Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g045040 Pisum sativum HOM05D005471 ORTHO05D006170 9.7e-228 793.1 393 100.0
Medtr3g103350 Medicago truncatula HOM05D005471 ORTHO05D006170 4.1e-202 708.0 395 89.4
TPR.G30210 Trifolium pratense HOM05D005471 ORTHO05D006170 1.1e-199 699.9 397 89.9
Lj1g0028245 Lotus japonicus HOM05D005471 ORTHO05D006170 5.7e-196 687.6 393 86.8
Glyma.06G048400 Glycine max HOM05D005471 ORTHO05D006170 2.0e-188 662.5 395 84.8
Phvul.009G073700 Phaseolus vulgaris HOM05D005471 ORTHO05D006170 1.6e-185 652.9 395 83.5
arahy.Tifrunner.gnm1.ann1.F72CPE Arachis hypogaea HOM05D005471 ORTHO05D006170 1.0e-181 640.2 396 83.1
Lalb_Chr11g0063001 Lupinus albus HOM05D005471 ORTHO05D006170 3.0e-181 638.6 395 82.8
arahy.Tifrunner.gnm1.ann1.P8GEK4 Arachis hypogaea HOM05D005471 ORTHO05D006170 5.7e-180 634.4 422 77.7
Lalb_Chr08g0245201 Lupinus albus HOM05D005471 ORTHO05D006170 5.9e-177 624.4 395 80.3
Ca_15890_v3 Cicer arietinum L. HOM05D005471 ORTHO05D006170 5.6e-175 617.8 397 80.1
VMungo1309G2773 Vigna mungo HOM05D005471 ORTHO05D006170 1.8e-165 586.3 397 78.3
MELO3C010789.2 Cucumis melo HOM05D005471 ORTHO05D006170 1.7e-163 579.7 395 73.9
MD08G1078900 Malus domestica HOM05D005471 ORTHO05D006170 2.9e-163 578.9 397 74.6
GSVIVG01009307001 Vitis vinifera HOM05D005471 ORTHO05D006170 6.4e-163 577.8 397 73.8
Thecc.08G085200 Theobroma cacao HOM05D005471 ORTHO05D006170 2.7e-161 572.4 393 72.8
Prupe.1G419800 Prunus persica HOM05D005471 ORTHO05D006170 4.6e-161 571.6 385 75.3
Gohir.D06G022300 Gossypium hirsutum HOM05D005471 ORTHO05D006170 6.0e-161 571.2 393 72.8
Gorai.010G026900 Gossypium raimondii HOM05D005471 ORTHO05D006170 6.0e-161 571.2 393 72.8
MD15G1065900 Malus domestica HOM05D005471 ORTHO05D006170 2.3e-160 569.3 397 73.8
Cfa013748 Carpinus fangiana HOM05D005471 ORTHO05D006170 3.9e-160 568.5 411 72.7
Dinv44934 Davidia involucrata HOM05D005471 ORTHO05D006170 5.1e-160 568.2 394 72.8
Ciclev10001411m.g Citrus clementina HOM05D005471 ORTHO05D006170 2.5e-159 565.8 395 71.9
CsaV3_2G025960 Cucumis sativus L. HOM05D005471 ORTHO05D006170 3.3e-159 565.5 395 72.2
Hma1.2p1_1170F.1_g263420 Hydrangea macrophylla HOM05D005471 ORTHO05D006170 4.3e-159 565.1 397 72.5
Gohir.A06G025200 Gossypium hirsutum HOM05D005471 ORTHO05D006170 5.6e-159 564.7 393 72.0
FvH4_2g32730 Fragaria vesca HOM05D005471 ORTHO05D006170 7.3e-159 564.3 393 73.3
Manes.18G048900 Manihot esculenta HOM05D005471 ORTHO05D006170 1.2e-158 563.5 395 72.4
FAN20G2694 Fragaria x ananassa HOM05D005471 ORTHO05D006170 1.4e-157 560.1 396 73.2
Sed0019663 Sechium edule HOM05D005471 ORTHO05D006170 6.8e-157 557.8 387 73.1
Atru.chr13.864 Acer truncatum HOM05D005471 ORTHO05D006170 1.2e-156 557.0 393 71.0
FAN15G0642 Fragaria x ananassa HOM05D005471 ORTHO05D006170 5.8e-156 554.7 396 72.5
Nn5g30656 Nelumbo nucifera HOM05D005471 ORTHO05D006170 1.3e-155 553.5 396 72.0
CiPaw.07G172600 Carya illinoinensis HOM05D005471 ORTHO05D006170 1.7e-155 553.1 412 69.9
COL.COLO4_28470 Corchorus olitorius HOM05D005471 ORTHO05D006170 6.4e-155 551.2 387 72.1
