Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g031480 Pisum sativum HOM05D005054 ORTHO05D005948 1.7e-117 426.0 214 100.0
Medtr3g106570 Medicago truncatula HOM05D005054 ORTHO05D005948 5.5e-92 341.3 186 91.9
TPR.G3145 Trifolium pratense HOM05D005054 ORTHO05D005948 2.1e-91 339.3 187 90.9
Ca_15755_v3 Cicer arietinum L. HOM05D005054 ORTHO05D005948 1.3e-90 336.7 186 90.9
Lalb_Chr23g0268431 Lupinus albus HOM05D005054 ORTHO05D005948 4.1e-87 325.1 190 86.8
Glyma.06G066400 Glycine max HOM05D005054 ORTHO05D005948 5.3e-87 324.7 186 86.0
Glyma.04G065200 Glycine max HOM05D005054 ORTHO05D005948 6.9e-87 324.3 186 86.0
Phvul.009G091300 Phaseolus vulgaris HOM05D005054 ORTHO05D005948 6.9e-87 324.3 186 86.0
Lalb_Chr08g0244231 Lupinus albus HOM05D005054 ORTHO05D005948 3.4e-86 322.0 201 82.1
VMungo1309G0253 Vigna mungo HOM05D005054 ORTHO05D005948 1.0e-85 320.5 186 84.4
arahy.Tifrunner.gnm1.ann1.NJ6IKW Arachis hypogaea HOM05D005054 ORTHO05D005948 3.8e-85 318.5 178 88.8
Lj1g0015588 Lotus japonicus HOM05D005054 ORTHO05D005948 4.2e-84 315.1 177 88.1
CANSAT78G0154 Cannabis sativa HOM05D005054 ORTHO05D005948 1.0e-82 310.5 178 83.7
TWI32G1290 Tripterygium wilfordii HOM05D005054 ORTHO05D005948 3.9e-82 308.5 177 84.2
Thecc.09G021500 Theobroma cacao HOM05D005054 ORTHO05D005948 3.3e-81 305.4 177 84.2
Duzib187G0432 Durio zibethinus HOM05D005054 ORTHO05D005948 5.7e-81 304.7 179 83.8
Nn2g12158 Nelumbo nucifera HOM05D005054 ORTHO05D005948 9.7e-81 303.9 178 80.3
Actinidia14591 Actinidia chinensis HOM05D005054 ORTHO05D005948 1.3e-80 303.5 178 82.0
Gohir.A07G029500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 1.3e-80 303.5 179 83.8
Gorai.001G035100 Gossypium raimondii HOM05D005054 ORTHO05D005948 1.3e-80 303.5 179 83.8
COL.COLO4_18886 Corchorus olitorius HOM05D002641 ORTHO05D001537 1.7e-80 303.1 181 81.8
Sc06g0000550 Simmondsia chinensis HOM05D005054 ORTHO05D005948 1.7e-80 303.1 200 74.0
Aqoxy7G03608 Aquilegia oxysepala HOM05D005054 ORTHO05D005948 1.1e-79 300.4 179 82.1
CiPaw.08G009700 Carya illinoinensis HOM05D005054 ORTHO05D005948 1.1e-79 300.4 179 82.7
ClCG05G016710 Citrullus lanatus HOM05D005054 ORTHO05D005948 1.4e-79 300.1 186 79.0
CsaV3_3G046210 Cucumis sativus L. HOM05D005054 ORTHO05D005948 1.4e-79 300.1 199 74.9
Dinv18198 Davidia involucrata HOM05D005054 ORTHO05D005948 1.8e-79 299.7 174 83.9
Gohir.D07G033500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 1.8e-79 299.7 179 82.7
PGR083G2649 Punica granatum HOM05D005054 ORTHO05D005948 2.4e-79 299.3 179 83.8
GSVIVG01035953001 Vitis vinifera HOM05D005054 ORTHO05D005948 2.4e-79 299.3 177 83.1
Haze_21489 Corylus avellana HOM05D005054 ORTHO05D005948 3.1e-79 298.9 180 83.3
