifrunner.gnm1.ann1.GE1IDC Arachis hypogaea HOM05D004672 ORTHO05D005732 4.2e-34 149.4 104 73.1
Lj6g0005540 Lotus japonicus HOM05D004672 ORTHO05D005732 7.2e-34 148.7 87 83.9
Lalb_Chr18g0060301 Lupinus albus HOM05D004672 ORTHO05D005732 9.4e-34 148.3 98 77.6
TPR.G32637 Trifolium pratense HOM05D004672 ORTHO05D005732 9.4e-34 148.3 90 81.1
VMungo0540G1852 Vigna mungo HOM05D004672 ORTHO05D005732 1.2e-33 147.9 104 73.1
Psat7g234000 Pisum sativum HOM05D001701 ORTHO05D001628 1.6e-33 147.5 85 87.1
Phvul.006G199700 Phaseolus vulgaris HOM05D004672 ORTHO05D005732 2.7e-33 146.7 85 84.7
arahy.Tifrunner.gnm1.ann1.BVLY6P Arachis hypogaea HOM05D004672 ORTHO05D005732 3.6e-33 146.4 104 72.1
Sed0001753 Sechium edule HOM05D004672 ORTHO05D005732 1.4e-32 144.4 101 71.3
Psat3g036120 Pisum sativum HOM05D001701 ORTHO05D001628 1.8e-32 144.1 85 89.4
Dinv08968 Davidia involucrata HOM05D004672 ORTHO05D005732 5.7e-31 139.0 105 65.7
Prupe.8G075100 Prunus persica HOM05D004672 ORTHO05D005732 5.7e-31 139.0 92 72.8
Cfa004803 Carpinus fangiana HOM05D004672 ORTHO05D005732 9.8e-31 138.3 92 72.8
Hma1.2p1_0908F.1_g235670 Hydrangea macrophylla HOM05D004672 ORTHO05D005732 9.8e-31 138.3 105 63.8
QL11p026607 Quercus lobata HOM05D004672 ORTHO05D005732 9.8e-31 138.3 90 74.4
Atru.chr6.1353 Acer truncatum HOM05D004672 ORTHO05D005732 1.3e-30 137.9 91 74.7
ClCG09G016480 Citrullus lanatus HOM05D004672 ORTHO05D005732 1.3e-30 137.9 98 70.4
Ciclev10027696m.g Citrus clementina HOM05D004672 ORTHO05D005732 1.3e-30 137.9 99 70.7
MELO3C018559.2 Cucumis melo HOM05D004672 ORTHO05D005732 1.3e-30 137.9 98 70.4
CSS0000676 Camellia sinensis var. sinensis HOM05D004672 ORTHO05D005732 2.2e-30 137.1 105 65.7
CiPaw.06G160900 Carya illinoinensis HOM05D004672 ORTHO05D005732 2.2e-30 137.1 105 66.7
ECA240G2418 Erigeron canadensis HOM05D004672 ORTHO05D005732 4.8e-30 136.0 105 62.9
RcHm_v2.0_Chr6g0269481 Rosa chinensis HOM05D004672 ORTHO05D005732 4.8e-30 136.0 92 71.7
Actinidia00323 Actinidia chinensis HOM05D004672 ORTHO05D005732 6.3e-30 135.6 92 69.6
Hund06479 Selenicereus undatus HOM05D004672 ORTHO05D005732 6.3e-30 135.6 86 72.1
CANSAT54G0310 Cannabis sativa HOM05D004672 ORTHO05D005732 1.1e-29 134.8 92 69.6
Haze_10395 Corylus avellana HOM05D004672 ORTHO05D005732 1.1e-29 134.8 99 70.7
CSS0013617 Camellia sinensis var. sinensis HOM05D004672 ORTHO05D005732 2.4e-29 133.7 105 62.9
CsaV3_7G007430 Cucumis sativus L. HOM05D004672 ORTHO05D005732 3.1e-29 133.3 92 69.6