FAN27G0342 Fragaria x ananassa HOM05D005471 ORTHO05D006170 8.4e-155 550.8 410 70.7
Sabra14G0008300 Salix brachista HOM05D005471 ORTHO05D006170 3.2e-154 548.9 422 67.5
ClCG08G016670 Citrullus lanatus HOM05D005471 ORTHO05D006170 9.2e-154 547.4 391 71.4
Sc02g0008090 Simmondsia chinensis HOM05D005471 ORTHO05D006170 4.6e-153 545.0 397 69.8
Glyma.04G047500 Glycine max HOM05D005471 ORTHO05D006170 7.8e-153 544.3 395 72.9
Eucgr.F02230 Eucalyptus grandis HOM05D005471 ORTHO05D006170 1.0e-152 543.9 396 69.4
FAN24G0217 Fragaria x ananassa HOM05D005471 ORTHO05D006170 1.0e-152 543.9 388 72.4
Gorai.009G221700 Gossypium raimondii HOM05D005471 ORTHO05D006170 2.5e-151 539.3 393 69.7
Manes.05G183100 Manihot esculenta HOM05D005471 ORTHO05D006170 2.5e-151 539.3 395 70.1
RcHm_v2.0_Chr6g0309951 Rosa chinensis HOM05D005471 ORTHO05D006170 3.3e-151 538.9 394 70.6
Gohir.D05G215000 Gossypium hirsutum HOM05D005471 ORTHO05D006170 1.2e-150 537.0 393 69.5
Aqoxy6G02473 Aquilegia oxysepala HOM05D005471 ORTHO05D006170 2.1e-150 536.2 399 68.9
CSS0014765 Camellia sinensis var. sinensis HOM05D005471 ORTHO05D006170 2.6e-148 529.3 395 69.1
CSS0040686 Camellia sinensis var. sinensis HOM05D005471 ORTHO05D006170 9.9e-148 527.3 396 69.7
Ah.05g166980 Amaranthus hybridus HOM05D005471 ORTHO05D006170 1.7e-147 526.6 402 67.7
PGSC0003DMG400004915 Solanum tuberosum HOM05D005471 ORTHO05D006170 2.2e-147 526.2 396 69.4
Dinv39207 Davidia involucrata HOM05D005471 ORTHO05D006170 6.4e-147 524.6 396 68.7
CiPaw.08G051800 Carya illinoinensis HOM05D005471 ORTHO05D006170 1.1e-146 523.9 409 67.7
Solyc04g077560.3 Solanum lycopersicum HOM05D005471 ORTHO05D006170 1.9e-146 523.1 396 68.9
Sopen04g031200 Solanum pennellii HOM05D005471 ORTHO05D006170 4.2e-146 521.9 396 68.7
TWI12G0997 Tripterygium wilfordii HOM05D005471 ORTHO05D006170 4.2e-146 521.9 398 68.3
CARHR283850 Cardamine hirsuta HOM05D005471 ORTHO05D006170 7.8e-145 517.7 395 67.3
AT1G59520 Arabidopsis thaliana HOM05D005471 ORTHO05D006170 1.3e-144 516.9 394 67.0
ECA232G3342 Erigeron canadensis HOM05D005471 ORTHO05D006170 3.9e-144 515.4 397 67.5
MBI16_g27035_MAGBIO Magnolia biondii HOM05D005471 ORTHO05D006170 6.6e-144 514.6 441 62.1
THA.LOC104819922 Tarenaya hassleriana HOM05D005471 ORTHO05D006170 6.6e-144 514.6 399 66.7
SGA_v2.0_scaffold74G24542 Striga asiatica HOM05D005471 ORTHO05D006170 8.7e-144 514.2 401 67.3
Sp2g05030 Schrenkiella parvula HOM05D005471 ORTHO05D006170 1.9e-143 513.1 394 67.0
Duzib093G1789 Durio zibethinus HOM05D005471 ORTHO05D006170 3.3e-143 512.3 393 66.7
Carub.0002s0591 Capsella rubella HOM05D005471 ORTHO05D006170 5.6e-143 511.5 394 66.5
HanXRQChr09g0254061 Helianthus annuus HOM05D005471 ORTHO05D006170 2.8e-142 509.2 397 66.8
BcaC09g49476 Brassica carinata HOM05D005471 ORTHO05D006170 3.6e-142 508.8 394 66.2
CDE02G4131 Ceratophyllum demersum HOM05D005471 ORTHO05D006170 3.6e-142 508.8 394 66.2
CSS0038926 Camellia sinensis var. sinensis HOM05D005471 ORTHO05D006170 4.8e-142 508.4 425 65.2
HanXRQChr15g0493081 Helianthus annuus HOM05D005471 ORTHO05D006170 2.4e-141 506.1 398 66.6