MELO3C003718.2 Cucumis melo HOM05D005054 ORTHO05D005948 3.1e-79 298.9 199 74.4
Sed0027504 Sechium edule HOM05D005054 ORTHO05D005948 6.9e-79 297.7 177 80.2
Prupe.1G483600 Prunus persica HOM05D005054 ORTHO05D005948 9.1e-79 297.4 178 81.5
Solyc08g041980.3 Solanum lycopersicum HOM05D005054 ORTHO05D005948 9.1e-79 297.4 177 81.9
Sopen08g012360 Solanum pennellii HOM05D005054 ORTHO05D005948 9.1e-79 297.4 177 81.9
TAR625G0984 Trochodendron aralioides HOM05D005054 ORTHO05D005948 9.1e-79 297.4 177 81.9
Manes.16G124300 Manihot esculenta HOM05D005054 ORTHO05D005948 1.2e-78 297.0 176 83.0
MD15G1128300 Malus domestica HOM05D005054 ORTHO05D005948 1.5e-78 296.6 179 81.6
Sed0004415 Sechium edule HOM05D005054 ORTHO05D005948 1.5e-78 296.6 213 70.9
CiPaw.07G225400 Carya illinoinensis HOM05D005054 ORTHO05D005948 2.0e-78 296.2 177 82.5
TAR626G0177 Trochodendron aralioides HOM05D005054 ORTHO05D005948 3.4e-78 295.4 177 81.4
HanXRQChr02g0050341 Helianthus annuus HOM05D005054 ORTHO05D005948 5.9e-78 294.7 174 80.5
MD08G1157200 Malus domestica HOM05D005054 ORTHO05D005948 5.9e-78 294.7 179 81.0
HanXRQChr13g0403241 Helianthus annuus HOM05D005054 ORTHO05D005948 7.7e-78 294.3 171 81.9
Potri.006G257100 Populus trichocarpa HOM05D005054 ORTHO05D005948 7.7e-78 294.3 177 81.9
CSS0023128 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 1.3e-77 293.5 178 81.5
CSS0037696 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 1.3e-77 293.5 178 81.5
Gohir.D06G101400 Gossypium hirsutum HOM05D005054 ORTHO05D005948 1.3e-77 293.5 179 79.3
Gorai.010G116300 Gossypium raimondii HOM05D005054 ORTHO05D005948 1.3e-77 293.5 179 79.3
CAN.G9.14 Capsicum annuum HOM05D005054 ORTHO05D005948 1.7e-77 293.1 177 80.8
Potri.018G024600 Populus trichocarpa HOM05D005054 ORTHO05D005948 1.7e-77 293.1 177 81.4
Eucgr.C02743 Eucalyptus grandis HOM05D005054 ORTHO05D005948 2.9e-77 292.4 176 81.2
Manes.03G012900 Manihot esculenta HOM05D005054 ORTHO05D005948 2.9e-77 292.4 176 81.8
Ciclev10009464m.g Citrus clementina HOM05D005054 ORTHO05D005948 6.5e-77 291.2 201 73.1
Gohir.A06G099200 Gossypium hirsutum HOM05D005054 ORTHO05D005948 1.1e-76 290.4 181 77.9
Cc08_g00410 Coffea canephora HOM05D005054 ORTHO05D005948 1.4e-76 290.0 177 79.1
ECA233G2586 Erigeron canadensis HOM05D005054 ORTHO05D005948 1.6e-75 286.6 196 70.9
Lsat_1_v5_gn_6_20280 Lactuca sativa HOM05D005054 ORTHO05D005948 4.7e-75 285.0 183 74.9
CSS0023723 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 1.0e-74 283.9 182 79.1
CSS0024153 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 1.0e-74 283.9 182 79.1
Nitab4.5_0003389g0010 Nicotiana tabacum HOM05D005054 ORTHO05D005948 2.3e-74 282.7 192 75.0
