Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g024680 Pisum sativum HOM05D007770 ORTHO05D009827 1.2e-76 289.7 140 100.0
Medtr3g109170 Medicago truncatula HOM05D007770 ORTHO05D009827 2.5e-45 185.7 122 75.4
TPR.G12312 Trifolium pratense HOM05D007770 ORTHO05D009827 2.3e-38 162.5 126 65.1
TAR625G0611 Trochodendron aralioides HOM05D007770 ORTHO05D009827 3.5e-31 138.7 107 57.0
Phvul.009G103700 Phaseolus vulgaris HOM05D007770 ORTHO05D009827 1.8e-30 136.3 110 60.0
FvH4_2g36440 Fragaria vesca HOM05D007770 ORTHO05D009827 3.9e-30 135.2 117 52.1
MSTRG.13938 Avicennia marina HOM05D007770 ORTHO05D009827 8.7e-30 134.0 121 49.6
Ciclev10010266m.g Citrus clementina HOM05D007770 ORTHO05D009827 1.5e-29 133.3 106 59.4
FAN27G1234 Fragaria x ananassa HOM05D007770 ORTHO05D009827 1.5e-29 133.3 117 51.3
VMungo1309G0540 Vigna mungo HOM05D007770 ORTHO05D009827 1.9e-29 132.9 69 79.7
PSO063G4434 Papaver somniferum HOM05D007770 ORTHO05D009827 2.5e-29 132.5 101 58.4
Lj1g0002810 Lotus japonicus HOM05D007770 ORTHO05D009827 3.3e-29 132.1 122 54.1
QL12p025908 Quercus lobata HOM05D007770 ORTHO05D009827 7.4e-29 131.0 108 55.6
Atru.chr7.2683 Acer truncatum HOM05D007770 ORTHO05D009827 9.6e-29 130.6 72 75.0
Cc08_g05750 Coffea canephora HOM05D007770 ORTHO05D009827 1.6e-28 129.8 114 55.3
Glyma.04G077900 Glycine max HOM05D007770 ORTHO05D009827 1.6e-28 129.8 76 76.3
CiPaw.08G021600 Carya illinoinensis HOM05D007770 ORTHO05D009827 2.1e-28 129.4 115 53.9
Nn8g41062 Nelumbo nucifera HOM05D007770 ORTHO05D009827 3.6e-28 128.6 87 59.8
Aqoxy7G02675 Aquilegia oxysepala HOM05D007770 ORTHO05D009827 8.1e-28 127.5 106 55.7
Eucgr.C04242 Eucalyptus grandis HOM05D007770 ORTHO05D009827 1.4e-27 126.7 76 68.4
Lsat_1_v5_gn_3_26540 Lactuca sativa HOM05D007770 ORTHO05D009827 1.4e-27 126.7 88 60.2
AT2G24395 Arabidopsis thaliana HOM05D007770 ORTHO05D009827 2.4e-27 125.9 111 54.1
ECA246G2424 Erigeron canadensis HOM05D007770 ORTHO05D009827 2.4e-27 125.9 93 55.9
CSS0009557 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D009827 4.0e-27 125.2 67 74.6
Migut.E01418 Erythranthe guttata HOM05D007770 ORTHO05D009827 5.3e-27 124.8 100 54.0
AL4G14830 Arabidopsis lyrata HOM05D007770 ORTHO05D009827 6.9e-27 124.4 97 57.7
Dinv13246 Davidia involucrata HOM05D007770 ORTHO05D009827 6.9e-27 124.4 89 57.3
Thhalv10000372m.g Eutrema salsugineum HOM05D007770 ORTHO05D009827 6.9e-27 124.4 76 65.8
Aa31sc132G30 Aethionema arabicum HOM05D007770 ORTHO05D009827 9.0e-27 124.0 121 49.6