Migut.C00408 Erythranthe guttata HOM05D005471 ORTHO05D006170 3.1e-141 505.8 401 64.8
Cc10_g07570 Coffea canephora HOM05D005471 ORTHO05D006170 1.2e-140 503.8 388 64.7
PSO017G6379 Papaver somniferum HOM05D005471 ORTHO05D006170 2.2e-139 499.6 390 65.4
EL10Ac1g02354 Beta vulgaris HOM05D005471 ORTHO05D006170 2.9e-139 499.2 395 65.8
A01p28660 Brassica napus HOM05D005471 ORTHO05D006170 4.9e-139 498.4 391 66.0
MSTRG.25028 Avicennia marina HOM05D005471 ORTHO05D006170 1.9e-138 496.5 396 64.1
C01p36310 Brassica napus HOM05D005471 ORTHO05D006170 3.2e-138 495.7 387 66.1
BraA01t03038Z Brassica rapa HOM05D005471 ORTHO05D006170 1.2e-137 493.8 398 65.1
Rhsim06G0064300 Rhododendron simsii HOM05D005471 ORTHO05D006170 1.6e-137 493.4 387 66.7
BolC1t03588H Brassica oleracea HOM05D005471 ORTHO05D006170 2.1e-137 493.0 398 65.1
Gohir.D06G026900 Gossypium hirsutum HOM05D005471 ORTHO05D006170 4.6e-137 491.9 354 71.5
Gohir.A05G211700 Gossypium hirsutum HOM05D005471 ORTHO05D006170 7.9e-137 491.1 393 64.9
ATR0739G016 Amborella trichopoda HOM05D005471 ORTHO05D006170 5.1e-136 488.4 386 64.2
PSO675G5405 Papaver somniferum HOM05D005471 ORTHO05D006170 4.3e-135 485.3 399 64.2
PSO541G0412 Papaver somniferum HOM05D005471 ORTHO05D006170 1.3e-134 483.8 396 65.2
PSO170G6612 Papaver somniferum HOM05D005471 ORTHO05D006170 2.8e-134 482.6 390 63.8
BcaC09g49477 Brassica carinata HOM05D005471 ORTHO05D006170 3.1e-133 479.2 385 65.7
unitig_37.g13113 Utricularia gibba HOM05D005471 ORTHO05D006170 9.0e-133 477.6 405 62.7
Thhalv10023553m.g Eutrema salsugineum HOM05D005471 ORTHO05D006170 1.9e-130 469.9 394 61.9
PGR031G3068 Punica granatum HOM05D005471 ORTHO05D006170 6.0e-129 464.9 394 60.9
HPP92_007709 Vanilla planifolia HOM05D005471 ORTHO05D006170 1.8e-128 463.4 392 61.5
Nitab4.5_0001426g0050 Nicotiana tabacum HOM05D005471 ORTHO05D006170 6.2e-126 454.9 429 58.3
Aa31LG2G10610 Aethionema arabicum HOM05D005471 ORTHO05D006170 3.4e-124 449.1 410 59.0
TAR625G0189 Trochodendron aralioides HOM05D005471 ORTHO05D006170 1.3e-118 430.6 307 72.3
DCAR_019346 Daucus carota HOM05D005471 ORTHO05D006170 1.4e-117 427.2 394 59.1
Os07g0248800 Oryza sativa ssp. japonica HOM05D005471 ORTHO05D006170 3.4e-116 422.5 389 57.3
Os10g0102900 Oryza sativa ssp. japonica HOM05D005471 ORTHO05D006170 1.0e-115 421.0 389 57.3
BcaB04g20211 Brassica carinata HOM05D005471 ORTHO05D006170 1.1e-114 417.5 394 57.6
AUR62035006 Chenopodium quinoa HOM05D005471 ORTHO05D006170 1.4e-114 417.2 399 57.6
Os04g0183100 Oryza sativa ssp. japonica HOM05D005471 ORTHO05D006170 1.4e-114 417.2 392 56.6
Lsat_1_v5_gn_1_56140 Lactuca sativa HOM05D001400 ORTHO05D001795 7.2e-114 414.8 386 57.8
Nitab4.5_0002796g0080 Nicotiana tabacum HOM05D005471 ORTHO05D006170 6.1e-113 411.8 415 56.6
Lj4A753G30 Lonicera japonica HOM05D005471 ORTHO05D006170 3.3e-111 406.0 375 58.7
Zm00001eb025640 Zea mays HOM05D005471 ORTHO05D006170 5.7e-111 405.2 390 55.1
Potri.014G013500 Populus trichocarpa HOM05D005471 ORTHO05D006170 4.5e-108 395.6 269 72.5
Lsat_1_v5_gn_2_90520 Lactuca sativa HOM05D005471 ORTHO05D006170 1.2e-105 387.5 397 57.4
