Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g022320 Pisum sativum HOM05D005302 ORTHO05D006422 6.9e-308 1059.7 492 100.0
Ca_15604_v3 Cicer arietinum L. HOM05D005302 ORTHO05D006422 7.8e-267 923.3 492 87.8
Medtr3g110160 Medicago truncatula HOM05D005302 ORTHO05D006422 7.3e-265 916.8 493 88.2
Glyma.04G082500 Glycine max HOM05D005302 ORTHO05D006422 2.0e-238 828.9 505 77.0
Lalb_Chr08g0243151 Lupinus albus HOM05D005302 ORTHO05D006422 8.4e-237 823.5 503 76.7
Glyma.06G084100 Glycine max HOM05D005302 ORTHO05D006422 3.2e-236 821.6 495 77.4
Lj1g0022106 Lotus japonicus HOM05D005302 ORTHO05D006422 2.7e-235 818.5 425 86.6
VMungo1309G1003 Vigna mungo HOM05D005302 ORTHO05D006422 1.0e-234 816.6 502 76.9
Phvul.009G108200 Phaseolus vulgaris HOM05D005302 ORTHO05D006422 3.1e-231 805.1 497 76.1
RcHm_v2.0_Chr6g0306001 Rosa chinensis HOM05D005302 ORTHO05D006422 1.4e-228 796.2 487 75.8
FvH4_2g35770 Fragaria vesca HOM05D005302 ORTHO05D006422 9.3e-228 793.5 483 75.6
MD15G1095400 Malus domestica HOM05D005302 ORTHO05D006422 1.5e-225 786.2 432 81.5
FAN27G3010 Fragaria x ananassa HOM05D005302 ORTHO05D006422 2.1e-224 782.3 485 74.6
PGR044G1364 Punica granatum HOM05D005302 ORTHO05D006422 2.4e-223 778.9 489 73.0
Dinv14245 Davidia involucrata HOM05D005302 ORTHO05D006422 9.0e-223 776.9 441 78.2
Actinidia13324 Actinidia chinensis HOM05D005302 ORTHO05D006422 9.9e-222 773.5 449 77.5
MD08G1115600 Malus domestica HOM05D005302 ORTHO05D006422 1.3e-221 773.1 481 74.0
Prupe.1G450300 Prunus persica HOM05D005302 ORTHO05D006422 3.8e-221 771.5 435 79.8
Rhsim02G0179400 Rhododendron simsii HOM05D005302 ORTHO05D006422 3.2e-220 768.5 457 76.1
arahy.Tifrunner.gnm1.ann1.R6A5BY Arachis hypogaea HOM05D005302 ORTHO05D006422 1.2e-219 766.5 446 77.8
arahy.Tifrunner.gnm1.ann1.P7Z4SB Arachis hypogaea HOM05D005302 ORTHO05D006422 3.5e-219 765.0 446 77.8
CiPaw.08G024700 Carya illinoinensis HOM05D005302 ORTHO05D006422 1.8e-218 762.7 450 75.3
Eucgr.C02909 Eucalyptus grandis HOM05D005302 ORTHO05D006422 2.3e-218 762.3 430 79.1
CsaV3_2G030970 Cucumis sativus L. HOM05D005302 ORTHO05D006422 8.7e-218 760.4 491 70.9
TWI34G0390 Tripterygium wilfordii HOM05D005302 ORTHO05D006422 1.1e-217 760.0 458 74.2
CSS0024291 Camellia sinensis var. sinensis HOM05D005302 ORTHO05D006422 2.5e-217 758.8 495 72.1
CSS0027627 Camellia sinensis var. sinensis HOM05D005302 ORTHO05D006422 2.5e-217 758.8 495 72.1
Hma1.2p1_0393F.1_g143080 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 4.3e-217 758.1 468 73.3
CiPaw.07G205300 Carya illinoinensis HOM05D005302 ORTHO05D006422 7.4e-217 757.3 449 75.5
CANSAT25G0630 Cannabis sativa HOM05D005302 ORTHO05D006422 6.2e-216 754.2 428 77.3
Manes.16G072000 Manihot esculenta HOM05D005302 ORTHO05D006422 1.1e-215 753.4 465 73.3
Gorai.009G050600 Gossypium raimondii HOM05D005302 ORTHO05D006422 1.8e-215 752.7 462 73.6
MELO3C011150.2 Cucumis melo HOM05D005302 ORTHO05D006422 2.4e-215 752.3 491 70.5
Atru.chr7.2133 Acer truncatum HOM05D005302 ORTHO05D006422 4.0e-215 751.5 466 71.7
Gohir.D05G049300 Gossypium hirsutum HOM05D005302 ORTHO05D006422 5.3e-215 751.1 462 73.4
