Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g042040 Pisum sativum HOM05D000003 ORTHO05D000022 6.3e-78 293.9 135 100.0
Psat5g143280 Pisum sativum HOM05D000003 ORTHO05D011085 1.0e-19 100.5 118 37.3
Psat1g083000 Pisum sativum HOM05D000003 ORTHO05D015733 2.4e-16 89.4 116 37.1
Psat3g023600 Pisum sativum HOM05D000003 ORTHO05D012377 1.5e-15 86.7 124 35.5
Psat6g005280 Pisum sativum HOM05D017300 ORTHO05D000022 2.0e-15 86.3 128 33.6
PGR031G0166 Punica granatum HOM05D000155 ORTHO05D000022 3.4e-15 85.5 119 32.8
RcHm_v2.0_Chr6g0262791 Rosa chinensis HOM05D000003 ORTHO05D000022 3.4e-15 85.5 122 35.2
RcHm_v2.0_Chr5g0074971 Rosa chinensis HOM05D000003 ORTHO05D000022 2.9e-14 82.4 120 32.5
Psat6g050000 Pisum sativum HOM05D000003 ORTHO05D000022 6.4e-14 81.3 108 37.0
Psat0ss25082g0120 Pisum sativum HOM05D017489 ORTHO05D000022 1.4e-13 80.1 117 33.3
RcHm_v2.0_Chr4g0406871 Rosa chinensis HOM05D000003 ORTHO05D000004 1.4e-13 80.1 118 33.9
RcHm_v2.0_Chr5g0018821 Rosa chinensis HOM05D000003 ORTHO05D000022 2.4e-13 79.3 119 32.8
Psat7g047000 Pisum sativum HOM05D000003 ORTHO05D000022 4.2e-13 78.6 109 32.1
Psat3g018800 Pisum sativum HOM05D000003 ORTHO05D000004 5.5e-13 78.2 82 41.5
RcHm_v2.0_Chr3g0484381 Rosa chinensis HOM05D000003 ORTHO05D000022 1.2e-12 77.0 121 33.1
RcHm_v2.0_Chr2g0146161 Rosa chinensis HOM05D000003 ORTHO05D000022 2.1e-12 76.3 118 30.5
Psat7g063800 Pisum sativum HOM05D049989 ORTHO05D000022 2.7e-12 75.9 65 50.8
RcHm_v2.0_Chr4g0426941 Rosa chinensis HOM05D000003 ORTHO05D000022 6.0e-12 74.7 128 34.4
RcHm_v2.0_Chr2g0132921 Rosa chinensis HOM05D000003 ORTHO05D000022 7.9e-12 74.3 121 32.2
QL09p016348 Quercus lobata HOM05D000155 ORTHO05D000022 8.7e-11 70.9 66 43.9
Psat6g194120 Pisum sativum HOM05D000003 ORTHO05D015733 1.1e-10 70.5 83 38.6
RcHm_v2.0_Chr7g0220091 Rosa chinensis HOM05D000003 ORTHO05D000022 2.5e-10 69.3 117 31.6
Psat0s2485g0320 Pisum sativum HOM05D000224 ORTHO05D000337 4.3e-10 68.6 69 43.5
FvH4_3g30492 Fragaria vesca HOM05D000003 ORTHO05D000022 7.4e-10 67.8 121 29.8
Psat3g030560 Pisum sativum HOM05D000003 ORTHO05D000004 7.4e-10 67.8 64 50.0
QL03p010769 Quercus lobata HOM05D000155 ORTHO05D000022 7.4e-10 67.8 123 34.1
RcHm_v2.0_Chr5g0053531 Rosa chinensis HOM05D000003 ORTHO05D000004 9.6e-10 67.4 120 29.2
Psat7g059240 Pisum sativum HOM05D000003 ORTHO05D000022 2.1e-09 66.2 65 44.6
RcHm_v2.0_Chr2g0144631 Rosa chinensis HOM05D000003 ORTHO05D000022 2.1e-09 66.2 118 29.7
EL10Ac1g02112 Beta vulgaris HOM05D000003 ORTHO05D000006 2.8e-09 65.9 127 30.7
Psat5g079320 Pisum sativum HOM05D061441 ORTHO05D037359 2.8e-09 65.9 97 33.0
