Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g050280 Pisum sativum HOM05D003707 ORTHO05D004309 2.4e-161 572.4 349 100.0
Medtr3g099600 Medicago truncatula HOM05D003707 ORTHO05D004309 2.8e-109 399.4 351 72.9
TPR.G6353 Trifolium pratense HOM05D003707 ORTHO05D004309 1.2e-107 394.0 349 72.5
Ca_16033_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 2.0e-104 383.3 364 62.4
Glyma.06G100100 Glycine max HOM05D003707 ORTHO05D004309 4.6e-88 328.9 316 59.8
arahy.Tifrunner.gnm1.ann1.NXYL2L Arachis hypogaea HOM05D003707 ORTHO05D004309 3.8e-82 309.3 314 57.3
arahy.Tifrunner.gnm1.ann1.K5H584 Arachis hypogaea HOM05D003707 ORTHO05D004309 1.1e-81 307.8 314 57.3
Lj1g0011682 Lotus japonicus HOM05D003707 ORTHO05D004309 5.1e-79 298.9 361 51.2
VMungo1309G1468 Vigna mungo HOM05D003707 ORTHO05D004309 1.3e-74 284.3 315 53.7
Glyma.02G209600 Glycine max HOM05D003707 ORTHO05D004309 9.3e-73 278.1 305 54.4
Lalb_Chr11g0065241 Lupinus albus HOM05D003707 ORTHO05D004309 2.5e-70 270.0 272 58.1
Duzib093G2197 Durio zibethinus HOM05D003707 ORTHO05D004309 3.3e-70 269.6 338 50.0
Ca_16005_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 5.6e-70 268.9 335 51.6
Cfa017898 Carpinus fangiana HOM05D003707 ORTHO05D004309 7.4e-70 268.5 310 52.9
GSVIVG01009092001 Vitis vinifera HOM05D003707 ORTHO05D004309 9.6e-70 268.1 318 50.6
Phvul.009G033700 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 1.8e-68 263.8 306 52.9
CSS0029872 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 3.1e-68 263.1 315 49.2
Glyma.14G177700 Glycine max HOM05D003707 ORTHO05D004309 5.3e-68 262.3 304 52.3
QL02p002269 Quercus lobata HOM05D003707 ORTHO05D004309 9.0e-68 261.5 315 50.2
Duzib041G0396 Durio zibethinus HOM05D003707 ORTHO05D004309 1.5e-67 260.8 338 49.1
Glyma.04G098500 Glycine max HOM05D003707 ORTHO05D004309 1.7e-66 257.3 221 63.3
Thecc.08G101000 Theobroma cacao HOM05D003707 ORTHO05D004309 2.9e-66 256.5 340 47.9
MD08G1190000 Malus domestica HOM05D003707 ORTHO05D004309 6.4e-66 255.4 317 50.5
Lj4C96G4 Lonicera japonica HOM05D003707 ORTHO05D004309 8.4e-66 255.0 318 47.2
Hma1.2p1_1180F.1_g264680 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 2.4e-65 253.4 320 48.8
CiPaw.16G032500 Carya illinoinensis HOM05D003707 ORTHO05D004309 1.2e-64 251.1 315 48.3
Gohir.A06G032900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 1.2e-64 251.1 336 47.0
MD15G1377500 Malus domestica HOM05D003707 ORTHO05D004309 1.2e-64 251.1 317 49.5
Lalb_Chr04g0253021 Lupinus albus HOM05D003707 ORTHO05D004309 6.0e-64 248.8 339 48.7
Haze_18252 Corylus avellana HOM05D003707 ORTHO05D004309 1.3e-63 247.7 310 50.3
TWI56G1284 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 3.0e-63 246.5 339 45.7
Nitab4.5_0003374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 3.9e-63 246.1 341 46.6
Potri.002G101400 Populus trichocarpa HOM05D003707 ORTHO05D004309 3.3e-62 243.0 347 46.1
VMungo0647G1227 Vigna mungo HOM05D003707 ORTHO05D004309 4.3e-62 242.7 310 48.7
