Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g043640 Pisum sativum HOM05D000955 ORTHO05D003340 8.4e-57 223.4 108 100.0
TPR.G28116 Trifolium pratense HOM05D000955 ORTHO05D003340 4.1e-35 151.4 95 76.8
Medtr3g101610 Medicago truncatula HOM05D000955 ORTHO05D003340 9.0e-35 150.2 96 75.0
Medtr3g101600 Medicago truncatula HOM05D000955 ORTHO05D003340 1.4e-32 142.9 98 70.4
Glyma.04G038300 Glycine max HOM05D000955 ORTHO05D003340 1.6e-31 139.4 95 72.6
Glyma.06G039400 Glycine max HOM05D000955 ORTHO05D003340 6.1e-31 137.5 95 72.6
Phvul.009G064500 Phaseolus vulgaris HOM05D000955 ORTHO05D003340 1.5e-29 132.9 95 69.5
Glyma.06G039300 Glycine max HOM05D000955 ORTHO05D003340 9.7e-29 130.2 95 70.5
Medtr1g019720 Medicago truncatula HOM05D000955 ORTHO05D003340 4.1e-27 124.8 95 61.1
TPR.G17546 Trifolium pratense HOM05D000955 ORTHO05D003340 1.2e-26 123.2 95 60.0
Psat6g013560 Pisum sativum HOM05D000955 ORTHO05D003340 5.9e-26 120.9 95 60.0
Medtr1g019715 Medicago truncatula HOM05D000955 ORTHO05D003340 1.3e-25 119.8 95 58.9
Psat6g013520 Pisum sativum HOM05D000955 ORTHO05D003340 2.2e-25 119.0 95 60.0
Ca_13297_v3 Cicer arietinum L. HOM05D000955 ORTHO05D003340 2.9e-25 118.6 95 61.1
TPR.G10919 Trifolium pratense HOM05D000955 ORTHO05D003340 8.5e-25 117.1 103 53.4
Psat6g013600 Pisum sativum HOM05D000955 ORTHO05D003340 1.9e-24 115.9 95 56.8
Psat6g013720 Pisum sativum HOM05D000955 ORTHO05D003340 2.5e-24 115.5 93 59.1
arahy.Tifrunner.gnm1.ann1.LA24B5 Arachis hypogaea HOM05D000955 ORTHO05D003340 4.2e-24 114.8 94 61.7
Glyma.17G242800 Glycine max HOM05D000955 ORTHO05D003340 1.2e-23 113.2 95 57.9
TPR.G17533 Trifolium pratense HOM05D000955 ORTHO05D003340 1.6e-23 112.8 95 57.9
Psat6g013640 Pisum sativum HOM05D000955 ORTHO05D003340 2.7e-23 112.1 93 58.1
Gohir.A06G017800 Gossypium hirsutum HOM05D000955 ORTHO05D003340 1.9e-16 89.4 94 48.9
Aqoxy6G01348 Aquilegia oxysepala HOM05D000955 ORTHO05D003340 4.2e-16 88.2 84 52.4
Prupe.1G437300 Prunus persica HOM05D000955 ORTHO05D003340 7.2e-16 87.4 88 52.3
Nn1g04889 Nelumbo nucifera HOM05D000955 ORTHO05D003340 1.2e-15 86.7 89 50.6
Oeu004829.1 Olea europaea HOM05D000955 ORTHO05D003340 2.7e-15 85.5 81 51.9
Nitab4.5_0001580g0040 Nicotiana tabacum HOM05D000955 ORTHO05D003340 6.1e-15 84.3 82 52.4
Gorai.005G102900 Gossypium raimondii HOM05D000955 ORTHO05D003340 1.0e-14 83.6 78 53.8
COL.COLO4_26487 Corchorus olitorius HOM05D000955 ORTHO05D003340 2.3e-14 82.4 80 51.2
Nitab4.5_0007986g0020 Nicotiana tabacum HOM05D000955 ORTHO05D003340 3.0e-14 82.0 82 51.2
HanXRQChr09g0267871 Helianthus annuus HOM05D000955 ORTHO05D003340 3.9e-14 81.6 98 46.9
