Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g044440 Pisum sativum HOM05D000561 ORTHO05D008162 5.0e-182 641.0 322 100.0
Medtr3g101350 Medicago truncatula HOM05D000561 ORTHO05D008162 1.7e-142 509.6 308 86.0
TPR.G10521 Trifolium pratense HOM05D000561 ORTHO05D008162 3.0e-142 508.8 309 85.4
Ca_15966_v3 Cicer arietinum L. HOM05D000561 ORTHO05D008162 1.1e-133 480.3 288 86.5
Lj1g0015016 Lotus japonicus HOM05D000561 ORTHO05D008162 1.0e-126 457.2 300 77.7
Lalb_Chr08g0245641 Lupinus albus HOM05D000561 ORTHO05D008162 7.4e-125 451.1 309 76.1
arahy.Tifrunner.gnm1.ann1.YYC1CT Arachis hypogaea HOM05D000561 ORTHO05D008162 4.8e-124 448.4 294 78.6
Phvul.009G063100 Phaseolus vulgaris HOM05D000561 ORTHO05D008162 6.1e-119 431.4 303 73.9
Glyma.06G037300 Glycine max HOM05D000561 ORTHO05D008162 1.5e-117 426.8 297 74.1
Atru.chr13.629 Acer truncatum HOM05D000561 ORTHO05D008162 2.9e-105 386.0 310 65.8
Atru.chr13.633 Acer truncatum HOM05D000561 ORTHO05D008162 2.9e-105 386.0 310 65.8
TWI56G0230 Tripterygium wilfordii HOM05D000561 ORTHO05D008162 3.2e-104 382.5 291 68.7
Potri.014G034700 Populus trichocarpa HOM05D000561 ORTHO05D008162 9.4e-104 380.9 303 65.3
Duzib116G0222 Durio zibethinus HOM05D000561 ORTHO05D008162 1.6e-103 380.2 298 67.4
GSVIVG01009559001 Vitis vinifera HOM05D000561 ORTHO05D008162 1.4e-102 377.1 311 65.0
TAR628G0509 Trochodendron aralioides HOM05D000561 ORTHO05D008162 3.9e-102 375.6 307 64.5
CSS0036187 Camellia sinensis var. sinensis HOM05D000561 ORTHO05D008162 4.4e-101 372.1 253 73.9
TAR625G0340 Trochodendron aralioides HOM05D000561 ORTHO05D008162 4.4e-101 372.1 286 66.8
CiPaw.16G047800 Carya illinoinensis HOM05D000561 ORTHO05D008162 1.7e-100 370.2 287 65.9
vmacro21557 Vaccinium macrocarpon HOM05D000561 ORTHO05D008162 4.8e-100 368.6 310 63.5
Gohir.D05G203500 Gossypium hirsutum HOM05D000561 ORTHO05D008162 6.3e-100 368.2 299 65.2
Nn5g30201 Nelumbo nucifera HOM05D000561 ORTHO05D000514 8.2e-100 367.9 253 72.3
Ciclev10001965m.g Citrus clementina HOM05D000561 ORTHO05D008162 1.4e-99 367.1 301 66.8
Dinv39338 Davidia involucrata HOM05D000561 ORTHO05D008162 1.4e-99 367.1 313 62.3
Sp4g07760 Schrenkiella parvula HOM05D000561 ORTHO05D008162 2.4e-99 366.3 288 64.6
Prupe.1G440800 Prunus persica HOM05D000561 ORTHO05D008162 3.1e-99 365.9 299 65.6
Actinidia22609 Actinidia chinensis HOM05D000561 ORTHO05D008162 7.0e-99 364.8 314 63.1
MD08G1106500 Malus domestica HOM05D000561 ORTHO05D008162 9.1e-99 364.4 294 66.3
RcHm_v2.0_Chr6g0307161 Rosa chinensis HOM05D000561 ORTHO05D008162 9.1e-99 364.4 278 67.3
Duzib093G1567 Durio zibethinus HOM05D000561 ORTHO05D008162 1.6e-98 363.6 299 64.9