Atru.chr11.1243 Acer truncatum HOM05D000003 ORTHO05D000022 3.7e-09 65.5 116 29.3
QL08p061842 Quercus lobata HOM05D000003 ORTHO05D000004 3.7e-09 65.5 114 33.3
Psat4g035320 Pisum sativum HOM05D000894 ORTHO05D001833 4.8e-09 65.1 85 29.4
Thecc.04G008500 Theobroma cacao HOM05D000088 ORTHO05D000830 4.8e-09 65.1 122 31.1
Atru.chr3.2067 Acer truncatum HOM05D000003 ORTHO05D000022 6.2e-09 64.7 117 29.1
FvH4_3g33091 Fragaria vesca HOM05D000003 ORTHO05D000022 6.2e-09 64.7 142 28.9
QL10p064615 Quercus lobata HOM05D000155 ORTHO05D000022 6.2e-09 64.7 71 38.0
RcHm_v2.0_Chr5g0040021 Rosa chinensis HOM05D000003 ORTHO05D000022 6.2e-09 64.7 65 40.0
Atru.chr12.1675 Acer truncatum HOM05D000003 ORTHO05D000022 1.1e-08 63.9 116 30.2
Atru.chr9.1513 Acer truncatum HOM05D000003 ORTHO05D000022 1.4e-08 63.5 116 30.2
Lj3g0015119 Lotus japonicus HOM05D000003 ORTHO05D000022 1.4e-08 63.5 122 30.3
Psat4g044960 Pisum sativum HOM05D000003 ORTHO05D012377 2.4e-08 62.8 98 33.7
Atru.chr1.1701 Acer truncatum HOM05D000003 ORTHO05D000022 3.1e-08 62.4 116 31.9
QL04p008062 Quercus lobata HOM05D000009 ORTHO05D000008 3.1e-08 62.4 69 34.8
Atru.chr5.2276 Acer truncatum HOM05D000003 ORTHO05D000004 4.0e-08 62.0 74 43.2
FvH4_5g27995 Fragaria vesca HOM05D000003 ORTHO05D000022 5.3e-08 61.6 119 27.7
Atru.chr10.629 Acer truncatum HOM05D000003 ORTHO05D000004 6.9e-08 61.2 121 30.6
Atru.chr10.394 Acer truncatum HOM05D000003 ORTHO05D000022 9.0e-08 60.8 118 32.2
Atru.chr4.136 Acer truncatum HOM05D000003 ORTHO05D000022 9.0e-08 60.8 125 31.2
Cpa.g.sc19.281 Carica papaya HOM05D000003 ORTHO05D000022 9.0e-08 60.8 83 39.8
FvH4_2g15861 Fragaria vesca HOM05D000003 ORTHO05D000022 9.0e-08 60.8 68 38.2
RcHm_v2.0_Chr6g0291741 Rosa chinensis HOM05D000003 ORTHO05D000004 1.2e-07 60.5 127 26.0
Atru.chr12.2455 Acer truncatum HOM05D000003 ORTHO05D000022 1.5e-07 60.1 116 28.4
Atru.chr1.1484 Acer truncatum HOM05D000003 ORTHO05D000022 2.0e-07 59.7 121 32.2
Atru.chr8.829 Acer truncatum HOM05D000003 ORTHO05D000022 2.0e-07 59.7 73 38.4
arahy.Tifrunner.gnm1.ann1.I6PHI5 Arachis hypogaea HOM05D000003 ORTHO05D000022 2.0e-07 59.7 73 38.4
FvH4_2g12671 Fragaria vesca HOM05D000003 ORTHO05D000022 2.0e-07 59.7 118 30.5
PGR033G0006 Punica granatum HOM05D000162 ORTHO05D000090 2.0e-07 59.7 89 37.1
Sopen00g003380 Solanum pennellii HOM05D000155 ORTHO05D000022 2.0e-07 59.7 65 41.5
Sopen00g003540 Solanum pennellii HOM05D000003 ORTHO05D000004 2.0e-07 59.7 65 41.5
Atru.chr9.1443 Acer truncatum HOM05D000003 ORTHO05D000022 2.6e-07 59.3 120 30.0
Ciclev10021474m.g Citrus clementina HOM05D000003 ORTHO05D000022 2.6e-07 59.3 67 35.8