Potri.018G040200 Populus trichocarpa HOM05D005302 ORTHO05D006422 1.5e-214 749.6 439 76.8
Nn2g11666 Nelumbo nucifera HOM05D005302 ORTHO05D006422 7.6e-214 747.3 475 72.4
TAR624G0168 Trochodendron aralioides HOM05D005302 ORTHO05D006422 9.9e-214 746.9 461 73.5
FAN20G2881 Fragaria x ananassa HOM05D005302 ORTHO05D006422 1.4e-212 743.0 520 68.8
Cc08_g09240 Coffea canephora HOM05D005302 ORTHO05D006422 1.9e-212 742.7 444 75.2
Aqoxy7G03804 Aquilegia oxysepala HOM05D005302 ORTHO05D006422 2.4e-212 742.3 428 76.6
ECA246G0277 Erigeron canadensis HOM05D005302 ORTHO05D006422 2.4e-212 742.3 456 73.9
GSVIVG01035645001 Vitis vinifera HOM05D005302 ORTHO05D006422 2.4e-212 742.3 428 76.4
Thhalv10025006m.g Eutrema salsugineum HOM05D005302 ORTHO05D006422 4.2e-212 741.5 478 70.1
Haze_21877 Corylus avellana HOM05D005302 ORTHO05D006422 5.5e-212 741.1 481 70.3
QL12p029391 Quercus lobata HOM05D005302 ORTHO05D006422 7.1e-212 740.7 521 67.9
C07p59340 Brassica napus HOM05D005302 ORTHO05D006422 9.3e-212 740.3 485 69.5
Sp7g30530 Schrenkiella parvula HOM05D005302 ORTHO05D006422 9.3e-212 740.3 435 74.7
EL10Ac2g04046 Beta vulgaris HOM05D005302 ORTHO05D006422 1.2e-211 740.0 449 73.7
BolC7t46379H Brassica oleracea HOM05D005302 ORTHO05D006422 1.6e-211 739.6 485 69.3
FAN15G3230 Fragaria x ananassa HOM05D005302 ORTHO05D006422 2.1e-211 739.2 515 68.3
Carub.0007s0772 Capsella rubella HOM05D005302 ORTHO05D006422 2.7e-211 738.8 468 69.9
CARHR240760 Cardamine hirsuta HOM05D005302 ORTHO05D006422 3.5e-211 738.4 454 72.5
Migut.A00220 Erythranthe guttata HOM05D005302 ORTHO05D006422 4.6e-211 738.0 460 71.7
Duzib150G0232 Durio zibethinus HOM05D005302 ORTHO05D006422 1.3e-210 736.5 472 70.6
Ciclev10008169m.g Citrus clementina HOM05D005302 ORTHO05D006422 8.7e-210 733.8 428 75.0
Sed0007027 Sechium edule HOM05D005302 ORTHO05D006422 1.1e-209 733.4 425 75.8
Thecc.09G042800 Theobroma cacao HOM05D005302 ORTHO05D006422 1.1e-209 733.4 478 69.9
PSO210G3865 Papaver somniferum HOM05D005302 ORTHO05D006422 1.9e-209 732.6 450 72.4
A03p61580 Brassica napus HOM05D005302 ORTHO05D006422 5.6e-209 731.1 486 68.5
BraA03t15200Z Brassica rapa HOM05D005302 ORTHO05D006422 5.6e-209 731.1 486 68.5
COL.COLO4_18671 Corchorus olitorius HOM05D005302 ORTHO05D006422 7.4e-209 730.7 481 70.3
PSO210G0275 Papaver somniferum HOM05D005302 ORTHO05D006422 7.4e-209 730.7 450 72.4
AT4G32770 Arabidopsis thaliana HOM05D005302 ORTHO05D006422 9.6e-209 730.3 467 70.2
MSTRG.11705 Avicennia marina HOM05D005302 ORTHO05D006422 9.6e-209 730.3 426 75.6
Nitab4.5_0010908g0010 Nicotiana tabacum HOM05D005302 ORTHO05D006422 9.6e-209 730.3 444 72.5
AL7G18970 Arabidopsis lyrata HOM05D005302 ORTHO05D006422 3.7e-208 728.4 477 69.0
Peaxi162Scf00822g00210 Petunia axillaris HOM05D005302 ORTHO05D006422 3.7e-208 728.4 426 74.4
HanXRQChr08g0236291 Helianthus annuus HOM05D005302 ORTHO05D006422 6.2e-208 727.6 434 75.8
LjContig00226g0022694 Lotus japonicus HOM05D005302 ORTHO05D006422 8.2e-208 727.2 380 86.3
LjContig00518g0000858 Lotus japonicus HOM05D005302 ORTHO05D006422 8.2e-208 727.2 380 86.3