Peaxi162Scf00340g00069 Petunia axillaris HOM05D005471 ORTHO05D006170 2.6e-100 369.8 437 51.7
Mapoly0067s0099 Marchantia polymorpha HOM05D005471 ORTHO05D006170 3.7e-94 349.4 399 49.6
Cpa.g.sc142.57 Carica papaya HOM05D005471 ORTHO05D006170 1.2e-92 344.4 304 60.2
QL12p038448 Quercus lobata HOM05D005471 ORTHO05D006170 8.5e-91 338.2 299 58.2
Nitab4.5_0006888g0020 Nicotiana tabacum HOM05D005471 ORTHO05D006170 1.9e-90 337.0 420 48.1
Psat5g037200 Pisum sativum HOM05D005471 ORTHO05D006170 1.2e-84 317.8 153 100.0
Pp3c17_20680 Physcomitrium patens HOM05D005471 ORTHO05D006170 1.3e-83 314.3 387 47.0
AagrBONN_evm.TU.Sc2ySwM_368.1412 Anthoceros agrestis HOM05D005471 ORTHO05D006170 2.9e-83 313.2 392 43.9
SMO117G0302 Selaginella moellendorffii HOM05D005471 ORTHO05D006170 3.0e-80 303.1 380 44.5
vmacro21421 Vaccinium macrocarpon HOM05D005471 ORTHO05D006170 7.2e-74 282.0 294 51.4
CBR_g49495 Chara braunii HOM05D005471 ORTHO05D006170 1.7e-70 270.8 423 40.7
DCAR_020058 Daucus carota HOM05D005471 ORTHO05D006170 1.7e-70 270.8 236 58.1
AUR62037460 Chenopodium quinoa HOM05D005471 ORTHO05D006170 6.6e-59 232.3 247 49.8
Haze_22399 Corylus avellana HOM05D005471 ORTHO05D006170 6.2e-57 225.7 339 44.2
Haze_22407 Corylus avellana HOM05D005471 ORTHO05D006170 1.1e-53 214.9 353 42.2
vmacro21420 Vaccinium macrocarpon HOM05D005471 ORTHO05D006170 6.6e-51 205.7 144 75.0
Gorai.012G030800 Gossypium raimondii HOM05D005471 ORTHO05D006170 3.9e-35 153.3 109 71.6
Gohir.D04G027975 Gossypium hirsutum HOM05D005471 ORTHO05D006170 1.1e-34 151.8 109 70.6
Gohir.D12G192766 Gossypium hirsutum HOM05D005471 ORTHO05D006170 5.6e-34 149.4 109 70.6
Gohir.A12G016250 Gossypium hirsutum HOM05D005471 ORTHO05D006170 1.8e-32 144.4 109 68.8
Hund05280 Selenicereus undatus HOM05D005471 ORTHO05D006170 2.9e-30 137.1 97 63.9
QL12p038454 Quercus lobata HOM05D005471 ORTHO05D006170 4.2e-29 133.3 116 63.8
SHI08425 Sapria himalayana HOM05D005471 ORTHO05D006170 1.0e-27 128.6 123 52.8
Cpa.g.sc142.58 Carica papaya HOM05D005471 ORTHO05D006170 3.0e-27 127.1 87 74.7
Phvul.009G072300 Phaseolus vulgaris HOM05D005471 ORTHO05D000997 7.3e-26 122.5 78 74.4
DCAR_020059 Daucus carota HOM05D005471 ORTHO05D006170 6.9e-24 115.9 96 68.8
Peaxi162Scf00448g00027 Petunia axillaris HOM05D005471 ORTHO05D006170 4.5e-23 113.2 117 59.0
Gorai.001G227100 Gossypium raimondii HOM05D005471 ORTHO05D006170 1.5e-18 98.2 66 74.2
SEGI_08278 Sequoiadendron giganteum HOM05D005471 ORTHO05D006170 2.0e-15 87.8 106 42.5
Actinidia31832 Actinidia chinensis HOM05D006494 ORTHO05D007787 8.4e-14 82.4 56 67.9
Cre07.g320250 Chlamydomonas reinhardtii HOM05D005471 ORTHO05D006170 3.5e-12 77.0 353 24.1
Gohir.D11G128350 Gossypium hirsutum HOM05D005471 ORTHO05D006170 6.7e-11 72.8 50 70.0
SEGI_29276 Sequoiadendron giganteum HOM05D005471 ORTHO05D006170 3.3e-10 70.5 88 48.9
CAN.G213.23 Capsicum annuum HOM05D005471 ORTHO05D006170 4.3e-10 70.1 102 36.3
Phvul.009G072333 Phaseolus vulgaris HOM05D005471 ORTHO05D006170 5.6e-10 69.7 55 61.8


User provided reference genes

Program Settings