FvH4_2g11160 Fragaria vesca HOM05D004672 ORTHO05D005732 5.4e-29 132.5 92 70.7
FAN15G2368 Fragaria x ananassa HOM05D004672 ORTHO05D005732 5.4e-29 132.5 92 70.7
FAN20G2876 Fragaria x ananassa HOM05D004672 ORTHO05D005732 5.4e-29 132.5 92 70.7
FAN24G1132 Fragaria x ananassa HOM05D004672 ORTHO05D005732 5.4e-29 132.5 92 70.7
FAN27G2619 Fragaria x ananassa HOM05D004672 ORTHO05D005732 5.4e-29 132.5 92 70.7
TWI59G0488 Tripterygium wilfordii HOM05D004672 ORTHO05D005732 5.4e-29 132.5 91 69.2
Dinv16031 Davidia involucrata HOM05D004672 ORTHO05D005732 7.0e-29 132.1 105 63.8
Sed0014665 Sechium edule HOM05D004672 ORTHO05D005732 7.0e-29 132.1 98 67.3
Thecc.02G125000 Theobroma cacao HOM05D004672 ORTHO05D005732 7.0e-29 132.1 91 72.5
Gohir.A13G049500 Gossypium hirsutum HOM05D004672 ORTHO05D005732 9.1e-29 131.7 91 71.4
Gohir.D13G048000 Gossypium hirsutum HOM05D004672 ORTHO05D005732 9.1e-29 131.7 91 71.4
Gorai.013G053600 Gossypium raimondii HOM05D004672 ORTHO05D005732 9.1e-29 131.7 91 71.4
Potri.001G285600 Populus trichocarpa HOM05D004672 ORTHO05D005732 9.1e-29 131.7 100 64.0
MSTRG.16633 Avicennia marina HOM05D004672 ORTHO05D005732 1.2e-28 131.3 101 64.4
Sabra16G0178000 Salix brachista HOM05D004672 ORTHO05D005732 1.2e-28 131.3 100 64.0
HanXRQChr03g0071051 Helianthus annuus HOM05D004672 ORTHO05D005732 1.6e-28 131.0 104 63.5
Lj9C342T12 Lonicera japonica HOM05D004672 ORTHO05D005732 2.7e-28 130.2 109 61.5
Psat0s7528g0040 Pisum sativum HOM05D003881 ORTHO05D004343 2.7e-28 130.2 75 85.3
Psat1g034120 Pisum sativum HOM05D003881 ORTHO05D004343 2.7e-28 130.2 75 85.3
vmacro19391 Vaccinium macrocarpon HOM05D004672 ORTHO05D005732 2.7e-28 130.2 99 65.7
Duzib132G0551 Durio zibethinus HOM05D004672 ORTHO05D005732 4.5e-28 129.4 91 69.2
Actinidia02411 Actinidia chinensis HOM05D004672 ORTHO05D005732 7.7e-28 128.6 92 65.2
Sabra09G0061900 Salix brachista HOM05D004672 ORTHO05D005732 7.7e-28 128.6 99 62.6
SGA_v2.0_scaffold83G26394 Striga asiatica HOM05D004672 ORTHO05D005732 7.7e-28 128.6 98 65.3
DCAR_021895 Daucus carota HOM05D004672 ORTHO05D005732 1.0e-27 128.3 91 65.9
MD10G1056900 Malus domestica HOM05D004672 ORTHO05D005732 1.0e-27 128.3 92 67.4
Manes.10G094200 Manihot esculenta HOM05D004672 ORTHO05D005732 1.0e-27 128.3 99 66.7
TAR628G0793 Trochodendron aralioides HOM05D004672 ORTHO05D005732 1.0e-27 128.3 90 71.1
EL10Ac9g22127 Beta vulgaris HOM05D004672 ORTHO05D005732 1.3e-27 127.9 90 70.0
