Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g034920 Pisum sativum HOM05D005024 ORTHO05D006396 9.8e-308 1059.3 535 100.0
Medtr3g105400 Medicago truncatula HOM05D005024 ORTHO05D006396 1.4e-261 906.0 528 87.3
Ca_15807_v3 Cicer arietinum L. HOM05D005024 ORTHO05D006396 1.2e-260 902.9 538 85.5
Glyma.06G058100 Glycine max HOM05D005024 ORTHO05D006396 2.2e-251 872.1 540 81.9
VMungo1309G0309 Vigna mungo HOM05D005024 ORTHO05D006396 9.1e-245 850.1 540 80.2
Lj1g0011589 Lotus japonicus HOM05D005024 ORTHO05D006396 1.0e-243 846.7 539 80.7
Glyma.04G057500 Glycine max HOM05D005024 ORTHO05D006396 1.9e-234 815.8 506 82.0
arahy.Tifrunner.gnm1.ann1.JR430F Arachis hypogaea HOM05D005024 ORTHO05D006396 1.3e-230 803.1 538 76.8
arahy.Tifrunner.gnm1.ann1.Q4799Z Arachis hypogaea HOM05D005024 ORTHO05D006396 3.1e-229 798.5 538 76.6
Phvul.009G083900 Phaseolus vulgaris HOM05D005024 ORTHO05D006396 9.5e-218 760.4 471 81.1
Lalb_Chr08g0244691 Lupinus albus HOM05D005024 ORTHO05D006396 7.5e-215 750.7 509 76.8
Lalb_Chr23g0268051 Lupinus albus HOM05D005024 ORTHO05D006396 2.4e-213 745.7 509 75.8
Atru.chr7.1825 Acer truncatum HOM05D005024 ORTHO05D006396 8.9e-208 727.2 545 68.3
Manes.16G087100 Manihot esculenta HOM05D005024 ORTHO05D006396 8.9e-208 727.2 551 67.9
Manes.03G056600 Manihot esculenta HOM05D005024 ORTHO05D006396 9.2e-205 717.2 548 67.7
Ciclev10007934m.g Citrus clementina HOM05D005024 ORTHO05D006396 3.9e-203 711.8 546 66.5
Potri.006G218800 Populus trichocarpa HOM05D005024 ORTHO05D006396 5.6e-202 708.0 547 67.1
CSS0015942 Camellia sinensis var. sinensis HOM05D005024 ORTHO05D006396 4.7e-201 704.9 552 65.0
Eucgr.C00744 Eucalyptus grandis HOM05D005024 ORTHO05D006396 1.8e-200 703.0 547 67.5
TWI63G0562 Tripterygium wilfordii HOM05D005024 ORTHO05D006396 1.2e-199 700.3 551 66.4
MD15G1047400 Malus domestica HOM05D005024 ORTHO05D006396 2.0e-199 699.5 546 67.6
RcHm_v2.0_Chr6g0304801 Rosa chinensis HOM05D005024 ORTHO05D006396 2.6e-199 699.1 544 66.0
TWI34G1336 Tripterygium wilfordii HOM05D005024 ORTHO05D006396 2.9e-198 695.7 540 67.0
FvH4_2g36960 Fragaria vesca HOM05D005024 ORTHO05D006396 2.4e-197 692.6 544 65.8
MD08G1046400 Malus domestica HOM05D005024 ORTHO05D006396 1.1e-194 683.7 564 64.5
Duzib150G0504 Durio zibethinus HOM05D005024 ORTHO05D006396 1.6e-193 679.9 547 64.2
Duzib168G0917 Durio zibethinus HOM05D005024 ORTHO05D006396 2.8e-193 679.1 548 64.4
Gohir.D07G018500 Gossypium hirsutum HOM05D005024 ORTHO05D006396 8.1e-193 677.6 543 64.5
Gorai.001G019200 Gossypium raimondii HOM05D005024 ORTHO05D006396 1.8e-192 676.4 543 64.6