ATR0767G140 Amborella trichopoda HOM05D005054 ORTHO05D005948 3.9e-74 282.0 191 72.8
EL10Ac2g04185 Beta vulgaris HOM05D005054 ORTHO05D005948 8.8e-74 280.8 174 78.2
QL02p021123 Quercus lobata HOM05D005054 ORTHO05D005948 8.8e-74 280.8 175 80.6
RcHm_v2.0_Chr6g0297531 Rosa chinensis HOM05D005054 ORTHO05D005948 1.1e-73 280.4 175 78.3
Lj8A723T59 Lonicera japonica HOM05D005054 ORTHO05D005948 3.3e-73 278.9 159 84.9
HPP92_000468 Vanilla planifolia HOM05D005054 ORTHO05D005948 1.3e-72 276.9 173 75.1
Actinidia33783 Actinidia chinensis HOM05D005054 ORTHO05D005948 2.8e-72 275.8 160 83.1
Cpa.g.sc187.3 Carica papaya HOM05D005054 ORTHO05D005948 2.8e-72 275.8 176 78.4
Actinidia22328 Actinidia chinensis HOM05D005054 ORTHO05D005948 8.2e-72 274.2 167 79.6
Migut.A00022 Erythranthe guttata HOM05D005054 ORTHO05D005948 1.4e-71 273.5 174 78.2
FvH4_2g28770 Fragaria vesca HOM05D005054 ORTHO05D005948 1.4e-71 273.5 175 76.6
FAN24G3113 Fragaria x ananassa HOM05D005054 ORTHO05D005948 1.4e-71 273.5 175 76.6
THA.LOC104803647 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 1.4e-71 273.5 197 70.6
FAN27G2872 Fragaria x ananassa HOM05D005054 ORTHO05D005948 2.4e-71 272.7 175 77.1
FAN15G2263 Fragaria x ananassa HOM05D002641 ORTHO05D005948 5.3e-71 271.6 175 76.6
FAN20G0036 Fragaria x ananassa HOM05D005054 ORTHO05D005948 1.2e-70 270.4 175 76.6
Hund25870 Selenicereus undatus HOM05D005054 ORTHO05D005948 1.2e-70 270.4 179 76.0
THA.LOC104803846 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 1.2e-70 270.4 178 77.5
PSO017G3131 Papaver somniferum HOM05D005054 ORTHO05D005948 2.0e-70 269.6 172 75.6
Sabra18G0027000 Salix brachista HOM05D002641 ORTHO05D001537 3.5e-70 268.9 191 73.3
unitig_0.g694 Utricularia gibba HOM05D005054 ORTHO05D005948 4.5e-70 268.5 175 73.7
AUR62031549 Chenopodium quinoa HOM05D005054 ORTHO05D005948 5.9e-70 268.1 160 83.1
AT2G25310 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 7.7e-70 267.7 177 75.7
PSO170G1976 Papaver somniferum HOM05D005054 ORTHO05D005948 7.7e-70 267.7 171 76.0
MSTRG.26017 Avicennia marina HOM05D005054 ORTHO05D005948 1.3e-69 266.9 175 76.0
Carub.0004s0494 Capsella rubella HOM05D005054 ORTHO05D005948 1.7e-69 266.5 177 74.6
vmacro11190 Vaccinium macrocarpon HOM05D005054 ORTHO05D005948 2.9e-69 265.8 263 55.5
AL4G16690 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 5.0e-69 265.0 177 74.0
Thhalv10026275m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 1.5e-68 263.5 174 74.7
A09p55700 Brassica napus HOM05D005054 ORTHO05D005948 3.2e-68 262.3 177 74.6
BraA09t40971Z Brassica rapa HOM05D005054 ORTHO05D005948 3.2e-68 262.3 177 74.6
Sp4g04450 Schrenkiella parvula HOM05D005054 ORTHO05D005948 3.2e-68 262.3 177 74.0