Gorai.009G209500 Gossypium raimondii HOM05D000561 ORTHO05D008162 1.6e-98 363.6 300 65.0
Sed0001510 Sechium edule HOM05D000561 ORTHO05D008162 2.6e-98 362.8 311 62.4
Rhsim06G0046600 Rhododendron simsii HOM05D000561 ORTHO05D008162 3.5e-98 362.5 308 63.0
Manes.05G170800 Manihot esculenta HOM05D000561 ORTHO05D008162 1.7e-97 360.1 301 63.5
MELO3C010892.2 Cucumis melo HOM05D000561 ORTHO05D008162 5.0e-97 358.6 305 61.6
ClCG08G015630 Citrullus lanatus HOM05D000561 ORTHO05D008162 6.5e-97 358.2 304 63.2
Gohir.A05G200200 Gossypium hirsutum HOM05D000561 ORTHO05D008162 1.1e-96 357.5 299 64.2
Hma1.2p1_0260F.1_g104740 Hydrangea macrophylla HOM05D000561 ORTHO05D008162 1.9e-96 356.7 310 60.6
Sabra14G0024600 Salix brachista HOM05D000561 ORTHO05D008162 2.5e-96 356.3 293 65.2
CsaV3_2G028140 Cucumis sativus L. HOM05D000561 ORTHO05D008162 4.2e-96 355.5 300 62.7
Solyc04g079320.4 Solanum lycopersicum HOM05D000561 ORTHO05D008162 4.2e-96 355.5 256 68.0
Sopen04g032930 Solanum pennellii HOM05D000561 ORTHO05D008162 4.2e-96 355.5 256 68.0
MD15G1087100 Malus domestica HOM05D000561 ORTHO05D008162 7.2e-96 354.8 284 65.1
QL02p005893 Quercus lobata HOM05D000561 ORTHO05D008162 7.2e-96 354.8 254 69.7
AL4G19400 Arabidopsis lyrata HOM05D000561 ORTHO05D008162 9.4e-96 354.4 268 66.0
AT2G26540 Arabidopsis thaliana HOM05D000561 ORTHO05D008162 9.4e-96 354.4 288 62.8
BcaB08g35302 Brassica carinata HOM05D000561 ORTHO05D008162 2.1e-95 353.2 294 62.2
THA.LOC104803685 Tarenaya hassleriana HOM05D000561 ORTHO05D008162 2.1e-95 353.2 255 68.2
Aa31LG10G9880 Aethionema arabicum HOM05D000561 ORTHO05D008162 2.7e-95 352.8 304 60.9
Carub.0003s2738 Capsella rubella HOM05D000561 ORTHO05D008162 3.6e-95 352.4 252 67.9
VMungo1309G1588 Vigna mungo HOM05D000561 ORTHO05D008162 1.0e-94 350.9 230 75.7
CAN.G371.47 Capsicum annuum HOM05D000561 ORTHO05D008162 1.4e-94 350.5 312 59.6
FAN27G1876 Fragaria x ananassa HOM05D000561 ORTHO05D008162 2.3e-94 349.7 311 62.1
A09p55150 Brassica napus HOM05D000561 ORTHO05D008162 6.7e-94 348.2 258 67.1
PSO675G5921 Papaver somniferum HOM05D000561 ORTHO05D008162 6.7e-94 348.2 257 68.1
C08p38080 Brassica napus HOM05D000561 ORTHO05D008162 1.5e-93 347.1 258 67.1
Thecc.08G013400 Theobroma cacao HOM05D000561 ORTHO05D008162 1.5e-93 347.1 277 67.1
BolC8t51383H Brassica oleracea HOM05D000561 ORTHO05D008162 2.0e-93 346.7 256 67.6
Thhalv10001252m.g Eutrema salsugineum HOM05D000561 ORTHO05D008162 3.3e-93 345.9 270 64.4
BraA09t40923Z Brassica rapa HOM05D000561 ORTHO05D008162 9.7e-93 344.4 258 66.7
PSO541G5839 Papaver somniferum HOM05D000561 ORTHO05D008162 9.7e-93 344.4 250 68.4
Haze_17567 Corylus avellana HOM05D000561 ORTHO05D008162 1.3e-92 344.0 288 63.5