Lj4C54T13 Lonicera japonica HOM05D000955 ORTHO05D003340 3.9e-14 81.6 84 51.2
Peaxi162Scf00064g00025 Petunia axillaris HOM05D000955 ORTHO05D003340 6.7e-14 80.9 90 45.6
Potri.014G030800 Populus trichocarpa HOM05D000955 ORTHO05D003340 8.8e-14 80.5 82 52.4
Gohir.A06G017700 Gossypium hirsutum HOM05D000955 ORTHO05D003340 1.1e-13 80.1 81 50.6
Rhsim07G0229400 Rhododendron simsii HOM05D000955 ORTHO05D003340 1.1e-13 80.1 83 43.4
COL.COLO4_26485 Corchorus olitorius HOM05D000955 ORTHO05D003340 1.5e-13 79.7 80 48.8
Manes.18G035800 Manihot esculenta HOM05D000955 ORTHO05D003340 1.5e-13 79.7 94 47.9
Potri.014G030900 Populus trichocarpa HOM05D000955 ORTHO05D003340 1.5e-13 79.7 84 50.0
Dinv39322 Davidia involucrata HOM05D000955 ORTHO05D003340 2.0e-13 79.3 77 50.6
Thecc.08G010100 Theobroma cacao HOM05D000955 ORTHO05D003340 2.0e-13 79.3 84 48.8
Peaxi162Scf00064g00006 Petunia axillaris HOM05D000955 ORTHO05D003340 3.3e-13 78.6 80 52.5
Gorai.010G018800 Gossypium raimondii HOM05D000955 ORTHO05D003340 4.4e-13 78.2 81 48.1
COL.COLO4_26486 Corchorus olitorius HOM05D000955 ORTHO05D003340 5.7e-13 77.8 80 48.8
DCAR_008792 Daucus carota HOM05D000955 ORTHO05D003340 5.7e-13 77.8 86 47.7
RcHm_v2.0_Chr5g0048521 Rosa chinensis HOM05D000955 ORTHO05D003340 5.7e-13 77.8 88 48.9
HPP92_004112 Vanilla planifolia HOM05D000955 ORTHO05D003340 5.7e-13 77.8 80 46.2
Aqoxy5G01248 Aquilegia oxysepala HOM05D000955 ORTHO05D003340 7.4e-13 77.4 78 48.7
CSS0029458 Camellia sinensis var. sinensis HOM05D000955 ORTHO05D003340 7.4e-13 77.4 88 46.6
Gohir.A06G018100 Gossypium hirsutum HOM05D000955 ORTHO05D003340 7.4e-13 77.4 81 48.1
Gohir.D06G015700 Gossypium hirsutum HOM05D000955 ORTHO05D003340 7.4e-13 77.4 85 48.2
Gohir.D06G016000 Gossypium hirsutum HOM05D000955 ORTHO05D003340 7.4e-13 77.4 81 48.1
Gorai.010G018600 Gossypium raimondii HOM05D000955 ORTHO05D003340 7.4e-13 77.4 81 48.1
vmacro21529 Vaccinium macrocarpon HOM05D000955 ORTHO05D003340 7.4e-13 77.4 82 46.3
CAN.G1518.2 Capsicum annuum HOM05D000955 ORTHO05D003340 9.7e-13 77.0 87 47.1
ECA232G3034 Erigeron canadensis HOM05D000955 ORTHO05D003340 1.3e-12 76.6 92 41.3
MBI06_g36647_MAGBIO Magnolia biondii HOM05D000955 ORTHO05D003340 1.3e-12 76.6 94 42.6
CAN.G371.28 Capsicum annuum HOM05D000955 ORTHO05D003340 1.7e-12 76.3 89 49.4
Gohir.D06G015900 Gossypium hirsutum HOM05D000955 ORTHO05D003340 1.7e-12 76.3 85 47.1
Potri.014G030500 Populus trichocarpa HOM05D000955 ORTHO05D003340 1.7e-12 76.3 80 48.8
Sabra14G0021800 Salix brachista HOM05D000955 ORTHO05D003340 1.7e-12 76.3 78 52.6