PGR142G1680 Punica granatum HOM05D004672 ORTHO05D005732 2.3e-27 127.1 91 64.8
CAN.G504.43 Capsicum annuum HOM05D004672 ORTHO05D005732 2.9e-27 126.7 92 66.3
Eucgr.I02582 Eucalyptus grandis HOM05D004672 ORTHO05D005732 2.9e-27 126.7 83 72.3
Aqoxy6G00637 Aquilegia oxysepala HOM05D004672 ORTHO05D005732 3.8e-27 126.3 98 64.3
MD05G1049800 Malus domestica HOM05D004672 ORTHO05D005732 3.8e-27 126.3 92 66.3
Sopen01g048630 Solanum pennellii HOM05D004672 ORTHO05D005732 3.8e-27 126.3 92 65.2
Ah.01g024170 Amaranthus hybridus HOM05D004672 ORTHO05D005732 5.0e-27 125.9 91 67.0
Solyc01g106220.4 Solanum lycopersicum HOM05D004672 ORTHO05D005732 5.0e-27 125.9 92 65.2
Nn1g07286 Nelumbo nucifera HOM05D004672 ORTHO05D005732 6.6e-27 125.6 104 59.6
Potri.009G079900 Populus trichocarpa HOM05D004672 ORTHO05D005732 6.6e-27 125.6 100 61.0
AUR62030919 Chenopodium quinoa HOM05D004672 ORTHO05D005732 1.1e-26 124.8 91 68.1
Nitab4.5_0005163g0020 Nicotiana tabacum HOM05D004672 ORTHO05D005732 1.1e-26 124.8 100 63.0
Cc02_g20590 Coffea canephora HOM05D004672 ORTHO05D005732 1.5e-26 124.4 104 61.5
Nitab4.5_0002335g0010 Nicotiana tabacum HOM05D004672 ORTHO05D005732 1.5e-26 124.4 100 63.0
AUR62027080 Chenopodium quinoa HOM05D004672 ORTHO05D005732 1.9e-26 124.0 91 68.1
Medtr7g103840 Medicago truncatula HOM05D001701 ORTHO05D001628 2.5e-26 123.6 75 84.0
SalBow6G5524 Salvia bowleyana HOM05D004672 ORTHO05D005732 2.5e-26 123.6 101 63.4
PGSC0003DMG400010676 Solanum tuberosum HOM05D004672 ORTHO05D005732 2.5e-26 123.6 92 65.2
A06p31080 Brassica napus HOM05D004672 ORTHO05D005732 3.3e-26 123.2 84 71.4
BraA06t26051Z Brassica rapa HOM05D004672 ORTHO05D005732 3.3e-26 123.2 84 71.4
AL8G41790 Arabidopsis lyrata HOM05D004672 ORTHO05D005732 4.2e-26 122.9 90 67.8
Lsat_1_v5_gn_9_113661 Lactuca sativa HOM05D004672 ORTHO05D005732 4.2e-26 122.9 97 63.9
Lsat_1_v5_gn_9_113760 Lactuca sativa HOM05D004672 ORTHO05D005732 4.2e-26 122.9 97 63.9
GSVIVG01038520001 Vitis vinifera HOM05D004672 ORTHO05D005732 4.2e-26 122.9 83 69.9
Aa31LG1G17480 Aethionema arabicum HOM05D004672 ORTHO05D005732 5.5e-26 122.5 90 67.8
Thhalv10003522m.g Eutrema salsugineum HOM05D004672 ORTHO05D005732 7.2e-26 122.1 84 71.4
MBI16_g10454_MAGBIO Magnolia biondii HOM05D004672 ORTHO05D005732 7.2e-26 122.1 104 60.6
Peaxi162Scf00016g03257 Petunia axillaris HOM05D004672 ORTHO05D005732 7.2e-26 122.1 105 58.1
Duzib132G1253 Durio zibethinus HOM05D004672 ORTHO05D005732 9.5e-26 121.7 97 63.9