Psat7g156400 Pisum sativum HOM05D000003 ORTHO05D017882 2.6e-07 59.3 85 32.9
RcHm_v2.0_Chr7g0181271 Rosa chinensis HOM05D000003 ORTHO05D000022 2.6e-07 59.3 67 41.8
arahy.Tifrunner.gnm1.ann1.S50QTL Arachis hypogaea HOM05D000011 ORTHO05D002639 3.4e-07 58.9 120 32.5
Lj3g0014530 Lotus japonicus HOM05D000003 ORTHO05D000022 3.4e-07 58.9 116 26.7
RcHm_v2.0_Chr3g0484471 Rosa chinensis HOM05D000003 ORTHO05D000022 3.4e-07 58.9 66 37.9
PSO210G1737 Papaver somniferum HOM05D000003 ORTHO05D000022 4.5e-07 58.5 107 29.0
SGA_v2.0_scaffold245G44722 Striga asiatica HOM05D000155 ORTHO05D000022 4.5e-07 58.5 77 36.4
EL10Ac6g13741 Beta vulgaris HOM05D008685 ORTHO05D000022 5.8e-07 58.2 116 28.4
COL.COLO4_24957 Corchorus olitorius HOM05D003639 ORTHO05D004246 5.8e-07 58.2 66 40.9
COL.COLO4_36152 Corchorus olitorius HOM05D000003 ORTHO05D000022 5.8e-07 58.2 75 38.7
QL01p007248 Quercus lobata HOM05D000003 ORTHO05D000022 5.8e-07 58.2 67 34.3
Atru.chr13.1101 Acer truncatum HOM05D000003 ORTHO05D000022 7.6e-07 57.8 116 29.3
CSS0047653 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 7.6e-07 57.8 67 40.3
CAN.G819.9 Capsicum annuum HOM05D011052 ORTHO05D004636 7.6e-07 57.8 77 37.7
CARHR145030 Cardamine hirsuta HOM05D000003 ORTHO05D000022 7.6e-07 57.8 64 42.2
FvH4_3g27901 Fragaria vesca HOM05D000003 ORTHO05D000022 7.6e-07 57.8 118 30.5
Lj4g0025065 Lotus japonicus HOM05D000155 ORTHO05D000022 7.6e-07 57.8 73 32.9
Prupe.6G123500 Prunus persica HOM05D000003 ORTHO05D000022 7.6e-07 57.8 118 29.7
QL02p075356 Quercus lobata HOM05D000155 ORTHO05D000022 7.6e-07 57.8 101 30.7
QL07p015378 Quercus lobata HOM05D000155 ORTHO05D000022 7.6e-07 57.8 74 35.1
Sopen05g012830 Solanum pennellii HOM05D000155 ORTHO05D000022 7.6e-07 57.8 70 35.7
Lj1P685T53 Lonicera japonica HOM05D000155 ORTHO05D000022 1.0e-06 57.4 64 37.5
Lj1P688T36 Lonicera japonica HOM05D000155 ORTHO05D000022 1.0e-06 57.4 64 37.5
Prupe.7G199700 Prunus persica HOM05D000003 ORTHO05D000022 1.0e-06 57.4 117 31.6
Sopen11g007870 Solanum pennellii HOM05D000155 ORTHO05D000007 1.0e-06 57.4 65 38.5
QL10p004112 Quercus lobata HOM05D000155 ORTHO05D000022 1.3e-06 57.0 65 41.5
Sopen08g015240 Solanum pennellii HOM05D000003 ORTHO05D000004 1.3e-06 57.0 65 38.5
TWI63G0844 Tripterygium wilfordii HOM05D000013 ORTHO05D000011 1.3e-06 57.0 65 38.5
VMungo0434G0001 Vigna mungo HOM05D014548 ORTHO05D016940 1.3e-06 57.0 92 31.5
Lalb_Chr09g0330401 Lupinus albus HOM05D000155 ORTHO05D000022 1.7e-06 56.6 120 28.3
Medtr1g086740 Medicago truncatula HOM05D017489 ORTHO05D000022 1.7e-06 56.6 83 30.1