Duzib116G0076 Durio zibethinus HOM05D000955 ORTHO05D003340 2.2e-12 75.9 78 50.0
Gorai.010G018500 Gossypium raimondii HOM05D000955 ORTHO05D003340 2.2e-12 75.9 85 47.1
Cc10_g04230 Coffea canephora HOM05D000955 ORTHO05D003340 2.8e-12 75.5 78 47.4
Nn5g30250 Nelumbo nucifera HOM05D000955 ORTHO05D003340 2.8e-12 75.5 84 45.2
Solyc04g079080.2 Solanum lycopersicum HOM05D000955 ORTHO05D003340 2.8e-12 75.5 88 50.0
Sopen04g032690 Solanum pennellii HOM05D000955 ORTHO05D003340 2.8e-12 75.5 88 50.0
Sopen12g030750 Solanum pennellii HOM05D000955 ORTHO05D003340 3.7e-12 75.1 83 49.4
DCAR_008793 Daucus carota HOM05D000955 ORTHO05D003340 4.8e-12 74.7 80 50.0
Gohir.D06G015800 Gossypium hirsutum HOM05D000955 ORTHO05D003340 4.8e-12 74.7 81 46.9
Manes.18G036000 Manihot esculenta HOM05D000955 ORTHO05D003340 4.8e-12 74.7 92 40.2
Nitab4.5_0000686g0110 Nicotiana tabacum HOM05D000955 ORTHO05D003340 4.8e-12 74.7 107 41.1
Nitab4.5_0006312g0020 Nicotiana tabacum HOM05D000955 ORTHO05D003340 4.8e-12 74.7 85 48.2
MBI02_g02963_MAGBIO Magnolia biondii HOM05D000955 ORTHO05D003340 6.3e-12 74.3 82 46.3
PGSC0003DMG400007985 Solanum tuberosum HOM05D000955 ORTHO05D003340 6.3e-12 74.3 82 51.2
Os07g0619200 Oryza sativa ssp. japonica HOM05D000955 ORTHO05D003340 8.2e-12 73.9 93 41.9
Rhsim07G0229000 Rhododendron simsii HOM05D000955 ORTHO05D003340 8.2e-12 73.9 80 41.2
Gohir.D06G016100 Gossypium hirsutum HOM05D000955 ORTHO05D003340 1.1e-11 73.6 81 48.1
Gorai.010G018700 Gossypium raimondii HOM05D000955 ORTHO05D003340 1.1e-11 73.6 85 47.1
Peaxi162Scf00064g00002 Petunia axillaris HOM05D000955 ORTHO05D003340 1.8e-11 72.8 91 44.0
CDE08G0020 Ceratophyllum demersum HOM05D000955 ORTHO05D003340 2.4e-11 72.4 86 41.9
HanXRQChr05g0137741 Helianthus annuus HOM05D000955 ORTHO05D003340 2.4e-11 72.4 76 50.0
HanXRQChr12g0378991 Helianthus annuus HOM05D000955 ORTHO05D003340 2.4e-11 72.4 93 41.9
Lsat_1_v5_gn_4_125520 Lactuca sativa HOM05D000955 ORTHO05D003340 2.4e-11 72.4 83 43.4
Potri.014G030700 Populus trichocarpa HOM05D000955 ORTHO05D003340 2.4e-11 72.4 86 43.0
Gohir.A06G017600 Gossypium hirsutum HOM05D000955 ORTHO05D003340 3.1e-11 72.0 81 46.9
Solyc12g088860.2 Solanum lycopersicum HOM05D000955 ORTHO05D003340 3.1e-11 72.0 79 49.4
Aqoxy5G01247 Aquilegia oxysepala HOM05D000955 ORTHO05D003340 4.1e-11 71.6 80 46.2
CAN.G1422.10 Capsicum annuum HOM05D000955 ORTHO05D003340 5.3e-11 71.2 87 44.8
CDE06G0816 Ceratophyllum demersum HOM05D000955 ORTHO05D003340 7.0e-11 70.9 86 43.0
Migut.C00586 Erythranthe guttata HOM05D000955 ORTHO05D003340 9.1e-11 70.5 88 43.2
SalBow7G0951 Salvia bowleyana HOM05D000955 ORTHO05D003340 9.1e-11 70.5 78 47.4