CARHR278390 Cardamine hirsuta HOM05D004672 ORTHO05D005732 2.1e-25 120.6 90 66.7
Migut.B00522 Erythranthe guttata HOM05D004672 ORTHO05D005732 2.1e-25 120.6 104 58.7
Sp2g27510 Schrenkiella parvula HOM05D004672 ORTHO05D005732 2.1e-25 120.6 90 65.6
AT5G64420 Arabidopsis thaliana HOM05D004672 ORTHO05D005732 2.8e-25 120.2 90 65.6
C03p61860 Brassica napus HOM05D004672 ORTHO05D005732 2.8e-25 120.2 84 70.2
BolC3t18446H Brassica oleracea HOM05D004672 ORTHO05D005732 2.8e-25 120.2 84 70.2
Carub.0008s2522 Capsella rubella HOM05D004672 ORTHO05D005732 2.8e-25 120.2 90 66.7
Sc06g0005830 Simmondsia chinensis HOM05D004672 ORTHO05D005732 2.8e-25 120.2 87 64.4
PSO017G1610 Papaver somniferum HOM05D004672 ORTHO05D005732 6.1e-25 119.0 92 63.0
AL8G35270 Arabidopsis lyrata HOM05D004672 ORTHO05D005732 8.0e-25 118.6 90 65.6
PSO478G3191 Papaver somniferum HOM05D004672 ORTHO05D005732 1.0e-24 118.2 92 64.1
unitig_744.g24197 Utricularia gibba HOM05D004672 ORTHO05D005732 1.0e-24 118.2 94 61.7
Ca_08966_v3 Cicer arietinum L. HOM05D001701 ORTHO05D001628 1.8e-24 117.5 90 68.9
Nitab4.5_0005163g0030 Nicotiana tabacum HOM05D004672 ORTHO05D005732 2.3e-24 117.1 105 54.3
TPR.G10248 Trifolium pratense HOM05D001701 ORTHO05D001628 2.3e-24 117.1 76 81.6
THA.LOC104799703 Tarenaya hassleriana HOM05D004672 ORTHO05D005732 3.0e-24 116.7 90 64.4
BcaC03g18261 Brassica carinata HOM05D004672 ORTHO05D005732 8.9e-24 115.2 83 66.3
CDE05G2025 Ceratophyllum demersum HOM05D004672 ORTHO05D005732 9.8e-23 111.7 82 62.2
Psat7g029320 Pisum sativum HOM05D006267 ORTHO05D007490 1.7e-22 110.9 164 50.0
Oeu033795.2 Olea europaea HOM05D004672 ORTHO05D005732 3.7e-22 109.8 92 55.4
Oeu042393.4 Olea europaea HOM05D004672 ORTHO05D005732 4.9e-22 109.4 92 54.3
Peaxi162Scf00016g03462 Petunia axillaris HOM05D004672 ORTHO05D005732 2.4e-21 107.1 81 63.0
HPP92_024099 Vanilla planifolia HOM05D004672 ORTHO05D005732 3.5e-20 103.2 104 51.0
SHI04921 Sapria himalayana HOM05D004672 ORTHO05D005732 1.0e-19 101.7 84 54.8
THA.LOC104818461 Tarenaya hassleriana HOM05D004672 ORTHO05D005732 2.9e-19 100.1 84 58.3
Zm00001eb231630 Zea mays HOM05D004672 ORTHO05D005732 2.5e-18 97.1 102 51.0
BcaB07g29742 Brassica carinata HOM05D004672 ORTHO05D005732 1.4e-16 91.3 65 66.2
Medtr8g098995 Medicago truncatula HOM05D006267 ORTHO05D007490 1.8e-16 90.9 78 65.4
Os02g0135700 Oryza sativa ssp. japonica HOM05D004672 ORTHO05D005732 8.9e-16 88.6 104 45.2