CiPaw.15G090700 Carya illinoinensis HOM05D005024 ORTHO05D006396 7.5e-191 671.0 511 67.7
FAN15G2531 Fragaria x ananassa HOM05D005024 ORTHO05D006396 1.3e-190 670.2 592 60.1
Nn8g38600 Nelumbo nucifera HOM05D005024 ORTHO05D006396 2.2e-190 669.5 549 63.2
FAN27G2149 Fragaria x ananassa HOM05D005024 ORTHO05D006396 3.2e-189 665.6 581 60.9
Gohir.A07G018700 Gossypium hirsutum HOM05D005024 ORTHO05D006396 2.7e-188 662.5 543 63.4
FAN20G2081 Fragaria x ananassa HOM05D005024 ORTHO05D006396 4.6e-188 661.8 594 59.9
Gohir.A05G037800 Gossypium hirsutum HOM05D005024 ORTHO05D006396 2.8e-185 652.5 546 61.5
Dinv41847 Davidia involucrata HOM05D005024 ORTHO05D006396 4.0e-184 648.7 519 65.1
PSO401G0002 Papaver somniferum HOM05D005024 ORTHO05D006396 9.9e-183 644.0 559 60.6
ClCG08G009730 Citrullus lanatus HOM05D005024 ORTHO05D006396 1.1e-181 640.6 569 61.9
PSO789G0001 Papaver somniferum HOM05D005024 ORTHO05D006396 3.2e-181 639.0 561 60.4
Prupe.1G401800 Prunus persica HOM05D005024 ORTHO05D006396 3.5e-180 635.6 546 63.4
MELO3C011496.2 Cucumis melo HOM05D005024 ORTHO05D006396 7.8e-180 634.4 561 60.6
Gorai.009G039800 Gossypium raimondii HOM05D005024 ORTHO05D006396 2.3e-179 632.9 537 61.1
PSO724G1181 Papaver somniferum HOM05D005024 ORTHO05D006396 2.3e-179 632.9 558 59.3
Sed0007384 Sechium edule HOM05D005024 ORTHO05D006396 1.5e-178 630.2 594 58.4
Cc08_g06760 Coffea canephora HOM05D005024 ORTHO05D006396 1.9e-178 629.8 557 60.3
Sabra06G0168600 Salix brachista HOM05D005024 ORTHO05D006396 3.3e-178 629.0 565 60.5
PGR142G1044 Punica granatum HOM05D005024 ORTHO05D006396 1.2e-175 620.5 551 61.2
Gorai.004G286000 Gossypium raimondii HOM05D005024 ORTHO05D006396 2.4e-173 612.8 548 59.9
Gohir.D08G268300 Gossypium hirsutum HOM05D005024 ORTHO05D006396 4.2e-173 612.1 548 59.7
COL.COLO4_21162 Corchorus olitorius HOM05D005024 ORTHO05D006396 2.3e-171 606.3 548 59.3
MSTRG.11771 Avicennia marina HOM05D005024 ORTHO05D006396 6.6e-171 604.7 553 59.1
Migut.A00327 Erythranthe guttata HOM05D005024 ORTHO05D006396 1.5e-170 603.6 544 60.5
DCAR_001244 Daucus carota HOM05D005024 ORTHO05D006396 3.3e-170 602.4 554 57.9
HanXRQChr03g0067181 Helianthus annuus HOM05D005024 ORTHO05D006396 7.3e-170 601.3 528 61.4
Nitab4.5_0004346g0050 Nicotiana tabacum HOM05D005024 ORTHO05D006396 4.5e-167 592.0 552 59.6
SalBow4G3344 Salvia bowleyana HOM05D005024 ORTHO05D006396 5.8e-167 591.7 582 55.8
GSVIVG01035495001 Vitis vinifera HOM05D005024 ORTHO05D006396 6.0e-164 581.6 448 66.7