vmacro04455 Vaccinium macrocarpon HOM05D000955 ORTHO05D003340 1.2e-10 70.1 83 43.4
Zm00001eb100840 Zea mays HOM05D000955 ORTHO05D003340 1.2e-10 70.1 82 41.5
RcHm_v2.0_Chr6g0307621 Rosa chinensis HOM05D000955 ORTHO05D003340 1.6e-10 69.7 105 41.9
SalBow7G3079 Salvia bowleyana HOM05D000955 ORTHO05D003340 1.6e-10 69.7 66 53.0
DCAR_008791 Daucus carota HOM05D000955 ORTHO05D003340 2.0e-10 69.3 80 45.0
Migut.H00440 Erythranthe guttata HOM05D000955 ORTHO05D003340 2.0e-10 69.3 71 49.3
Eucgr.F00234 Eucalyptus grandis HOM05D000955 ORTHO05D003340 2.6e-10 68.9 80 43.8
Potri.002G127000 Populus trichocarpa HOM05D000955 ORTHO05D003340 4.5e-10 68.2 80 46.2
RcHm_v2.0_Chr6g0307791 Rosa chinensis HOM05D000955 ORTHO05D003340 5.9e-10 67.8 88 44.3
Zm00001eb109460 Zea mays HOM05D000955 ORTHO05D003340 5.9e-10 67.8 85 42.4
Eucgr.F00233 Eucalyptus grandis HOM05D000955 ORTHO05D003340 7.7e-10 67.4 80 43.8
Solyc12g088850.1 Solanum lycopersicum HOM05D000955 ORTHO05D003340 7.7e-10 67.4 86 45.3
Sopen12g030740 Solanum pennellii HOM05D000955 ORTHO05D003340 7.7e-10 67.4 86 45.3
Rhsim07G0229500 Rhododendron simsii HOM05D000955 ORTHO05D003340 1.0e-09 67.0 87 39.1
ECA246G3551 Erigeron canadensis HOM05D000955 ORTHO05D003340 1.3e-09 66.6 78 43.6
Os09g0458900 Oryza sativa ssp. japonica HOM05D000955 ORTHO05D003340 1.3e-09 66.6 82 39.0
Sabra02G0099500 Salix brachista HOM05D000955 ORTHO05D003340 1.3e-09 66.6 73 50.7
unitig_32.g10766 Utricularia gibba HOM05D000939 ORTHO05D000745 1.7e-09 66.2 81 44.4
Rhsim07G0229100 Rhododendron simsii HOM05D000955 ORTHO05D003340 2.2e-09 65.9 89 37.1
Gohir.D02G091750 Gossypium hirsutum HOM05D000955 ORTHO05D003340 2.9e-09 65.5 62 53.2
Hma1.2p1_0718F.1_g208350 Hydrangea macrophylla HOM05D000955 ORTHO05D003340 2.9e-09 65.5 100 37.0
Os03g0395200 Oryza sativa ssp. japonica HOM05D000955 ORTHO05D003340 2.9e-09 65.5 83 44.6
Rhsim07G0228900 Rhododendron simsii HOM05D000955 ORTHO05D003340 2.9e-09 65.5 73 41.1
Aqoxy6G01349 Aquilegia oxysepala HOM05D000955 ORTHO05D003340 3.8e-09 65.1 61 54.1
Sabra14G0021600 Salix brachista HOM05D000955 ORTHO05D003340 3.8e-09 65.1 80 41.2
CAN.G1518.1 Capsicum annuum HOM05D000955 ORTHO05D003340 5.0e-09 64.7 86 44.2
FAN20G1846 Fragaria x ananassa HOM05D000955 ORTHO05D003340 5.0e-09 64.7 88 43.2
Peaxi162Scf01073g00017 Petunia axillaris HOM05D000955 ORTHO05D003340 5.0e-09 64.7 79 44.3
HanXRQChr02g0039431 Helianthus annuus HOM05D000955 ORTHO05D003340 6.5e-09 64.3 80 43.8
Lsat_1_v5_gn_3_90980 Lactuca sativa HOM05D000955 ORTHO05D003340 6.5e-09 64.3 93 36.6