Gohir.A07G022700 Gossypium hirsutum HOM05D005302 ORTHO05D006422 4.0e-207 724.9 484 68.8
AUR62009303 Chenopodium quinoa HOM05D005302 ORTHO05D006422 5.3e-207 724.5 472 70.6
Sabra18G0040100 Salix brachista HOM05D005302 ORTHO05D006422 6.9e-207 724.2 448 73.4
SGA_v2.0_scaffold103G29944 Striga asiatica HOM05D005302 ORTHO05D006422 6.9e-207 724.2 426 75.8
Aa31LG2G17190 Aethionema arabicum HOM05D005302 ORTHO05D006422 4.5e-206 721.5 427 74.2
CAN.G21.50 Capsicum annuum HOM05D005302 ORTHO05D006422 4.5e-206 721.5 490 66.5
Gorai.001G027200 Gossypium raimondii HOM05D005302 ORTHO05D006422 4.5e-206 721.5 480 68.8
Lj8C588T0 Lonicera japonica HOM05D005302 ORTHO05D006422 5.8e-206 721.1 455 72.7
Gohir.D07G026100 Gossypium hirsutum HOM05D005302 ORTHO05D006422 7.6e-206 720.7 487 67.6
PGSC0003DMG400029051 Solanum tuberosum HOM05D005302 ORTHO05D006422 7.6e-206 720.7 433 73.2
Gohir.A05G047400 Gossypium hirsutum HOM05D005302 ORTHO05D006422 3.8e-205 718.4 440 73.6
SalBow4G1479 Salvia bowleyana HOM05D005302 ORTHO05D006422 4.9e-205 718.0 491 68.2
Lsat_1_v5_gn_5_33600 Lactuca sativa HOM05D005302 ORTHO05D006422 1.8e-202 709.5 422 74.9
Solyc08g068570.4 Solanum lycopersicum HOM05D005302 ORTHO05D006422 1.8e-202 709.5 467 69.0
Sopen08g022330 Solanum pennellii HOM05D005302 ORTHO05D006422 3.0e-202 708.8 467 68.7
DCAR_003119 Daucus carota HOM05D005302 ORTHO05D006422 1.4e-199 699.9 498 65.9
Lj1g0000494 Lotus japonicus HOM05D005302 ORTHO05D006422 5.3e-199 698.0 380 84.5
ClCG08G012300 Citrullus lanatus HOM05D005302 ORTHO05D006422 6.5e-197 691.0 494 66.2
ATR0315G120 Amborella trichopoda HOM05D005302 ORTHO05D006422 1.4e-194 683.3 425 71.1
CDE08G0186 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 2.3e-194 682.6 484 63.2
Os02g0276500 Oryza sativa ssp. japonica HOM05D005302 ORTHO05D006422 2.3e-194 682.6 425 71.8
unitig_32.g11070 Utricularia gibba HOM05D005302 ORTHO05D006422 1.1e-193 680.2 461 66.2
Oeu036363.2 Olea europaea HOM05D005302 ORTHO05D006422 1.3e-189 666.8 451 70.3
Nitab4.5_0000513g0060 Nicotiana tabacum HOM05D005302 ORTHO05D006422 2.5e-188 662.5 463 65.9
MBI04_g05261_MAGBIO Magnolia biondii HOM05D005302 ORTHO05D006422 2.1e-187 659.4 513 60.0
THA.LOC104803808 Tarenaya hassleriana HOM05D005302 ORTHO05D006422 3.6e-187 658.7 424 71.0
Lj1g0015489 Lotus japonicus HOM05D005302 ORTHO05D006422 1.1e-185 653.7 425 73.4
Hund19525 Selenicereus undatus HOM05D005302 ORTHO05D006422 1.5e-185 653.3 461 67.0
CDE05G0893 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 1.3e-184 650.2 433 64.9
Cpa.g.sc7.259 Carica papaya HOM05D005302 ORTHO05D006422 4.8e-184 648.3 378 75.9
AUR62041718 Chenopodium quinoa HOM05D005302 ORTHO05D006422 2.0e-182 642.9 463 65.7
Sc23g0005290 Simmondsia chinensis HOM05D005302 ORTHO05D006422 1.1e-180 637.1 447 66.9
Ah.16g105570 Amaranthus hybridus HOM05D005302 ORTHO05D006422 5.7e-177 624.8 372 75.5
Cfa013434 Carpinus fangiana HOM05D005302 ORTHO05D006422 2.5e-172 609.4 355 76.9
HPP92_005269 Vanilla planifolia HOM05D005302 ORTHO05D006422 1.2e-169 600.5 428 65.4