CARHR050650 Cardamine hirsuta HOM05D000561 ORTHO05D008162 8.2e-92 341.3 256 64.5
Cc10_g03990 Coffea canephora HOM05D000561 ORTHO05D008162 1.4e-91 340.5 258 65.9
FvH4_2g34880 Fragaria vesca HOM05D000561 ORTHO05D008162 1.4e-91 340.5 272 66.9
COL.COLO4_26457 Corchorus olitorius HOM05D000561 ORTHO05D008162 5.3e-91 338.6 231 72.3
Aqoxy6G01386 Aquilegia oxysepala HOM05D000561 ORTHO05D008162 1.6e-90 337.0 252 67.1
Nitab4.5_0005549g0040 Nicotiana tabacum HOM05D000561 ORTHO05D008162 2.7e-90 336.3 236 70.8
MBI06_g08185_MAGBIO Magnolia biondii HOM05D000561 ORTHO05D008162 4.5e-90 335.5 287 60.6
BcaC07g40815 Brassica carinata HOM05D000561 ORTHO05D008162 7.7e-90 334.7 259 65.3
Nitab4.5_0000068g0440 Nicotiana tabacum HOM05D000561 ORTHO05D008162 1.0e-89 334.3 236 70.8
CDE06G2652 Ceratophyllum demersum HOM05D000561 ORTHO05D008162 1.3e-89 334.0 294 59.9
DCAR_019467 Daucus carota HOM05D000561 ORTHO05D008162 1.7e-89 333.6 299 59.5
Manes.18G034000 Manihot esculenta HOM05D000561 ORTHO05D008162 1.5e-88 330.5 284 62.3
HanXRQChr02g0038741 Helianthus annuus HOM05D000561 ORTHO05D008162 3.2e-88 329.3 259 63.7
Peaxi162Scf00566g00219 Petunia axillaris HOM05D000561 ORTHO05D008162 3.2e-88 329.3 244 68.4
HanXRQChr09g0268001 Helianthus annuus HOM05D000561 ORTHO05D008162 2.7e-87 326.2 302 58.9
HPP92_011186 Vanilla planifolia HOM05D000561 ORTHO05D008162 2.7e-87 326.2 308 57.8
MSTRG.1332 Avicennia marina HOM05D000561 ORTHO05D008162 3.6e-87 325.9 303 56.1
ECA232G0584 Erigeron canadensis HOM05D000561 ORTHO05D008162 4.7e-87 325.5 267 60.3
Sabra02G0100300 Salix brachista HOM05D000561 ORTHO05D008162 1.0e-86 324.3 274 65.0
Glyma.04G037000 Glycine max HOM05D000561 ORTHO05D008162 8.8e-86 321.2 243 70.8
Migut.C00604 Erythranthe guttata HOM05D000561 ORTHO05D008162 4.4e-85 318.9 315 55.9
Eucgr.F02370 Eucalyptus grandis HOM05D000561 ORTHO05D008162 4.4e-85 318.9 231 68.0
Lsat_1_v5_gn_1_20480 Lactuca sativa HOM05D000561 ORTHO05D008162 7.5e-85 318.2 305 57.4
PGR031G3300 Punica granatum HOM05D000561 ORTHO05D008162 7.5e-85 318.2 267 63.7
Os03g0186100 Oryza sativa ssp. japonica HOM05D000561 ORTHO05D008162 3.7e-84 315.8 256 62.5
Zm00001eb006450 Zea mays HOM05D000561 ORTHO05D008162 6.3e-84 315.1 277 59.2
SalBow7G2378 Salvia bowleyana HOM05D000561 ORTHO05D008162 1.1e-83 314.3 349 51.6
EL10Ac1g01805 Beta vulgaris HOM05D000561 ORTHO05D008162 1.4e-83 313.9 302 57.9
Lsat_1_v5_gn_4_124200 Lactuca sativa HOM05D000561 ORTHO05D008162 2.7e-82 309.7 294 57.5
Migut.O00512 Erythranthe guttata HOM05D000561 ORTHO05D008162 7.2e-80 301.6 343 49.3
SGA_v2.0_scaffold71G24043 Striga asiatica HOM05D000561 ORTHO05D008162 1.2e-79 300.8 264 60.2
FAN20G2490 Fragaria x ananassa HOM05D000561 ORTHO05D008162 2.7e-79 299.7 408 47.1