Sc23g0006070 Simmondsia chinensis HOM05D005024 ORTHO05D006396 1.3e-163 580.5 549 56.8
Oeu045334.2 Olea europaea HOM05D005024 ORTHO05D006396 1.9e-162 576.6 587 55.0
Aqoxy4G00037 Aquilegia oxysepala HOM05D005024 ORTHO05D006396 2.8e-161 572.8 495 60.4
Gohir.D05G039300 Gossypium hirsutum HOM05D005024 ORTHO05D006396 9.9e-159 564.3 537 56.4
CsaV3_6G031850 Cucumis sativus L. HOM05D005024 ORTHO05D006396 2.9e-158 562.8 551 57.0
Nitab4.5_0000508g0040 Nicotiana tabacum HOM05D005024 ORTHO05D006396 1.4e-157 560.5 544 57.5
Os09g0440200 Oryza sativa ssp. japonica HOM05D005024 ORTHO05D006396 4.8e-153 545.4 545 53.2
ECA240G2599 Erigeron canadensis HOM05D005024 ORTHO05D006396 6.2e-153 545.0 481 59.0
MSTRG.25847 Avicennia marina HOM05D005024 ORTHO05D006396 1.8e-152 543.5 542 54.6
Zm00001eb314080 Zea mays HOM05D005024 ORTHO05D006396 9.0e-152 541.2 552 51.3
AT2G26270 Arabidopsis thaliana HOM05D005024 ORTHO05D006396 2.0e-151 540.0 535 54.0
THA.LOC104819895 Tarenaya hassleriana HOM05D005024 ORTHO05D006396 3.4e-151 539.3 532 54.1
CiPaw.05G157300 Carya illinoinensis HOM05D005024 ORTHO05D006396 4.5e-151 538.9 548 56.2
Solyc08g067240.4 Solanum lycopersicum HOM05D005024 ORTHO05D006396 8.4e-150 534.6 546 55.9
CARHR115110 Cardamine hirsuta HOM05D005024 ORTHO05D006396 5.5e-149 531.9 527 53.7
Sopen08g021170 Solanum pennellii HOM05D005024 ORTHO05D006396 9.3e-149 531.2 450 61.3
Sp4g06550 Schrenkiella parvula HOM05D005024 ORTHO05D006396 3.9e-147 525.8 533 52.9
A04p20310 Brassica napus HOM05D005024 ORTHO05D006396 2.2e-145 520.0 543 52.3
BraA04t17610Z Brassica rapa HOM05D005024 ORTHO05D006396 2.2e-145 520.0 543 52.3
Lsat_1_v5_gn_7_59161 Lactuca sativa HOM05D005024 ORTHO05D006396 4.1e-144 515.8 547 54.3
BcaB06g28091 Brassica carinata HOM05D005024 ORTHO05D006396 4.5e-143 512.3 551 51.5
Cpa.g.sc82.16 Carica papaya HOM05D005024 ORTHO05D006396 6.5e-142 508.4 413 63.4
SEGI_27832 Sequoiadendron giganteum HOM05D005024 ORTHO05D006396 8.5e-142 508.1 560 51.4
BcaC02g08288 Brassica carinata HOM05D005024 ORTHO05D006396 4.2e-141 505.8 550 53.3
C04p56010 Brassica napus HOM05D005024 ORTHO05D006396 9.3e-141 504.6 550 53.3
BolC4t27134H Brassica oleracea HOM05D005024 ORTHO05D006396 9.3e-141 504.6 550 53.3
MBI19_g09934_MAGBIO Magnolia biondii HOM05D005024 ORTHO05D006396 3.3e-138 496.1 550 50.2
Aa31LG5G9530 Aethionema arabicum HOM05D005024 ORTHO05D006396 4.8e-137 492.3 556 50.5
ECA236G2474 Erigeron canadensis HOM05D005024 ORTHO05D006396 2.9e-134 483.0 535 49.2
EL10Ac2g02404 Beta vulgaris HOM05D005024 ORTHO05D006396 8.5e-134 481.5 558 49.3