Gorai.010G037300 Gossypium raimondii HOM05D003707 ORTHO05D004309 2.8e-61 240.0 338 45.3
Gohir.A05G223200 Gossypium hirsutum HOM05D003707 ORTHO05D004309 3.7e-61 239.6 332 46.4
Prupe.1G524200 Prunus persica HOM05D003707 ORTHO05D004309 3.7e-61 239.6 338 46.2
Sopen04g029730 Solanum pennellii HOM05D003707 ORTHO05D004309 1.1e-60 238.0 341 44.6
Gohir.D06G033800 Gossypium hirsutum HOM05D003707 ORTHO05D004309 1.4e-60 237.7 338 45.0
vmacro11166 Vaccinium macrocarpon HOM05D003707 ORTHO05D004309 1.4e-60 237.7 316 45.9
Rhsim06G0077200 Rhododendron simsii HOM05D003707 ORTHO05D004309 1.8e-60 237.3 369 41.7
CiPaw.15G045200 Carya illinoinensis HOM05D003707 ORTHO05D004309 3.1e-60 236.5 320 46.6
Solyc04g074760.3 Solanum lycopersicum HOM05D003707 ORTHO05D004309 6.9e-60 235.3 341 44.6
Cpa.g.sc36.188 Carica papaya HOM05D003707 ORTHO05D004309 1.5e-59 234.2 340 42.6
Gorai.009G233400 Gossypium raimondii HOM05D003707 ORTHO05D004309 2.0e-59 233.8 332 45.5
Nitab4.5_0009374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 3.4e-59 233.0 339 45.7
EL10Ac1g01138 Beta vulgaris HOM05D003707 ORTHO05D004309 4.5e-59 232.6 316 45.9
Gohir.D05G225900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 4.5e-59 232.6 332 45.5
Manes.18G063100 Manihot esculenta HOM05D003707 ORTHO05D004309 5.8e-59 232.3 340 46.2
FvH4_5g36300 Fragaria vesca HOM05D003707 ORTHO05D004309 7.6e-59 231.9 336 44.3
CAN.G1173.6 Capsicum annuum HOM05D003707 ORTHO05D004309 1.0e-58 231.5 340 43.2
Atru.chr13.1112 Acer truncatum HOM05D003707 ORTHO05D004309 2.2e-58 230.3 322 46.9
Hma1.2p1_1568F.1_g291110 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 3.8e-58 229.6 310 46.1
Phvul.008G177200 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 6.5e-58 228.8 329 45.6
PGSC0003DMG400030841 Solanum tuberosum HOM05D003707 ORTHO05D004309 6.5e-58 228.8 305 46.6
Cc00_g22270 Coffea canephora HOM05D003707 ORTHO05D004309 8.4e-58 228.4 341 42.8
Psat2g069400 Pisum sativum HOM05D003707 ORTHO05D004309 8.4e-58 228.4 330 47.0
FAN04G1986 Fragaria x ananassa HOM05D003707 ORTHO05D004309 1.4e-57 227.6 336 44.0
Actinidia10349 Actinidia chinensis HOM05D003707 ORTHO05D004309 7.1e-57 225.3 338 43.5
Actinidia29599 Actinidia chinensis HOM05D003707 ORTHO05D004309 2.1e-56 223.8 338 42.3
Oeu024817.1 Olea europaea HOM05D003707 ORTHO05D004309 2.1e-56 223.8 319 45.5
TPR.G12497 Trifolium pratense HOM05D003707 ORTHO05D004309 2.1e-56 223.8 376 42.8
Ciclev10001810m.g Citrus clementina HOM05D003707 ORTHO05D004309 6.0e-56 222.2 339 44.0
RcHm_v2.0_Chr7g0238321 Rosa chinensis HOM05D003707 ORTHO05D004309 6.0e-56 222.2 322 46.0
Eucgr.F00380 Eucalyptus grandis HOM05D003707 ORTHO05D004309 6.7e-55 218.8 317 44.5
Sabra02G0079500 Salix brachista HOM05D003707 ORTHO05D004309 6.7e-55 218.8 411 39.4
ECA246G0538 Erigeron canadensis HOM05D003707 ORTHO05D004309 2.5e-54 216.9 341 43.7
TWI12G0071 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 2.5e-54 216.9 318 44.7