ECA246G2186 Erigeron canadensis HOM05D000955 ORTHO05D003340 1.1e-08 63.5 93 39.8
Migut.K00765 Erythranthe guttata HOM05D000955 ORTHO05D003340 1.1e-08 63.5 78 43.6
HanXRQChr12g0378981 Helianthus annuus HOM05D000955 ORTHO05D003340 1.5e-08 63.2 93 37.6
Sabra14G0021700 Salix brachista HOM05D000955 ORTHO05D003340 1.9e-08 62.8 85 41.2
Zm00001eb193710 Zea mays HOM05D000955 ORTHO05D003340 2.5e-08 62.4 86 39.5
CDE10G0233 Ceratophyllum demersum HOM05D000955 ORTHO05D003340 3.2e-08 62.0 79 40.5
Nn5g30251 Nelumbo nucifera HOM05D000955 ORTHO05D003340 3.2e-08 62.0 84 40.5
Peaxi162Scf01890g00029 Petunia axillaris HOM05D000955 ORTHO05D003340 3.2e-08 62.0 78 47.4
Sabra14G0021900 Salix brachista HOM05D000955 ORTHO05D003340 3.2e-08 62.0 81 43.2
RcHm_v2.0_Chr5g0048531 Rosa chinensis HOM05D000955 ORTHO05D003340 5.5e-08 61.2 88 40.9
Gorai.010G018900 Gossypium raimondii HOM05D000955 ORTHO05D003340 9.4e-08 60.5 81 42.0
Manes.18G035900 Manihot esculenta HOM05D000955 ORTHO05D003340 9.4e-08 60.5 95 40.0
Cfa004009 Carpinus fangiana HOM05D000955 ORTHO05D003340 1.2e-07 60.1 93 39.8
CiPaw.01G019000 Carya illinoinensis HOM05D000955 ORTHO05D003340 1.2e-07 60.1 86 37.2
HanXRQChr15g0473701 Helianthus annuus HOM05D000955 ORTHO05D003340 1.2e-07 60.1 93 36.6
Rhsim07G0229300 Rhododendron simsii HOM05D000955 ORTHO05D003340 1.2e-07 60.1 60 43.3
Atru.chr3.343 Acer truncatum HOM05D000955 ORTHO05D003340 1.6e-07 59.7 97 34.0
FvH4_2g34550 Fragaria vesca HOM05D000955 ORTHO05D003340 1.6e-07 59.7 88 40.9
Zm00001eb279150 Zea mays HOM05D000955 ORTHO05D003340 1.6e-07 59.7 96 36.5
CDE10G0229 Ceratophyllum demersum HOM05D000955 ORTHO05D003340 2.1e-07 59.3 72 43.1
FAN15G0770 Fragaria x ananassa HOM05D000955 ORTHO05D003340 2.1e-07 59.3 88 40.9
Manes.12G102501 Manihot esculenta HOM05D000955 ORTHO05D003340 2.1e-07 59.3 93 37.6
Manes.13G127500 Manihot esculenta HOM05D000955 ORTHO05D003340 2.1e-07 59.3 93 37.6
ECA246G1907 Erigeron canadensis HOM05D000955 ORTHO05D003340 2.7e-07 58.9 93 36.6
Rhsim07G0229200 Rhododendron simsii HOM05D000955 ORTHO05D003340 2.7e-07 58.9 65 38.5
HPP92_004230 Vanilla planifolia HOM05D000955 ORTHO05D003340 2.7e-07 58.9 83 38.6
Actinidia16499 Actinidia chinensis HOM05D000955 ORTHO05D003340 3.6e-07 58.5 82 36.6
Nitab4.5_0002501g0010 Nicotiana tabacum HOM05D000955 ORTHO05D001429 3.6e-07 58.5 73 38.4
Zm00001eb373190 Zea mays HOM05D000955 ORTHO05D003340 3.6e-07 58.5 97 37.1
Cpa.g.sc55.161 Carica papaya HOM05D000955 ORTHO05D003340 4.7e-07 58.2 79 40.5
COL.COLO4_11400 Corchorus olitorius HOM05D000955 ORTHO05D003340 4.7e-07 58.2 81 37.0
Dinv39861 Davidia involucrata HOM05D000955 ORTHO05D003340 4.7e-07 58.2 79 36.7