Lj7C207G3 Lonicera japonica HOM05D005024 ORTHO05D006396 7.2e-133 478.4 507 54.0
Thecc.09G065700 Theobroma cacao HOM05D005024 ORTHO05D006396 3.6e-132 476.1 386 63.0
TAR624G0706 Trochodendron aralioides HOM05D005024 ORTHO05D006396 1.8e-131 473.8 448 58.3
Gohir.A08G247100 Gossypium hirsutum HOM05D005024 ORTHO05D006396 3.3e-130 469.5 433 58.4
HanXRQChr05g0136401 Helianthus annuus HOM05D005024 ORTHO05D006396 2.4e-128 463.4 583 46.3
THA.LOC104810953 Tarenaya hassleriana HOM05D005024 ORTHO05D006396 3.4e-127 459.5 547 48.3
AL5G21960 Arabidopsis lyrata HOM05D005024 ORTHO05D006396 1.4e-125 454.1 565 47.1
PGSC0003DMG400007379 Solanum tuberosum HOM05D005024 ORTHO05D006396 5.5e-125 452.2 362 64.4
AT3G43930 Arabidopsis thaliana HOM05D005024 ORTHO05D006396 2.7e-124 449.9 543 47.9
Ah.07g205360 Amaranthus hybridus HOM05D005024 ORTHO05D006396 3.5e-119 433.0 526 48.5
Peaxi162Scf00922g00210 Petunia axillaris HOM05D005024 ORTHO05D006396 1.3e-118 431.0 449 54.1
BcaB08g35274 Brassica carinata HOM05D005024 ORTHO05D006396 8.0e-116 421.8 504 48.4
ATR0053G058 Amborella trichopoda HOM05D005024 ORTHO05D006396 1.4e-115 421.0 463 50.1
Thhalv10011063m.g Eutrema salsugineum HOM05D005024 ORTHO05D006396 9.7e-114 414.8 544 46.1
SGA_v2.0_scaffold147G36313 Striga asiatica HOM05D005024 ORTHO05D006396 1.3e-113 414.5 478 49.4
TPR.G31221 Trifolium pratense HOM05D005024 ORTHO05D006396 4.8e-113 412.5 240 87.9
SMO169G0310 Selaginella moellendorffii HOM05D005024 ORTHO05D006396 1.1e-112 411.4 504 46.2
Carub.0004s0614 Capsella rubella HOM05D005024 ORTHO05D006396 1.0e-107 394.8 415 53.0
Rhsim06G0092200 Rhododendron simsii HOM05D005024 ORTHO05D006396 2.3e-107 393.7 471 48.2
Thhalv10001999m.g Eutrema salsugineum HOM05D005024 ORTHO05D006396 1.2e-106 391.3 411 51.6
AagrBONN_evm.TU.Sc2ySwM_228.2412 Anthoceros agrestis HOM05D005024 ORTHO05D006396 3.4e-106 389.8 520 41.7
Pp3c6_19110 Physcomitrium patens HOM05D005024 ORTHO05D006396 4.4e-106 389.4 511 45.4
Oeu030211.1 Olea europaea HOM05D005024 ORTHO05D006396 8.3e-105 385.2 474 48.5
HPP92_013024 Vanilla planifolia HOM05D005024 ORTHO05D006396 1.7e-102 377.5 430 48.4
Haze_18325 Corylus avellana HOM05D005024 ORTHO05D006396 2.4e-96 357.1 437 49.0
CiPaw.05G156800 Carya illinoinensis HOM05D005024 ORTHO05D006396 8.6e-94 348.6 263 68.4
Pp3c3_23860 Physcomitrium patens HOM05D005024 ORTHO05D006396 1.0e-91 341.7 562 40.6
CBR_g17947 Chara braunii HOM05D005024 ORTHO05D006396 1.2e-90 338.2 553 38.3
Lsat_1_v5_gn_8_70380 Lactuca sativa HOM05D005024 ORTHO05D006396 4.9e-89 332.8 452 46.2