HanXRQChr05g0163201 Helianthus annuus HOM05D003707 ORTHO05D004309 1.3e-53 214.5 339 43.1
Sed0001081 Sechium edule HOM05D003707 ORTHO05D004309 2.2e-53 213.8 337 40.1
PSO782G1937 Papaver somniferum HOM05D003707 ORTHO05D004309 3.7e-53 213.0 378 38.6
Sed0003858 Sechium edule HOM05D003707 ORTHO05D004309 1.2e-51 208.0 338 40.8
MSTRG.22171 Avicennia marina HOM05D003707 ORTHO05D004309 7.6e-51 205.3 339 39.8
Lsat_1_v5_gn_6_105560 Lactuca sativa HOM05D003707 ORTHO05D004309 1.7e-50 204.1 339 40.4
PSO063G2842 Papaver somniferum HOM05D003707 ORTHO05D004309 2.2e-50 203.8 377 37.9
DCAR_005285 Daucus carota HOM05D003707 ORTHO05D004309 2.9e-50 203.4 340 42.6
Migut.N02874 Erythranthe guttata HOM05D003707 ORTHO05D004309 2.9e-50 203.4 341 40.5
CsaV3_3G047770 Cucumis sativus L. HOM05D003707 ORTHO05D004309 3.8e-50 203.0 338 39.1
PGR031G2053 Punica granatum HOM05D003707 ORTHO05D004309 6.5e-50 202.2 335 40.6
Hund16884 Selenicereus undatus HOM05D003707 ORTHO05D004309 1.1e-49 201.4 318 43.7
FAN13G1833 Fragaria x ananassa HOM05D003707 ORTHO05D004309 4.2e-49 199.5 254 47.6
FAN18G3842 Fragaria x ananassa HOM05D003707 ORTHO05D004309 1.2e-48 198.0 258 46.9
THA.LOC104816564 Tarenaya hassleriana HOM05D003707 ORTHO05D004309 1.2e-48 198.0 340 40.6
PGR031G0663 Punica granatum HOM05D003707 ORTHO05D004309 2.1e-48 197.2 337 40.1
SalBow2G0015 Salvia bowleyana HOM05D003707 ORTHO05D004309 7.9e-48 195.3 338 39.3
SalBow2G2952 Salvia bowleyana HOM05D003707 ORTHO05D004309 7.9e-48 195.3 338 39.3
AUR62027820 Chenopodium quinoa HOM05D003707 ORTHO05D004309 2.5e-46 190.3 300 42.7
MSTRG.24439 Avicennia marina HOM05D003707 ORTHO05D004309 4.3e-46 189.5 305 42.0
CSS0014867 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 5.7e-46 189.1 317 41.0
MELO3C003545.2 Cucumis melo HOM05D003707 ORTHO05D004309 5.7e-46 189.1 338 37.9
AUR62018979 Chenopodium quinoa HOM05D003707 ORTHO05D004309 1.3e-45 188.0 299 43.1
HanXRQChr10g0278171 Helianthus annuus HOM05D003707 ORTHO05D004309 1.3e-45 188.0 317 40.4
CSS0001361 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 2.2e-45 187.2 317 40.7
SGA_v2.0_scaffold4G02188 Striga asiatica HOM05D003707 ORTHO05D004309 8.2e-45 185.3 341 39.6
Aa31LG9G14730 Aethionema arabicum HOM05D003707 ORTHO05D004309 4.1e-44 183.0 339 38.6
Dinv07080 Davidia involucrata HOM05D003707 ORTHO05D004309 4.1e-44 183.0 346 38.4
Peaxi162Scf00139g00014 Petunia axillaris HOM05D003707 ORTHO05D004309 5.3e-44 182.6 314 40.4
MD08G1189700 Malus domestica HOM05D003707 ORTHO05D004309 2.0e-43 180.6 194 53.1
CARHR260110 Cardamine hirsuta HOM05D003707 ORTHO05D004309 4.5e-43 179.5 273 43.6
Nn4g24800 Nelumbo nucifera HOM05D003707 ORTHO05D004309 2.9e-42 176.8 396 35.9
ECA247G2086 Erigeron canadensis HOM05D003707 ORTHO05D004309 1.9e-41 174.1 275 43.3
Thhalv10028816m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 7.2e-41 172.2 260 42.3
AL6G41440 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 2.1e-40 170.6 337 37.4