Carub.0004s0375 Capsella rubella HOM05D007770 ORTHO05D009827 9.0e-27 124.0 118 52.5
Duzib150G1352 Durio zibethinus HOM05D007770 ORTHO05D009827 9.0e-27 124.0 89 61.8
MD08G1124100 Malus domestica HOM05D007770 ORTHO05D009827 1.2e-26 123.6 118 50.8
CARHR117660 Cardamine hirsuta HOM05D007770 ORTHO05D009827 7.6e-26 120.9 67 73.1
CANSAT56G0680 Cannabis sativa HOM05D007770 ORTHO05D009827 2.2e-25 119.4 65 72.3
Sp4g03420 Schrenkiella parvula HOM05D007770 ORTHO05D009827 4.9e-25 118.2 76 61.8
CSS0027547 Camellia sinensis var. sinensis HOM05D007770 ORTHO05D009827 8.4e-25 117.5 67 71.6
Manes.16G137500 Manihot esculenta HOM05D007770 ORTHO05D009827 8.4e-25 117.5 118 47.5
HPP92_017098 Vanilla planifolia HOM05D007770 ORTHO05D009827 1.2e-23 113.6 93 55.9
GSVIVG01035563001 Vitis vinifera HOM05D007770 ORTHO05D009827 1.6e-23 113.2 106 50.0
TWI34G0832 Tripterygium wilfordii HOM05D007770 ORTHO05D009827 1.0e-22 110.5 67 67.2
FAN20G1378 Fragaria x ananassa HOM05D007770 ORTHO05D009827 2.3e-22 109.4 117 43.6
CDE02G4318 Ceratophyllum demersum HOM05D007770 ORTHO05D009827 6.7e-22 107.8 99 48.5
HanXRQChr17g0539271 Helianthus annuus HOM05D007770 ORTHO05D009827 6.7e-22 107.8 80 58.8
Pp3c27_7640 Physcomitrium patens HOM05D007770 ORTHO05D009827 2.5e-21 105.9 67 61.2
Mapoly0035s0047 Marchantia polymorpha HOM05D007770 ORTHO05D009827 4.3e-21 105.1 99 46.5
arahy.Tifrunner.gnm1.ann1.SE3NL1 Arachis hypogaea HOM05D007770 ORTHO05D009827 1.3e-20 103.6 117 45.3
CDE06G0935 Ceratophyllum demersum HOM05D007770 ORTHO05D009827 3.7e-20 102.1 91 48.4
unitig_747.g21378 Utricularia gibba HOM05D007770 ORTHO05D009827 3.7e-20 102.1 78 51.3
EL10Ac2g03698 Beta vulgaris HOM05D007770 ORTHO05D009827 4.8e-20 101.7 71 60.6
arahy.Tifrunner.gnm1.ann1.DWH8JW Arachis hypogaea HOM05D007770 ORTHO05D009827 6.2e-20 101.3 67 61.2
Thecc.09G003100 Theobroma cacao HOM05D007770 ORTHO05D009827 6.2e-20 101.3 87 52.9
Prupe.1G455800 Prunus persica HOM05D007770 ORTHO05D009827 8.1e-20 100.9 92 46.7
A04p18710 Brassica napus HOM05D007770 ORTHO05D009827 2.4e-19 99.4 69 59.4
BraA04t17481Z Brassica rapa HOM05D007770 ORTHO05D009827 3.1e-19 99.0 119 42.0
Nitab4.5_0001942g0170 Nicotiana tabacum HOM05D007770 ORTHO05D009827 5.3e-19 98.2 98 43.9
Gohir.D06G109700 Gossypium hirsutum HOM05D007770 ORTHO05D009827 6.9e-19 97.8 119 44.5
BcaC02g08464 Brassica carinata HOM05D007770 ORTHO05D009827 9.0e-19 97.4 69 59.4
CBR_g3948 Chara braunii HOM05D007770 ORTHO05D009827 9.0e-19 97.4 112 41.1
Gorai.010G124500 Gossypium raimondii HOM05D007770 ORTHO05D009827 9.0e-19 97.4 119 44.5
