Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g020640 Pisum sativum HOM05D005974 ORTHO05D007201 2.7e-208 728.4 362 100.0
Medtr3g110360 Medicago truncatula HOM05D005974 ORTHO05D007201 6.2e-189 664.1 353 92.9
TPR.G12488 Trifolium pratense HOM05D005974 ORTHO05D007201 5.3e-188 661.0 354 91.8
Ca_15573_v3 Cicer arietinum L. HOM05D005974 ORTHO05D007201 4.9e-186 654.4 353 92.1
Lj1g0014442 Lotus japonicus HOM05D005974 ORTHO05D007201 4.3e-174 614.8 351 86.9
Glyma.06G088000 Glycine max HOM05D005974 ORTHO05D007201 2.2e-170 602.4 351 86.3
arahy.Tifrunner.gnm1.ann1.CL6SAC Arachis hypogaea HOM05D005974 ORTHO05D007201 1.5e-166 589.7 348 84.5
Glyma.04G086500 Glycine max HOM05D005974 ORTHO05D007201 2.2e-165 585.9 351 84.9
Phvul.009G111700 Phaseolus vulgaris HOM05D005974 ORTHO05D007201 1.4e-164 583.2 353 83.9
Lalb_Chr08g0242951 Lupinus albus HOM05D005974 ORTHO05D007201 2.0e-163 579.3 358 82.4
COL.COLO4_20996 Corchorus olitorius HOM05D005974 ORTHO05D007201 1.1e-158 563.5 320 84.1
Thecc.09G047600 Theobroma cacao HOM05D005974 ORTHO05D007201 3.7e-157 558.5 320 83.1
Gorai.010G105000 Gossypium raimondii HOM05D005974 ORTHO05D007201 8.2e-157 557.4 320 83.1
RcHm_v2.0_Chr6g0306611 Rosa chinensis HOM05D005974 ORTHO05D007201 7.0e-156 554.3 320 81.9
Gohir.D06G091000 Gossypium hirsutum HOM05D005974 ORTHO05D007201 1.6e-155 553.1 320 82.5
Migut.E01538 Erythranthe guttata HOM05D005974 ORTHO05D007201 2.0e-155 552.7 328 80.8
Oeu006965.1 Olea europaea HOM05D005974 ORTHO05D007201 2.0e-155 552.7 320 82.8
MSTRG.14030 Avicennia marina HOM05D005974 ORTHO05D007201 3.5e-155 552.0 328 81.4
Manes.03G060100 Manihot esculenta HOM05D005974 ORTHO05D007201 4.5e-155 551.6 335 79.7
SGA_v2.0_scaffold169G38660 Striga asiatica HOM05D005974 ORTHO05D007201 5.9e-155 551.2 320 82.2
CsaV3_3G048470 Cucumis sativus L. HOM05D005974 ORTHO05D007201 1.0e-154 550.4 361 76.7
Potri.003G158000 Populus trichocarpa HOM05D005974 ORTHO05D007201 1.3e-154 550.1 366 74.6
Cc08_g09880 Coffea canephora HOM05D005974 ORTHO05D007201 2.2e-154 549.3 325 80.6
Sabra03G0114600 Salix brachista HOM05D005974 ORTHO05D007201 3.8e-154 548.5 330 80.3
CSS0034694 Camellia sinensis var. sinensis HOM05D005974 ORTHO05D007201 8.5e-154 547.4 320 80.6
FvH4_2g35300 Fragaria vesca HOM05D005974 ORTHO05D007201 8.5e-154 547.4 336 78.3
Cpa.g.sc7.214 Carica papaya HOM05D005974 ORTHO05D007201 1.1e-153 547.0 319 82.4
Gohir.A06G091700 Gossypium hirsutum HOM05D005974 ORTHO05D007201 1.1e-153 547.0 320 81.9
CiPaw.08G027100 Carya illinoinensis HOM05D005974 ORTHO05D007201 1.5e-153 546.6 354 77.4
FAN27G3236 Fragaria x ananassa HOM05D005974 ORTHO05D007201 1.5e-153 546.6 336 78.3
TAR624G1429 Trochodendron aralioides HOM05D005974 ORTHO05D007201 2.5e-153 545.8 320 82.2
QL12p041028 Quercus lobata HOM05D005974 ORTHO05D007201 3.2e-153 545.4 328 81.4
Ciclev10010686m.g Citrus clementina HOM05D005974 ORTHO05D007201 4.2e-153 545.0 346 77.5
GSVIVG01035293001 Vitis vinifera HOM05D005974 ORTHO05D007201 4.2e-153 545.0 351 76.4
EL10Ac5g11988 Beta vulgaris HOM05D005974 ORTHO05D007201 9.4e-153 543.9 343 76.1
MELO3C003472.2 Cucumis melo HOM05D005974 ORTHO05D007201 1.2e-152 543.5 370 75.1
MD15G1090800 Malus domestica HOM05D005974 ORTHO05D007201 1.2e-152 543.5 327 78.3
HanXRQChr06g0174221 Helianthus annuus HOM05D005974 ORTHO05D007201 1.6e-152 543.1 319 81.8
FAN15G0062 Fragaria x ananassa HOM05D005974 ORTHO05D007201 2.1e-152 542.7 336 78.0
Eucgr.C02982 Eucalyptus grandis HOM05D005974 ORTHO05D007201 2.7e-152 542.3 343 77.3