COL.COLO4_11998 Corchorus olitorius HOM05D003707 ORTHO05D004309 1.0e-39 168.3 214 49.5
Sp6g08460 Schrenkiella parvula HOM05D003707 ORTHO05D004309 1.0e-39 168.3 277 41.9
AT4G09060 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 5.1e-39 166.0 339 37.5
ClCG11G014370 Citrullus lanatus HOM05D003707 ORTHO05D004309 8.8e-39 165.2 338 36.1
BcaB01g02805 Brassica carinata HOM05D003707 ORTHO05D004309 1.1e-38 164.9 340 37.6
Thhalv10008342m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 2.2e-37 160.6 273 40.3
unitig_578.g16186 Utricularia gibba HOM05D003707 ORTHO05D004309 1.8e-36 157.5 334 36.5
Carub.0006s2764 Capsella rubella HOM05D003707 ORTHO05D004309 3.1e-36 156.8 317 38.8
unitig_8.g4846 Utricularia gibba HOM05D003707 ORTHO05D004309 4.1e-36 156.4 226 42.9
MBI06_g34539_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 6.9e-36 155.6 315 36.5
BraA03t12047Z Brassica rapa HOM05D003707 ORTHO05D004309 2.0e-35 154.1 370 34.1
Sp1g13060 Schrenkiella parvula HOM05D003707 ORTHO05D004309 7.7e-35 152.1 252 39.7
Oeu029730.1 Olea europaea HOM05D003707 ORTHO05D004309 9.4e-33 145.2 206 44.2
C03p34360 Brassica napus HOM05D003707 ORTHO05D004309 1.6e-32 144.4 312 36.9
BcaB02g06540 Brassica carinata HOM05D003707 ORTHO05D004309 1.0e-31 141.7 238 39.5
A03p28420 Brassica napus HOM05D003707 ORTHO05D004309 3.0e-31 140.2 272 37.9
BcaC01g04732 Brassica carinata HOM05D003707 ORTHO05D004309 3.9e-31 139.8 312 36.9
BolC3t15746H Brassica oleracea HOM05D003707 ORTHO05D004309 6.7e-31 139.0 343 35.6
Hma1.2p1_0526F.1_g172810 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 2.6e-30 137.1 213 43.2
CARHR015180 Cardamine hirsuta HOM05D003707 ORTHO05D004309 3.3e-30 136.7 276 37.3
Carub.0001s1444 Capsella rubella HOM05D003707 ORTHO05D004309 7.4e-30 135.6 275 37.5
C05p12640 Brassica napus HOM05D003707 ORTHO05D004309 2.8e-29 133.7 272 34.9
AT1G14680 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 4.8e-29 132.9 278 36.3
AL1G26650 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 1.4e-28 131.3 252 38.1
Sc23g0000420 Simmondsia chinensis HOM05D003707 ORTHO05D004309 2.4e-28 130.6 297 36.4
BraA06t24253Z Brassica rapa HOM05D003707 ORTHO05D004309 4.1e-28 129.8 249 36.5
BcaB01g01380 Brassica carinata HOM05D003707 ORTHO05D004309 7.0e-28 129.0 249 37.8
BcaC05g25387 Brassica carinata HOM05D003707 ORTHO05D004309 1.2e-27 128.3 232 38.8
CANSAT25G0959 Cannabis sativa HOM05D003707 ORTHO05D004309 1.2e-27 128.3 252 37.3
A09p29580 Brassica napus HOM05D003707 ORTHO05D004309 1.6e-27 127.9 339 34.5
BraA09t38526Z Brassica rapa HOM05D003707 ORTHO05D004309 1.6e-27 127.9 339 34.5
BolC5t30008H Brassica oleracea HOM05D000624 ORTHO05D000495 2.0e-27 127.5 237 37.6
Hund26994 Selenicereus undatus HOM05D003707 ORTHO05D004309 3.5e-27 126.7 252 36.5
A06p10740 Brassica napus HOM05D003707 ORTHO05D004309 5.9e-27 125.9 272 34.2
MD08G1190200 Malus domestica HOM05D003707 ORTHO05D004309 6.5e-26 122.5 222 38.3