SEGI_31749 Sequoiadendron giganteum HOM05D004672 ORTHO05D005732 2.0e-15 87.4 83 51.8
Lalb_Chr01g0018321 Lupinus albus HOM05D001701 ORTHO05D001628 9.8e-15 85.1 75 56.0
TPR.G12935 Trifolium pratense HOM05D006267 ORTHO05D007490 3.7e-14 83.2 156 42.3
Lj1g0019790 Lotus japonicus HOM05D001701 ORTHO05D001628 3.2e-13 80.1 91 52.7
Lalb_Chr05g0224451 Lupinus albus HOM05D006267 ORTHO05D007490 4.1e-13 79.7 108 47.2
ATR0800G038 Amborella trichopoda HOM05D004672 ORTHO05D005732 2.0e-12 77.4 83 48.2
arahy.Tifrunner.gnm1.ann1.H8PMIE Arachis hypogaea HOM05D001701 ORTHO05D001628 2.0e-12 77.4 73 54.8
Lj4g0011337 Lotus japonicus HOM05D006267 ORTHO05D007490 2.0e-12 77.4 197 36.5
Glyma.03G191200 Glycine max HOM05D001701 ORTHO05D001628 4.6e-12 76.3 75 54.7
arahy.Tifrunner.gnm1.ann1.GMIT0H Arachis hypogaea HOM05D001701 ORTHO05D001628 6.0e-12 75.9 71 54.9
Psat6g144840 Pisum sativum HOM05D000230 ORTHO05D016850 6.0e-12 75.9 40 95.0
VMungo0251G1048 Vigna mungo HOM05D006267 ORTHO05D007490 6.0e-12 75.9 74 60.8
Lalb_Chr09g0333071 Lupinus albus HOM05D006267 ORTHO05D007490 1.0e-11 75.1 182 36.8
Medtr2g086320 Medicago truncatula HOM05D004672 ORTHO05D005732 1.0e-11 75.1 62 64.5
Phvul.002G293500 Phaseolus vulgaris HOM05D006267 ORTHO05D007490 1.0e-11 75.1 93 50.5
Phvul.001G186700 Phaseolus vulgaris HOM05D001701 ORTHO05D001628 1.3e-11 74.7 75 53.3
vmacro06228 Vaccinium macrocarpon HOM05D004672 ORTHO05D005732 1.7e-11 74.3 120 40.8
Glyma.08G018700 Glycine max HOM05D006267 ORTHO05D007490 3.0e-11 73.6 82 54.9
Glyma.05G212200 Glycine max HOM05D006267 ORTHO05D007490 8.6e-11 72.0 66 62.1
Glyma.19G191900 Glycine max HOM05D001701 ORTHO05D001628 1.1e-10 71.6 75 52.0
Ca_10954_v3 Cicer arietinum L. HOM05D006267 ORTHO05D007490 1.9e-10 70.9 129 45.7
Psat6g134640 Pisum sativum HOM05D001175 ORTHO05D002146 1.9e-10 70.9 40 85.0
VMungo1383G2052 Vigna mungo HOM05D001701 ORTHO05D001628 2.5e-10 70.5 75 52.0
Glyma.10G066300 Glycine max HOM05D001701 ORTHO05D001628 7.3e-10 68.9 68 54.4
Nitab4.5_0001405g0040 Nicotiana tabacum HOM05D004672 ORTHO05D005732 1.6e-09 67.8 53 62.3
Glyma.19G191800 Glycine max HOM05D001701 ORTHO05D001628 8.0e-09 65.5 75 49.3
Lj5g0024745 Lotus japonicus HOM05D001701 ORTHO05D001628 8.0e-09 65.5 68 51.5
Psat3g136440 Pisum sativum HOM05D002395 ORTHO05D023702 7.5e-07 58.9 52 57.7
MD14G1113000 Malus domestica HOM05D006267 ORTHO05D007490 2.9e-06 57.0 104 42.3


User provided reference genes

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