Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g041640 Pisum sativum HOM05D009299 ORTHO05D000022 5.4e-43 177.2 84 100.0
Psat0s2945g0120 Pisum sativum HOM05D009299 ORTHO05D000022 6.4e-28 127.1 84 70.2
Psat4g211080 Pisum sativum HOM05D000003 ORTHO05D012124 2.3e-17 92.0 82 52.4
MD07G1021300 Malus domestica HOM05D000155 ORTHO05D000022 1.3e-12 76.3 79 45.6
Medtr2g041060 Medicago truncatula HOM05D009299 ORTHO05D000022 2.9e-12 75.1 78 47.4
TPR.G35736 Trifolium pratense HOM05D009299 ORTHO05D000022 3.8e-12 74.7 82 41.5
MD02G1050700 Malus domestica HOM05D000155 ORTHO05D000022 6.4e-12 73.9 77 46.8
MD13G1019000 Malus domestica HOM05D000155 ORTHO05D000022 6.4e-12 73.9 77 44.2
Medtr7g034685 Medicago truncatula HOM05D009299 ORTHO05D000022 1.4e-11 72.8 76 44.7
MD02G1021900 Malus domestica HOM05D000003 ORTHO05D037873 4.1e-11 71.2 80 41.2
Psat2g068480 Pisum sativum HOM05D009299 ORTHO05D000022 9.2e-11 70.1 72 51.4
RcHm_v2.0_Chr2g0160431 Rosa chinensis HOM05D000003 ORTHO05D000004 2.1e-10 68.9 77 41.6
RcHm_v2.0_Chr3g0453641 Rosa chinensis HOM05D000003 ORTHO05D000004 2.1e-10 68.9 77 41.6
RcHm_v2.0_Chr3g0465511 Rosa chinensis HOM05D000155 ORTHO05D000022 2.1e-10 68.9 77 41.6
RcHm_v2.0_Chr7g0185631 Rosa chinensis HOM05D000155 ORTHO05D000022 2.1e-10 68.9 77 41.6
Atru.chr2.2552 Acer truncatum HOM05D005989 ORTHO05D000022 2.7e-10 68.6 77 40.3
PSO832G3439 Papaver somniferum HOM05D005989 ORTHO05D000022 4.6e-10 67.8 79 45.6
Atru.chr5.427 Acer truncatum HOM05D000155 ORTHO05D000022 1.0e-09 66.6 77 41.6
Atru.chr11.94 Acer truncatum HOM05D005989 ORTHO05D000022 1.3e-09 66.2 77 40.3
TPR.G25752 Trifolium pratense HOM05D009299 ORTHO05D000022 1.3e-09 66.2 82 41.5
Psat5g046520 Pisum sativum HOM05D000058 ORTHO05D000255 1.7e-09 65.9 78 44.9
Psat0s1928g0080 Pisum sativum HOM05D009299 ORTHO05D000022 3.0e-09 65.1 82 43.9
Psat6g004000 Pisum sativum HOM05D000009 ORTHO05D000008 3.0e-09 65.1 82 37.8
RcHm_v2.0_Chr6g0251621 Rosa chinensis HOM05D000155 ORTHO05D000022 3.9e-09 64.7 69 42.0
Psat0s1775g0320 Pisum sativum HOM05D005989 ORTHO05D000022 5.1e-09 64.3 82 36.6
CARHR181910 Cardamine hirsuta HOM05D000003 ORTHO05D000022 6.6e-09 63.9 62 45.2
Medtr3g041640 Medicago truncatula HOM05D009299 ORTHO05D016348 6.6e-09 63.9 80 41.2
Atru.chr12.41 Acer truncatum HOM05D000003 ORTHO05D000022 1.5e-08 62.8 78 42.3
Atru.chr8.1018 Acer truncatum HOM05D000003 ORTHO05D000004 1.5e-08 62.8 77 44.2
FvH4_4g01331 Fragaria vesca HOM05D005989 ORTHO05D000022 1.5e-08 62.8 74 39.2
Lalb_Chr21g0306271 Lupinus albus HOM05D005989 ORTHO05D000022 1.9e-08 62.4 74 40.5
Psat4g016640 Pisum sativum HOM05D005989 ORTHO05D000022 1.9e-08 62.4 82 45.1
RcHm_v2.0_Chr6g0264461 Rosa chinensis HOM05D005989 ORTHO05D000022 1.9e-08 62.4 77 41.6
RcHm_v2.0_Chr6g0263381 Rosa chinensis HOM05D000155 ORTHO05D000022 2.5e-08 62.0 69 42.0
Atru.chr1.2142 Acer truncatum HOM05D000003 ORTHO05D000022 3.3e-08 61.6 77 42.9
Atru.chr1.2293 Acer truncatum HOM05D000003 ORTHO05D000004 3.3e-08 61.6 77 42.9
CARHR105380 Cardamine hirsuta HOM05D000003 ORTHO05D000022 3.3e-08 61.6 55 47.3
Medtr3g052720 Medicago truncatula HOM05D000001 ORTHO05D000003 3.3e-08 61.6 67 47.8