Aqoxy3G04171 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 4.2e-25 119.8 380 31.1
RcHm_v2.0_Chr3g0481861 Rosa chinensis HOM05D003707 ORTHO05D004309 4.2e-25 119.8 170 48.2
RcHm_v2.0_Chr5g0045611 Rosa chinensis HOM05D003707 ORTHO05D004309 2.1e-24 117.5 171 48.5
Medtr5g064800 Medicago truncatula HOM05D009584 ORTHO05D011650 6.7e-23 112.5 216 43.1
Duzib116G0740 Durio zibethinus HOM05D003707 ORTHO05D004309 2.6e-22 110.5 95 63.2
Actinidia33120 Actinidia chinensis HOM05D003707 ORTHO05D004309 5.7e-22 109.4 234 35.0
MBI03_g38469_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 1.2e-16 91.7 294 27.9
Duzib114G0708 Durio zibethinus HOM05D003707 ORTHO05D004309 2.7e-16 90.5 99 48.5
CDE05G1426 Ceratophyllum demersum HOM05D003707 ORTHO05D004309 4.0e-15 86.7 215 34.0
RcHm_v2.0_Chr3g0481851 Rosa chinensis HOM05D003707 ORTHO05D004309 4.0e-15 86.7 97 49.5
Aqoxy5G03114 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 5.2e-15 86.3 108 44.4
HanXRQChr17g0556331 Helianthus annuus HOM05D003707 ORTHO05D004309 6.8e-15 85.9 158 37.3
EL10Ac4g09478 Beta vulgaris HOM05D029458 ORTHO05D004309 8.8e-15 85.5 99 48.5
RcHm_v2.0_Chr5g0040961 Rosa chinensis HOM05D003707 ORTHO05D004309 1.2e-14 85.1 95 55.8
MBI06_g46882_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 2.0e-14 84.3 114 42.1
MBI06_g47948_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 2.6e-14 84.0 114 42.1
RcHm_v2.0_Chr5g0049351 Rosa chinensis HOM05D003707 ORTHO05D004309 2.6e-14 84.0 95 50.5
C09p37650 Brassica napus HOM05D003707 ORTHO05D004309 1.7e-13 81.3 215 33.5
BolC9t56595H Brassica oleracea HOM05D003707 ORTHO05D004309 1.7e-13 81.3 215 33.5
Oeu029729.1 Olea europaea HOM05D003707 ORTHO05D004309 2.8e-13 80.5 97 46.4
MBI03_g47917_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 3.7e-13 80.1 301 25.2
BcaC07g41551 Brassica carinata HOM05D003707 ORTHO05D032288 8.3e-13 79.0 232 30.6
Os02g0831400 Oryza sativa ssp. japonica HOM05D003707 ORTHO05D004309 8.3e-13 79.0 315 29.5
RcHm_v2.0_Chr5g0045621 Rosa chinensis HOM05D003707 ORTHO05D004309 1.1e-12 78.6 105 45.7
ClCG08G011330 Citrullus lanatus HOM05D003707 ORTHO05D004309 1.8e-12 77.8 237 32.1
ATR0618G286 Amborella trichopoda HOM05D003707 ORTHO05D004309 3.1e-12 77.0 257 30.0
HPP92_025845 Vanilla planifolia HOM05D003707 ORTHO05D004309 1.6e-11 74.7 257 29.6
BcaC04g20946 Brassica carinata HOM05D003707 ORTHO05D004309 1.5e-09 68.2 200 32.0
CDE02G0255 Ceratophyllum demersum HOM05D003707 ORTHO05D004309 1.9e-09 67.8 108 36.1
Medtr5g064760 Medicago truncatula HOM05D003516 ORTHO05D004068 1.5e-06 58.2 137 39.4
RcHm_v2.0_Chr5g0049341 Rosa chinensis HOM05D003707 ORTHO05D004309 2.0e-06 57.8 91 49.5
Cpa.g.sc36.189 Carica papaya HOM05D003707 ORTHO05D004309 5.7e-06 56.2 227 30.8
Hma1.2p1_0526F.1_g172800 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 9.8e-06 55.5 68 47.1


User provided reference genes

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