SHI28014 Sapria himalayana HOM05D005024 ORTHO05D006396 6.0e-87 325.9 394 47.0
vmacro21130 Vaccinium macrocarpon HOM05D005024 ORTHO05D006396 9.8e-82 308.5 307 53.7
AUR62020277 Chenopodium quinoa HOM05D005024 ORTHO05D006396 4.9e-81 306.2 438 42.5
Rhsim06G0128300 Rhododendron simsii HOM05D005024 ORTHO05D006396 1.5e-77 294.7 369 45.0
AUR62037728 Chenopodium quinoa HOM05D005024 ORTHO05D006396 1.6e-76 291.2 281 53.4
CDE07G0506 Ceratophyllum demersum HOM05D005024 ORTHO05D006396 6.4e-65 252.7 348 44.0
unitig_46.g18535 Utricularia gibba HOM05D005024 ORTHO05D006396 4.2e-64 250.0 356 45.8
TPR.G3563 Trifolium pratense HOM05D005024 ORTHO05D006396 3.4e-58 230.3 127 89.8
Carub.0005s0971 Capsella rubella HOM05D005024 ORTHO05D006396 3.5e-47 193.7 197 52.8
unitig_46.g18534 Utricularia gibba HOM05D005024 ORTHO05D006396 1.0e-46 192.2 149 65.1
CAN.G348.11 Capsicum annuum HOM05D005024 ORTHO05D006396 1.3e-44 185.3 307 39.1
TPR.G26130 Trifolium pratense HOM05D005024 ORTHO05D006396 1.5e-34 151.8 97 76.3
TPR.G26129 Trifolium pratense HOM05D005024 ORTHO05D006396 1.2e-31 142.1 91 82.4
SMO336G0001 Selaginella moellendorffii HOM05D005024 ORTHO05D006396 7.4e-29 132.9 223 34.5
PSO198G0133 Papaver somniferum HOM05D005024 ORTHO05D006396 3.2e-24 117.5 82 69.5
SHI08483 Sapria himalayana HOM05D005024 ORTHO05D006396 4.6e-23 113.6 211 34.1
Cpa.g.sc82.17 Carica papaya HOM05D005024 ORTHO05D006396 6.7e-22 109.8 71 76.1
AUR62037727 Chenopodium quinoa HOM05D005024 ORTHO05D006396 5.7e-21 106.7 69 76.8
AUR62020278 Chenopodium quinoa HOM05D005024 ORTHO05D006396 1.7e-20 105.1 68 77.9
CBR_g899 Chara braunii HOM05D005024 ORTHO05D006396 1.2e-18 99.0 177 35.0
GSVIVG01035496001 Vitis vinifera HOM05D005024 ORTHO05D006396 2.9e-17 94.4 59 79.7
Carub.0004s0613 Capsella rubella HOM05D005024 ORTHO05D006396 1.6e-15 88.6 85 54.1
ATR0053G014 Amborella trichopoda HOM05D005024 ORTHO05D006396 6.1e-15 86.7 61 68.9
Haze_18329 Corylus avellana HOM05D001982 ORTHO05D008035 1.7e-12 78.6 70 62.9
QL02p017308 Quercus lobata HOM05D005024 ORTHO05D006396 2.5e-08 64.7 69 53.6
PGR042G0290 Punica granatum HOM05D001245 ORTHO05D004475 4.2e-08 63.9 90 36.7
Psat6g040520 Pisum sativum HOM05D001245 ORTHO05D004475 1.2e-07 62.4 98 35.7
AL2G37520 Arabidopsis lyrata HOM05D001245 ORTHO05D004475 1.6e-07 62.0 87 37.9
CANSAT25G1503 Cannabis sativa HOM05D001245 ORTHO05D004475 1.6e-07 62.0 90 35.6
TPR.G30550 Trifolium pratense HOM05D001245 ORTHO05D004475 1.6e-07 62.0 98 35.7
Atru.chr13.1560 Acer truncatum HOM05D001245 ORTHO05D004475 2.1e-07 61.6 96 34.4