ATR0087G004 Amborella trichopoda HOM05D000561 ORTHO05D008162 1.4e-78 297.4 227 63.4
Hund26617 Selenicereus undatus HOM05D000561 ORTHO05D008162 8.8e-78 294.7 428 42.8
Pp3c9_18350 Physcomitrium patens HOM05D000561 ORTHO05D008162 1.2e-71 274.2 287 48.1
Ah.06g192790 Amaranthus hybridus HOM05D000561 ORTHO05D008162 3.4e-69 266.2 330 48.2
Cpa.g.sc64.2 Carica papaya HOM05D000561 ORTHO05D008162 5.7e-69 265.4 188 70.7
Mapoly0101s0072 Marchantia polymorpha HOM05D000561 ORTHO05D008162 2.2e-68 263.5 256 52.3
AUR62022458 Chenopodium quinoa HOM05D000561 ORTHO05D008162 3.7e-68 262.7 206 64.1
Carub.0004s0671 Capsella rubella HOM05D000561 ORTHO05D008162 4.9e-68 262.3 258 55.8
Lj4A51T47 Lonicera japonica HOM05D000561 ORTHO05D008162 4.9e-68 262.3 194 69.1
SEGI_40608 Sequoiadendron giganteum HOM05D000561 ORTHO05D008162 5.9e-66 255.4 210 58.6
AagrBONN_evm.TU.Sc2ySwM_228.1283 Anthoceros agrestis HOM05D000561 ORTHO05D008162 2.3e-65 253.4 271 48.0
SHI08313 Sapria himalayana HOM05D000561 ORTHO05D008162 3.6e-63 246.1 248 53.2
arahy.Tifrunner.gnm1.ann1.96H4RR Arachis hypogaea HOM05D000561 ORTHO05D008162 1.0e-62 244.6 250 58.4
CBR_g12178 Chara braunii HOM05D000561 ORTHO05D008162 1.4e-59 234.2 278 45.3
ECA247G1201 Erigeron canadensis HOM05D000561 ORTHO05D000514 1.9e-59 233.8 199 56.3
SMO367G0032 Selaginella moellendorffii HOM05D000561 ORTHO05D008162 5.4e-59 232.3 244 48.0
Sc26g0003980 Simmondsia chinensis HOM05D000561 ORTHO05D008162 5.0e-57 225.7 173 65.9
AUR62040067 Chenopodium quinoa HOM05D000561 ORTHO05D008162 2.5e-56 223.4 308 45.1
CDE10G0258 Ceratophyllum demersum HOM05D000561 ORTHO05D008162 1.4e-51 207.6 171 62.6
Cre09.g409100 Chlamydomonas reinhardtii HOM05D000561 ORTHO05D008162 4.1e-51 206.1 247 45.7
MCO15G161 Micromonas commoda HOM05D000561 ORTHO05D008162 1.5e-48 197.6 245 46.1
Migut.N02692 Erythranthe guttata HOM05D000561 ORTHO05D008162 3.3e-48 196.4 204 53.4
PRCOL_00005348 Prasinoderma coloniale HOM05D000561 ORTHO05D008162 5.2e-46 189.1 247 42.5
unitig_32.g11128 Utricularia gibba HOM05D000561 ORTHO05D008162 2.7e-42 176.8 140 61.4
SGA_v2.0_scaffold217G42442 Striga asiatica HOM05D000561 ORTHO05D008162 9.3e-35 151.8 122 62.3
Lsat_1_v5_gn_2_45600 Lactuca sativa HOM05D000561 ORTHO05D008162 2.7e-34 150.2 205 41.5
Lsat_1_v5_gn_5_145360 Lactuca sativa HOM05D000561 ORTHO05D008162 1.9e-27 127.5 162 44.4
SGA_v2.0_scaffold217G42441 Striga asiatica HOM05D000561 ORTHO05D008162 1.2e-18 98.2 79 59.5
Lsat_1_v5_gn_5_39421 Lactuca sativa HOM05D000487 ORTHO05D048384 4.8e-15 86.3 82 48.8
VMungo1309G1169 Vigna mungo HOM05D000561 ORTHO05D432855 1.8e-06 57.8 86 45.3


User provided reference genes

Program Settings