Cfa013357 Carpinus fangiana HOM05D005302 ORTHO05D006422 3.1e-167 592.4 428 64.3
AagrBONN_evm.TU.Sc2ySwM_368.1981 Anthoceros agrestis HOM05D005302 ORTHO05D006422 1.2e-166 590.5 417 64.0
Mapoly0027s0036 Marchantia polymorpha HOM05D005302 ORTHO05D006422 6.5e-165 584.7 429 60.4
Lj1g0026118 Lotus japonicus HOM05D005302 ORTHO05D006422 5.5e-164 581.6 426 67.6
Pp3c7_470 Physcomitrium patens HOM05D005302 ORTHO05D006422 3.6e-163 578.9 450 59.6
Haze_21992 Corylus avellana HOM05D005302 ORTHO05D006422 2.3e-162 576.2 518 55.4
vmacro11066 Vaccinium macrocarpon HOM05D005302 ORTHO05D006422 3.0e-162 575.9 438 63.7
Cfa013356 Carpinus fangiana HOM05D005302 ORTHO05D006422 2.6e-161 572.8 325 76.9
Pp3c20_5100 Physcomitrium patens HOM05D005302 ORTHO05D006422 4.5e-150 535.4 465 55.3
SMO351G0603 Selaginella moellendorffii HOM05D005302 ORTHO05D006422 8.3e-144 514.6 396 57.3
Zm00001eb237270 Zea mays HOM05D005302 ORTHO05D006422 8.0e-139 498.0 321 69.2
CBR_g222 Chara braunii HOM05D005302 ORTHO05D006422 7.5e-137 491.5 427 55.5
Cc07_g15020 Coffea canephora HOM05D005302 ORTHO05D006422 1.5e-129 467.2 269 75.5
Hma1.2p1_1884F.1_g306470 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 1.2e-121 441.0 259 76.4
Cre01.g013801 Chlamydomonas reinhardtii HOM05D005302 ORTHO05D006422 1.9e-103 380.6 455 42.2
Lj7A704G80 Lonicera japonica HOM05D005302 ORTHO05D006422 6.2e-99 365.5 218 72.0
Hma1.2p1_1884F.1_g306480 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 1.5e-81 307.8 183 73.2
MCO11G337 Micromonas commoda HOM05D005302 ORTHO05D006422 1.5e-73 281.2 426 40.6
Lj7A704G81 Lonicera japonica HOM05D005302 ORTHO05D006422 5.9e-73 279.3 162 77.2
Glyma.04G082300 Glycine max HOM05D005302 ORTHO05D006422 4.7e-62 243.0 197 65.0
Hma1.2p1_0393F.1_g143070 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 4.7e-62 243.0 148 68.9
CDE05G2043 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 2.3e-61 240.7 369 37.4
Hma1.2p1_0393F.1_g143090 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 1.0e-56 225.3 169 65.7
SEGI_29042 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 3.6e-54 216.9 110 83.6
SEGI_31241 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 2.0e-49 201.1 148 56.1
FAN24G1627 Fragaria x ananassa HOM05D005302 ORTHO05D006422 2.7e-49 200.7 118 74.6
Sabra18G0041600 Salix brachista HOM05D005302 ORTHO05D006422 1.4e-42 178.3 110 70.9
Potri.006G240100 Populus trichocarpa HOM05D005302 ORTHO05D006422 1.3e-40 171.8 184 49.5
SEGI_07805 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 1.2e-36 158.7 115 65.2
arahy.Tifrunner.gnm1.ann1.B6YE6K Arachis hypogaea HOM05D005302 ORTHO05D006422 5.6e-31 139.8 190 42.6
Sabra18G0041700 Salix brachista HOM05D005302 ORTHO05D006422 3.2e-18 97.4 60 66.7
CDE05G1694 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 2.1e-17 94.7 61 65.6
TPR.G33960 Trifolium pratense HOM05D005302 ORTHO05D006422 2.4e-10 71.2 40 82.5
BcaC09g52073 Brassica carinata HOM05D002602 ORTHO05D002661 3.6e-06 57.4 41 53.7


User provided reference genes

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