Mapoly0158s0032 Marchantia polymorpha HOM05D001245 ORTHO05D004475 2.1e-07 61.6 88 34.1
THA.LOC104810225 Tarenaya hassleriana HOM05D001245 ORTHO05D004475 2.1e-07 61.6 87 36.8
AT1G77320 Arabidopsis thaliana HOM05D001245 ORTHO05D004475 3.6e-07 60.8 87 37.9
Glyma.16G005600 Glycine max HOM05D001245 ORTHO05D004475 3.6e-07 60.8 98 34.7
THA.LOC104800232 Tarenaya hassleriana HOM05D001245 ORTHO05D004475 3.6e-07 60.8 87 36.8
CBR_g37446 Chara braunii HOM05D001245 ORTHO05D004475 4.7e-07 60.5 75 40.0
Sp5g32500 Schrenkiella parvula HOM05D001245 ORTHO05D004475 6.1e-07 60.1 87 36.8
CSS0013013 Camellia sinensis var. sinensis HOM05D001245 ORTHO05D004475 8.0e-07 59.7 163 27.6
CSS0038833 Camellia sinensis var. sinensis HOM05D001245 ORTHO05D004475 8.0e-07 59.7 163 27.6
Medtr7g090980 Medicago truncatula HOM05D001245 ORTHO05D004475 8.0e-07 59.7 90 35.6
Manes.02G168200 Manihot esculenta HOM05D001245 ORTHO05D004475 1.0e-06 59.3 90 33.3
CANSAT80G2764 Cannabis sativa HOM05D001245 ORTHO05D004475 1.4e-06 58.9 93 32.3
CARHR070810 Cardamine hirsuta HOM05D001245 ORTHO05D004475 1.4e-06 58.9 89 38.2
PSO170G6194 Papaver somniferum HOM05D001245 ORTHO05D004475 1.8e-06 58.5 90 35.6
Phvul.002G078200 Phaseolus vulgaris HOM05D001245 ORTHO05D004475 2.3e-06 58.2 98 32.7
Lj1g0014366 Lotus japonicus HOM05D001245 ORTHO05D004475 3.0e-06 57.8 98 34.7
Nn1g08963 Nelumbo nucifera HOM05D001245 ORTHO05D004475 3.0e-06 57.8 90 34.4
Oeu009633.1 Olea europaea HOM05D001245 ORTHO05D004475 3.0e-06 57.8 87 34.5
PSO528G0248 Papaver somniferum HOM05D001245 ORTHO05D004475 3.0e-06 57.8 87 36.8
Carub.0002s2420 Capsella rubella HOM05D001245 ORTHO05D004475 3.9e-06 57.4 87 35.6
SGA_v2.0_scaffold354G49742 Striga asiatica HOM05D001245 ORTHO05D004475 3.9e-06 57.4 95 31.6
Thhalv10018076m.g Eutrema salsugineum HOM05D001245 ORTHO05D004475 5.2e-06 57.0 87 36.8
FvH4_2g27821 Fragaria vesca HOM05D001245 ORTHO05D004475 5.2e-06 57.0 168 24.4
Medtr1g029630 Medicago truncatula HOM05D001245 ORTHO05D004475 5.2e-06 57.0 98 33.7
Zm00001eb091010 Zea mays HOM05D001245 ORTHO05D004475 5.2e-06 57.0 87 36.8
Migut.N01819 Erythranthe guttata HOM05D001245 ORTHO05D004475 6.7e-06 56.6 90 31.1
Duzib093G0162 Durio zibethinus HOM05D001245 ORTHO05D004475 8.8e-06 56.2 90 32.2
Phvul.001G070600 Phaseolus vulgaris HOM05D001245 ORTHO05D004475 8.8e-06 56.2 95 33.7
QL09p032547 Quercus lobata HOM05D001245 ORTHO05D004475 8.8e-06 56.2 95 32.6


User provided reference genes

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