Atru.chr4.468 Acer truncatum HOM05D000003 ORTHO05D000004 4.3e-08 61.2 55 52.7
Lalb_Chr02g0151681 Lupinus albus HOM05D000155 ORTHO05D000022 4.3e-08 61.2 76 39.5
RcHm_v2.0_Chr4g0393351 Rosa chinensis HOM05D000155 ORTHO05D000022 4.3e-08 61.2 69 37.7
Atru.chr4.575 Acer truncatum HOM05D000003 ORTHO05D000651 5.6e-08 60.8 77 42.9
RcHm_v2.0_Chr2g0167951 Rosa chinensis HOM05D005989 ORTHO05D000022 5.6e-08 60.8 79 39.2
RcHm_v2.0_Chr5g0000531 Rosa chinensis HOM05D000985 ORTHO05D011902 5.6e-08 60.8 76 42.1
PSO478G5274 Papaver somniferum HOM05D000003 ORTHO05D000651 7.3e-08 60.5 71 38.0
RcHm_v2.0_Chr2g0133661 Rosa chinensis HOM05D000155 ORTHO05D000022 7.3e-08 60.5 79 38.0
CARHR111550 Cardamine hirsuta HOM05D000003 ORTHO05D000022 9.6e-08 60.1 57 45.6
PSO063G3018 Papaver somniferum HOM05D000003 ORTHO05D000651 9.6e-08 60.1 67 44.8
Atru.chr1.1763 Acer truncatum HOM05D000003 ORTHO05D000022 1.2e-07 59.7 73 42.5
Atru.chr3.1897 Acer truncatum HOM05D000003 ORTHO05D000651 1.2e-07 59.7 77 41.6
Psat1g135040 Pisum sativum HOM05D005572 ORTHO05D007494 1.2e-07 59.7 45 66.7
Lj3g0015119 Lotus japonicus HOM05D000003 ORTHO05D000022 1.6e-07 59.3 77 36.4
RcHm_v2.0_Chr3g0455401 Rosa chinensis HOM05D000003 ORTHO05D000004 1.6e-07 59.3 53 45.3
RcHm_v2.0_Chr6g0258241 Rosa chinensis HOM05D005989 ORTHO05D000022 1.6e-07 59.3 77 40.3
Medtr0285s0020 Medicago truncatula HOM05D009299 ORTHO05D000022 2.1e-07 58.9 59 45.8
PSO478G1619 Papaver somniferum HOM05D000003 ORTHO05D000004 2.1e-07 58.9 71 38.0
RcHm_v2.0_Chr3g0472841 Rosa chinensis HOM05D000155 ORTHO05D000022 2.1e-07 58.9 65 41.5
Atru.chr10.504 Acer truncatum HOM05D000003 ORTHO05D000022 2.8e-07 58.5 77 41.6
COL.COLO4_07368 Corchorus olitorius HOM05D000003 ORTHO05D000022 3.6e-07 58.2 78 30.8
FvH4_3g24991 Fragaria vesca HOM05D005989 ORTHO05D000022 3.6e-07 58.2 77 40.3
PSO675G4652 Papaver somniferum HOM05D000003 ORTHO05D000651 3.6e-07 58.2 81 34.6
RcHm_v2.0_Chr1g0352021 Rosa chinensis HOM05D005989 ORTHO05D000022 3.6e-07 58.2 77 40.3
Medtr8g015630 Medicago truncatula HOM05D000003 ORTHO05D000004 4.7e-07 57.8 60 50.0
PSO206G0010 Papaver somniferum HOM05D000003 ORTHO05D000651 4.7e-07 57.8 73 37.0
PSO478G4826 Papaver somniferum HOM05D000003 ORTHO05D000651 4.7e-07 57.8 69 39.1
Prupe.8G032200 Prunus persica HOM05D000003 ORTHO05D000004 4.7e-07 57.8 76 39.5
Atru.chr3.1667 Acer truncatum HOM05D000003 ORTHO05D000004 6.2e-07 57.4 77 41.6
Atru.chr7.152 Acer truncatum HOM05D000003 ORTHO05D000022 6.2e-07 57.4 76 42.1
arahy.Tifrunner.gnm1.ann1.I6PHI5 Arachis hypogaea HOM05D000003 ORTHO05D000022 6.2e-07 57.4 67 38.8
CARHR035340 Cardamine hirsuta HOM05D000003 ORTHO05D000022 6.2e-07 57.4 55 43.6
CARHR104870 Cardamine hirsuta HOM05D000003 ORTHO05D000022 6.2e-07 57.4 68 42.6
CARHR145030 Cardamine hirsuta HOM05D000003 ORTHO05D000022 6.2e-07 57.4 59 42.4
PSO063G5817 Papaver somniferum HOM05D000003 ORTHO05D000651 6.2e-07 57.4 69 37.7
Psat7g047000 Pisum sativum HOM05D000003 ORTHO05D000022 6.2e-07 57.4 57 50.9
RcHm_v2.0_Chr2g0129631 Rosa chinensis HOM05D005989 ORTHO05D000651 6.2e-07 57.4 77 40.3