BcaB08g35175 Brassica carinata HOM05D005054 ORTHO05D005948 9.4e-68 260.8 177 74.0
Zm00001eb275230 Zea mays HOM05D005054 ORTHO05D005948 1.6e-67 260.0 174 74.1
Rhsim02G0203400 Rhododendron simsii HOM05D005054 ORTHO05D005948 2.1e-67 259.6 206 65.0
SalBow4G2693 Salvia bowleyana HOM05D005054 ORTHO05D005948 2.1e-67 259.6 180 72.2
BcaC07g40871 Brassica carinata HOM05D005054 ORTHO05D005948 3.6e-67 258.8 177 73.4
CARHR116210 Cardamine hirsuta HOM05D005054 ORTHO05D005948 3.6e-67 258.8 172 73.8
AT4G32130 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 4.7e-67 258.5 174 74.1
AL7G19730 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 6.1e-67 258.1 174 74.7
CARHR240040 Cardamine hirsuta HOM05D005054 ORTHO05D005948 6.1e-67 258.1 174 73.0
Carub.0007s0843 Capsella rubella HOM05D005054 ORTHO05D005948 1.0e-66 257.3 174 73.6
Thhalv10000323m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 1.0e-66 257.3 177 71.8
Os06g0644100 Oryza sativa ssp. japonica HOM05D005054 ORTHO05D005948 2.3e-66 256.1 176 71.0
Sopen06g024410 Solanum pennellii HOM05D005054 ORTHO05D005948 8.8e-66 254.2 173 74.0
BcaC09g52000 Brassica carinata HOM05D005054 ORTHO05D005948 1.1e-65 253.8 174 70.7
Sp7g29920 Schrenkiella parvula HOM05D005054 ORTHO05D005948 1.1e-65 253.8 174 70.7
BolC1t00678H Brassica oleracea HOM05D005054 ORTHO05D005948 2.0e-65 253.1 177 70.6
BolC8t51440H Brassica oleracea HOM05D005054 ORTHO05D005948 3.3e-65 252.3 183 71.0
CAN.G1475.8 Capsicum annuum HOM05D005054 ORTHO05D005948 4.4e-65 251.9 176 72.2
C08p38700 Brassica napus HOM05D005054 ORTHO05D005948 7.5e-65 251.1 183 70.5
AUR62012426 Chenopodium quinoa HOM05D005054 ORTHO05D005948 7.5e-65 251.1 174 73.6
BraA01t00585Z Brassica rapa HOM05D005054 ORTHO05D005948 2.2e-64 249.6 174 69.5
BcaNung03140 Brassica carinata HOM05D005054 ORTHO05D005948 2.8e-64 249.2 174 69.5
Solyc06g065930.4 Solanum lycopersicum HOM05D005054 ORTHO05D005948 3.7e-64 248.8 173 72.3
CDE12G0076 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 1.1e-63 247.3 171 71.3
Nitab4.5_0000109g0420 Nicotiana tabacum HOM05D005054 ORTHO05D005948 4.1e-63 245.4 165 74.5
Zm00001eb387020 Zea mays HOM05D005054 ORTHO05D005948 1.5e-60 236.9 147 76.2
arahy.Tifrunner.gnm1.ann1.49IL45 Arachis hypogaea HOM05D005054 ORTHO05D005948 5.5e-60 235.0 178 71.3
CDE01G0036 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 4.7e-59 231.9 197 62.4
PGSC0003DMG400029900 Solanum tuberosum HOM05D005054 ORTHO05D005948 3.1e-55 219.2 126 84.1
Atru.chr7.2466 Acer truncatum HOM05D002641 ORTHO05D001537 1.6e-54 216.9 137 75.9
Mapoly0003s0100 Marchantia polymorpha HOM05D005054 ORTHO05D005948 1.7e-53 213.4 175 60.6