Nitab4.5_0000453g0120 Nicotiana tabacum HOM05D000955 ORTHO05D003340 4.7e-07 58.2 78 42.3
DCAR_010900 Daucus carota HOM05D000955 ORTHO05D003340 6.1e-07 57.8 95 34.7
MBI02_g02977_MAGBIO Magnolia biondii HOM05D000955 ORTHO05D003340 6.1e-07 57.8 69 46.4
Nitab4.5_0001024g0060 Nicotiana tabacum HOM05D000955 ORTHO05D001429 6.1e-07 57.8 73 37.0
Lj4C144G12 Lonicera japonica HOM05D002458 ORTHO05D002603 8.0e-07 57.4 82 35.4
MBI02_g02976_MAGBIO Magnolia biondii HOM05D000955 ORTHO05D003340 8.0e-07 57.4 69 46.4
Rhsim06G0048800 Rhododendron simsii HOM05D000955 ORTHO05D003340 1.0e-06 57.0 84 39.3
Gohir.D06G016150 Gossypium hirsutum HOM05D000955 ORTHO05D003340 1.4e-06 56.6 62 48.4
PGSC0003DMG400004460 Solanum tuberosum HOM05D000955 ORTHO05D001429 1.4e-06 56.6 70 41.4
Eucgr.F00235 Eucalyptus grandis HOM05D000955 ORTHO05D003340 1.8e-06 56.2 65 43.1
FAN26G2503 Fragaria x ananassa HOM05D000955 ORTHO05D003340 1.8e-06 56.2 84 38.1
MBI02_g02966_MAGBIO Magnolia biondii HOM05D000955 ORTHO05D003340 1.8e-06 56.2 82 34.1
Nn1g09537 Nelumbo nucifera HOM05D000955 ORTHO05D003340 1.8e-06 56.2 59 49.2
Oeu043559.1 Olea europaea HOM05D000955 ORTHO05D003340 1.8e-06 56.2 75 41.3
Nitab4.5_0000686g0100 Nicotiana tabacum HOM05D000955 ORTHO05D001429 2.3e-06 55.8 73 41.1
Potri.007G042700 Populus trichocarpa HOM05D000955 ORTHO05D003340 2.3e-06 55.8 82 35.4
TAR628G1637 Trochodendron aralioides HOM05D000955 ORTHO05D003340 2.3e-06 55.8 69 40.6
MBI02_g02964_MAGBIO Magnolia biondii HOM05D000955 ORTHO05D003340 3.0e-06 55.5 80 35.0
Peaxi162Scf00303g00141 Petunia axillaris HOM05D000955 ORTHO05D001429 3.0e-06 55.5 73 39.7
HPP92_016724 Vanilla planifolia HOM05D000955 ORTHO05D003340 3.0e-06 55.5 82 37.8
FAN19G2583 Fragaria x ananassa HOM05D000955 ORTHO05D003340 4.0e-06 55.1 84 38.1
FAN28G2528 Fragaria x ananassa HOM05D000955 ORTHO05D003340 4.0e-06 55.1 84 38.1
Lsat_1_v5_gn_4_125200 Lactuca sativa HOM05D000955 ORTHO05D001429 5.2e-06 54.7 73 42.5
PGSC0003DMG400023125 Solanum tuberosum HOM05D000955 ORTHO05D001429 6.7e-06 54.3 73 37.0
CSS0003971 Camellia sinensis var. sinensis HOM05D000955 ORTHO05D001429 8.8e-06 53.9 87 39.1
Cpa.g.sc49.7 Carica papaya HOM05D000955 ORTHO05D003340 8.8e-06 53.9 80 38.8
FAN27G2801 Fragaria x ananassa HOM05D000955 ORTHO05D003340 8.8e-06 53.9 88 37.5
MBI02_g02980_MAGBIO Magnolia biondii HOM05D000955 ORTHO05D003340 8.8e-06 53.9 74 41.9
RcHm_v2.0_Chr2g0105311 Rosa chinensis HOM05D000955 ORTHO05D003340 8.8e-06 53.9 82 36.6


User provided reference genes

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