RcHm_v2.0_Chr3g0472791 Rosa chinensis HOM05D000155 ORTHO05D000022 6.2e-07 57.4 69 34.8
SGA_v2.0_scaffold147G36377 Striga asiatica HOM05D000003 ORTHO05D000022 6.2e-07 57.4 59 42.4
Medtr7g071850 Medicago truncatula HOM05D009351 ORTHO05D011822 8.1e-07 57.0 66 47.0
Atru.chr12.2056 Acer truncatum HOM05D000003 ORTHO05D000022 1.1e-06 56.6 76 40.8
CARHR121910 Cardamine hirsuta HOM05D000155 ORTHO05D000022 1.1e-06 56.6 59 44.1
MBI01_g40633_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 1.1e-06 56.6 69 43.5
PGR119G2417 Punica granatum HOM05D000003 ORTHO05D000004 1.1e-06 56.6 69 39.1
QL03p062046 Quercus lobata HOM05D000155 ORTHO05D000022 1.1e-06 56.6 50 46.0
RcHm_v2.0_Chr4g0409421 Rosa chinensis HOM05D005989 ORTHO05D000022 1.1e-06 56.6 74 41.9
Atru.chr2.1816 Acer truncatum HOM05D000003 ORTHO05D000022 1.4e-06 56.2 77 40.3
PSO063G2465 Papaver somniferum HOM05D005989 ORTHO05D000022 1.4e-06 56.2 80 38.8
PSO541G4268 Papaver somniferum HOM05D005989 ORTHO05D000022 1.4e-06 56.2 79 38.0
PSO675G1101 Papaver somniferum HOM05D000003 ORTHO05D000651 1.4e-06 56.2 68 39.7
PSO478G1629 Papaver somniferum HOM05D000003 ORTHO05D000651 1.8e-06 55.8 72 36.1
PSO578G0006 Papaver somniferum HOM05D000003 ORTHO05D000004 1.8e-06 55.8 85 36.5
RcHm_v2.0_Chr3g0462451 Rosa chinensis HOM05D005989 ORTHO05D000022 1.8e-06 55.8 60 41.7
AT5G42905 Arabidopsis thaliana HOM05D000003 ORTHO05D000022 2.4e-06 55.5 68 39.7
PSO063G4680 Papaver somniferum HOM05D000003 ORTHO05D000004 2.4e-06 55.5 69 37.7
PSO339G2674 Papaver somniferum HOM05D000003 ORTHO05D000651 2.4e-06 55.5 59 44.1
MBI15_g33045_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 3.1e-06 55.1 68 41.2
PSO063G0491 Papaver somniferum HOM05D000003 ORTHO05D000004 3.1e-06 55.1 73 35.6
PSO206G0016 Papaver somniferum HOM05D000003 ORTHO05D000004 3.1e-06 55.1 81 34.6
FvH4_6g51131 Fragaria vesca HOM05D000155 ORTHO05D000022 4.0e-06 54.7 69 34.8
Glyma.15G087900 Glycine max HOM05D000062 ORTHO05D000043 4.0e-06 54.7 69 40.6
Os06g0683500 Oryza sativa ssp. japonica HOM05D000155 ORTHO05D000022 4.0e-06 54.7 55 43.6
PSO063G5246 Papaver somniferum HOM05D000003 ORTHO05D000651 4.0e-06 54.7 73 37.0
PSO384G3751 Papaver somniferum HOM05D000003 ORTHO05D000651 4.0e-06 54.7 81 34.6
PSO561G0028 Papaver somniferum HOM05D000003 ORTHO05D000651 4.0e-06 54.7 73 34.2
Aqoxy4G00708 Aquilegia oxysepala HOM05D000003 ORTHO05D000651 5.2e-06 54.3 82 34.1
PSO384G0855 Papaver somniferum HOM05D012095 ORTHO05D013621 5.2e-06 54.3 78 38.5
Psat5g035200 Pisum sativum HOM05D009299 ORTHO05D000022 5.2e-06 54.3 36 55.6
PSO017G2521 Papaver somniferum HOM05D000003 ORTHO05D000651 6.9e-06 53.9 81 33.3
PSO418G0004 Papaver somniferum HOM05D000003 ORTHO05D000004 6.9e-06 53.9 70 37.1
AUR62019983 Chenopodium quinoa HOM05D000577 ORTHO05D001093 9.0e-06 53.5 77 40.3
PSO675G8111 Papaver somniferum HOM05D000003 ORTHO05D000004 9.0e-06 53.5 69 36.2
PSO754G0030 Papaver somniferum HOM05D000003 ORTHO05D000651 9.0e-06 53.5 69 36.2
PGSC0003DMG400005085 Solanum tuberosum HOM05D000155 ORTHO05D000022 9.0e-06 53.5 61 44.3


User provided reference genes

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