MBI14_g36925_MAGBIO Magnolia biondii HOM05D005054 ORTHO05D005948 3.8e-53 212.2 121 85.1
Nitab4.5_0005785g0040 Nicotiana tabacum HOM05D005054 ORTHO05D005948 8.0e-51 204.5 123 79.7
Nitab4.5_0000857g0140 Nicotiana tabacum HOM05D005054 ORTHO05D005948 3.4e-49 199.1 154 67.5
AagrBONN_evm.TU.Sc2ySwM_362.161 Anthoceros agrestis HOM05D005054 ORTHO05D005948 1.8e-47 193.4 170 57.1
Pp3c25_10780 Physcomitrium patens HOM05D005054 ORTHO05D005948 9.2e-47 191.0 210 49.5
SGA_v2.0_scaffold64G21960 Striga asiatica HOM05D005054 ORTHO05D005948 2.0e-46 189.9 120 81.7
SMO354G0008 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 2.9e-45 186.0 150 60.0
Zm00001eb149990 Zea mays HOM05D005054 ORTHO05D005948 2.5e-44 183.0 120 73.3
arahy.Tifrunner.gnm1.ann1.M1LVA5 Arachis hypogaea HOM05D005054 ORTHO05D005948 9.5e-44 181.0 95 89.5
DCAR_001545 Daucus carota HOM05D005054 ORTHO05D005948 1.6e-43 180.3 103 85.4
Actinidia14094 Actinidia chinensis HOM05D005054 ORTHO05D005948 4.7e-43 178.7 180 55.6
Oeu024982.1 Olea europaea HOM05D005054 ORTHO05D005948 8.0e-43 177.9 110 82.7
Peaxi162Scf00136g00153 Petunia axillaris HOM05D005054 ORTHO05D005948 6.8e-42 174.9 104 81.7
HPP92_000478 Vanilla planifolia HOM05D005054 ORTHO05D005948 3.2e-39 166.0 147 57.1
SMO364G0469 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 6.6e-37 158.3 149 52.3
CBR_g24053 Chara braunii HOM05D005054 ORTHO05D005948 4.3e-36 155.6 177 46.9
CDE01G0528 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 4.7e-35 152.1 173 51.4
Zm00001eb279560 Zea mays HOM05D005054 ORTHO05D005948 7.0e-31 138.3 106 66.0
FvH4_6g38550 Fragaria vesca HOM05D005054 ORTHO05D005948 6.6e-21 105.1 108 55.6
Zm00001eb412760 Zea mays HOM05D002563 ORTHO05D005948 7.3e-20 101.7 78 60.3
C01p06810 Brassica napus HOM05D000316 ORTHO05D001978 1.8e-18 97.1 72 63.9
A01p06180 Brassica napus HOM05D000316 ORTHO05D001978 3.1e-18 96.3 72 62.5
MCO11G876 Micromonas commoda HOM05D005054 ORTHO05D005948 6.8e-18 95.1 156 37.2
Zm00001eb260640 Zea mays HOM05D002563 ORTHO05D005948 2.6e-17 93.2 59 71.2
Nitab4.5_0006784g0020 Nicotiana tabacum HOM05D005054 ORTHO05D005948 6.4e-16 88.6 188 37.8
Cre07.g340650 Chlamydomonas reinhardtii HOM05D005054 ORTHO05D005948 1.0e-13 81.3 168 32.7
TPR.G18056 Trifolium pratense HOM05D005054 ORTHO05D005948 3.9e-13 79.3 47 85.1
Zm00001eb260650 Zea mays HOM05D005054 ORTHO05D005948 3.1e-10 69.7 56 64.3
EL10Ac1g01779 Beta vulgaris HOM05D005054 ORTHO05D005948 5.2e-10 68.9 40 77.5
Aa31LG2G17830 Aethionema arabicum HOM05D005054 ORTHO05D005948 6.9e-10 68.6 76 47.4
CSS0035454 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D015543 7.8e-06 55.1 45 57.8


User provided reference genes

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