RcHm_v2.0_Chr2g0125461 Rosa chinensis HOM05D000003 ORTHO05D000022 1.7e-06 56.6 119 27.7
CARHR121910 Cardamine hirsuta HOM05D000155 ORTHO05D000022 2.2e-06 56.2 63 39.7
Lalb_Chr07g0182561 Lupinus albus HOM05D000155 ORTHO05D000022 2.2e-06 56.2 66 42.4
Phvul.006G170300 Phaseolus vulgaris HOM05D000062 ORTHO05D000043 2.2e-06 56.2 68 36.8
RcHm_v2.0_Chr1g0351011 Rosa chinensis HOM05D000003 ORTHO05D000004 2.2e-06 56.2 119 29.4
Sopen00g003390 Solanum pennellii HOM05D000003 ORTHO05D000004 2.2e-06 56.2 65 38.5
Sopen08g015460 Solanum pennellii HOM05D000155 ORTHO05D000022 2.2e-06 56.2 65 38.5
RcHm_v2.0_Chr7g0200931 Rosa chinensis HOM05D000003 ORTHO05D000022 2.9e-06 55.8 119 29.4
Atru.chr10.81 Acer truncatum HOM05D000003 ORTHO05D000004 3.8e-06 55.5 116 29.3
Lj1P687T17 Lonicera japonica HOM05D000155 ORTHO05D000022 3.8e-06 55.5 62 38.7
Sopen08g024310 Solanum pennellii HOM05D000003 ORTHO05D000006 3.8e-06 55.5 65 36.9
TPR.G27846 Trifolium pratense HOM05D009122 ORTHO05D025856 3.8e-06 55.5 80 33.8
Atru.chr7.622 Acer truncatum HOM05D000003 ORTHO05D000004 4.9e-06 55.1 66 39.4
Atru.chr7.949 Acer truncatum HOM05D000003 ORTHO05D000022 4.9e-06 55.1 69 40.6
Actinidia31833 Actinidia chinensis HOM05D000155 ORTHO05D000022 4.9e-06 55.1 68 36.8
Prupe.6G118100 Prunus persica HOM05D000003 ORTHO05D000022 4.9e-06 55.1 114 30.7
Prupe.6G201000 Prunus persica HOM05D000003 ORTHO05D000022 4.9e-06 55.1 114 30.7
TWI81G0242 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 4.9e-06 55.1 120 28.3
Actinidia31778 Actinidia chinensis HOM05D000155 ORTHO05D000022 6.5e-06 54.7 68 36.8
Lj4g0027011 Lotus japonicus HOM05D000003 ORTHO05D000022 6.5e-06 54.7 66 40.9
Lj5g0005529 Lotus japonicus HOM05D000003 ORTHO05D000022 6.5e-06 54.7 66 37.9
Prupe.4G161900 Prunus persica HOM05D000003 ORTHO05D000022 6.5e-06 54.7 114 30.7
Prupe.4G223300 Prunus persica HOM05D000279 ORTHO05D000022 6.5e-06 54.7 79 35.4
Sopen05g017830 Solanum pennellii HOM05D000004 ORTHO05D000022 6.5e-06 54.7 65 38.5
Thecc.06G025800 Theobroma cacao HOM05D000003 ORTHO05D000022 6.5e-06 54.7 121 28.9
TPR.G4340 Trifolium pratense HOM05D009122 ORTHO05D011085 6.5e-06 54.7 69 39.1
COL.COLO4_08513 Corchorus olitorius HOM05D000003 ORTHO05D000004 8.4e-06 54.3 64 34.4
PSO170G6722 Papaver somniferum HOM05D000155 ORTHO05D000022 8.4e-06 54.3 66 34.8
QL02p058259 Quercus lobata HOM05D000155 ORTHO05D000022 8.4e-06 54.3 72 40.3
QL93p0100_0664 Quercus lobata HOM05D000155 ORTHO05D000022 8.4e-06 54.3 72 40.3
Sopen05g018040 Solanum pennellii HOM05D000155 ORTHO05D000022 8.4e-06 54.3 64 39.1


User provided reference genes

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