Potri.006G278250 Populus trichocarpa HOM05D007770 ORTHO05D009827 4.5e-18 95.1 110 40.9
BolC4t26952H Brassica oleracea HOM05D007770 ORTHO05D009827 2.9e-17 92.4 121 41.3
AagrBONN_evm.TU.Sc2ySwM_228.4990 Anthoceros agrestis HOM05D007770 ORTHO05D009827 3.8e-17 92.0 63 58.7
FAN15G1940 Fragaria x ananassa HOM05D007770 ORTHO05D009827 4.9e-17 91.7 97 44.3
Sabra06G0215900 Salix brachista HOM05D007770 ORTHO05D009827 6.5e-17 91.3 127 37.0
Sopen08g022850 Solanum pennellii HOM05D007770 ORTHO05D009827 6.5e-17 91.3 78 48.7
Solyc08g069230.3 Solanum lycopersicum HOM05D007770 ORTHO05D009827 8.4e-17 90.9 78 47.4
CAN.G480.16 Capsicum annuum HOM05D007770 ORTHO05D009827 1.4e-16 90.1 68 54.4
RcHm_v2.0_Chr6g0305461 Rosa chinensis HOM05D007770 ORTHO05D009827 1.4e-16 90.1 98 42.9
PGSC0003DMG400029583 Solanum tuberosum HOM05D007770 ORTHO05D009827 2.5e-16 89.4 80 47.5
ClCG08G012500 Citrullus lanatus HOM05D007770 ORTHO05D009827 3.2e-16 89.0 69 55.1
MELO3C011169.2 Cucumis melo HOM05D007770 ORTHO05D009827 3.2e-16 89.0 64 60.9
C04p54000 Brassica napus HOM05D007770 ORTHO05D009827 9.3e-16 87.4 121 39.7
CANSAT56G1809 Cannabis sativa HOM05D007770 ORTHO05D009827 9.3e-16 87.4 79 50.6
Actinidia25745 Actinidia chinensis HOM05D007770 ORTHO05D009827 1.6e-15 86.7 45 75.6
arahy.Tifrunner.gnm1.ann1.T2QDAL Arachis hypogaea HOM05D007770 ORTHO05D009827 1.6e-15 86.7 86 47.7
DCAR_000666 Daucus carota HOM05D007770 ORTHO05D009827 2.1e-15 86.3 88 44.3
Zm00001eb035580 Zea mays HOM05D007770 ORTHO05D009827 2.7e-15 85.9 140 34.3
Sed0000657 Sechium edule HOM05D007770 ORTHO05D009827 6.0e-15 84.7 55 63.6
CsaV3_2G031200 Cucumis sativus L. HOM05D007770 ORTHO05D009827 7.9e-15 84.3 56 60.7
Gohir.A06G107400 Gossypium hirsutum HOM05D007770 ORTHO05D009827 1.0e-14 84.0 66 57.6
SalBow8G5425 Salvia bowleyana HOM05D007770 ORTHO05D009827 1.8e-14 83.2 80 47.5
Lalb_Chr23g0269281 Lupinus albus HOM05D007770 ORTHO05D009827 8.7e-14 80.9 79 48.1
Os08g0520850 Oryza sativa ssp. japonica HOM05D007770 ORTHO05D009827 8.7e-14 80.9 51 60.8
Nitab4.5_0000970g0130 Nicotiana tabacum HOM05D007770 ORTHO05D009827 1.5e-13 80.1 63 54.0
MD15G1102800 Malus domestica HOM05D007770 ORTHO05D009827 3.3e-13 79.0 69 49.3
HPP92_017108 Vanilla planifolia HOM05D007770 ORTHO05D009827 1.6e-12 76.6 75 48.0
Glyma.06G079000 Glycine max HOM05D007770 ORTHO05D009827 7.6e-10 67.8 54 51.9
MD08G1226400 Malus domestica HOM05D007770 ORTHO05D009827 9.3e-08 60.8 30 73.3


User provided reference genes

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