PGR044G1757 Punica granatum HOM05D005974 ORTHO05D007201 2.7e-152 542.3 320 81.2
CANSAT80G2257 Cannabis sativa HOM05D005974 ORTHO05D007201 3.6e-152 542.0 328 79.6
FAN20G0082 Fragaria x ananassa HOM05D005974 ORTHO05D007201 6.1e-152 541.2 338 77.5
Dinv23389 Davidia involucrata HOM05D005974 ORTHO05D007201 8.0e-152 540.8 320 81.6
HanXRQChr17g0539061 Helianthus annuus HOM05D005974 ORTHO05D007201 8.0e-152 540.8 319 81.2
TWI63G1635 Tripterygium wilfordii HOM05D005974 ORTHO05D007201 8.0e-152 540.8 320 80.3
Solyc12g095850.2 Solanum lycopersicum HOM05D005974 ORTHO05D007201 3.0e-151 538.9 331 78.5
PGR044G0481 Punica granatum HOM05D005974 ORTHO05D007201 4.0e-151 538.5 318 81.8
THA.LOC104803747 Tarenaya hassleriana HOM05D005974 ORTHO05D007201 4.0e-151 538.5 299 84.6
Sc09g0009450 Simmondsia chinensis HOM05D005974 ORTHO05D007201 8.8e-151 537.3 335 76.7
CDE02G2857 Ceratophyllum demersum HOM05D005974 ORTHO05D007201 1.2e-150 537.0 321 78.8
Nitab4.5_0001309g0090 Nicotiana tabacum HOM05D005974 ORTHO05D007201 1.2e-150 537.0 319 79.9
Sopen12g031750 Solanum pennellii HOM05D005974 ORTHO05D007201 1.2e-150 537.0 364 72.8
Aqoxy7G01418 Aquilegia oxysepala HOM05D005974 ORTHO05D007201 1.5e-150 536.6 300 84.0
Lsat_1_v5_gn_3_25800 Lactuca sativa HOM05D005974 ORTHO05D007201 1.5e-150 536.6 364 73.9
AUR62018617 Chenopodium quinoa HOM05D005974 ORTHO05D007201 2.0e-150 536.2 298 83.9
ECA246G2549 Erigeron canadensis HOM05D005974 ORTHO05D007201 2.0e-150 536.2 364 73.9
ClCG11G015070 Citrullus lanatus HOM05D005974 ORTHO05D007201 1.7e-149 533.1 313 82.1
SalBow1G5620 Salvia bowleyana HOM05D005974 ORTHO05D007201 2.2e-149 532.7 357 72.8
CAN.G208.66 Capsicum annuum HOM05D005974 ORTHO05D007201 1.1e-148 530.4 333 76.9
arahy.Tifrunner.gnm1.ann1.I5HST9 Arachis hypogaea HOM05D005974 ORTHO05D007201 5.3e-148 528.1 317 83.9
Os01g0743400 Oryza sativa ssp. japonica HOM05D005974 ORTHO05D007201 9.1e-148 527.3 329 78.1
Rhsim02G0175300 Rhododendron simsii HOM05D005974 ORTHO05D007201 4.5e-147 525.0 320 78.8
PSO832G2350 Papaver somniferum HOM05D005974 ORTHO05D007201 5.9e-147 524.6 332 75.3
Atru.chr7.2057 Acer truncatum HOM05D005974 ORTHO05D007201 1.0e-146 523.9 320 80.0
PSO063G5342 Papaver somniferum HOM05D005974 ORTHO05D007201 1.0e-146 523.9 314 78.0
BcaC01g06194 Brassica carinata HOM05D005974 ORTHO05D007201 2.5e-145 519.2 306 80.1
BolC3t14221H Brassica oleracea HOM05D005974 ORTHO05D007201 2.5e-145 519.2 306 80.1
ATR0705G128 Amborella trichopoda HOM05D005974 ORTHO05D007201 5.5e-145 518.1 333 76.3
BcaB01g04210 Brassica carinata HOM05D005974 ORTHO05D007201 2.1e-144 516.2 304 80.3
Sp4g05700 Schrenkiella parvula HOM05D005974 ORTHO05D007201 2.7e-144 515.8 306 79.4
A03p15570 Brassica napus HOM05D005974 ORTHO05D007201 3.6e-144 515.4 306 79.7
Actinidia30286 Actinidia chinensis HOM05D005974 ORTHO05D007201 6.1e-144 514.6 320 76.6
C03p18200 Brassica napus HOM05D005974 ORTHO05D007201 1.5e-142 510.0 307 78.8
C04p55740 Brassica napus HOM05D005974 ORTHO05D007201 2.0e-142 509.6 305 79.3
A04p20060 Brassica napus HOM05D005974 ORTHO05D007201 3.4e-142 508.8 305 79.0
BraA04t17588Z Brassica rapa HOM05D005974 ORTHO05D007201 3.4e-142 508.8 305 79.0
BolC4t27100H Brassica oleracea HOM05D005974 ORTHO05D007201 9.8e-142 507.3 305 79.0
BraA03t10849Z Brassica rapa HOM05D005974 ORTHO05D007201 1.4e-140 503.4 312 77.6
Thhalv10002003m.g Eutrema salsugineum HOM05D005974 ORTHO05D007201 1.8e-140 503.1 335 72.8
VMungo1309G1913 Vigna mungo HOM05D005974 ORTHO05D007201 1.8e-140 503.1 270 90.4
Carub.0004s0567 Capsella rubella HOM05D005974 ORTHO05D007201 9.1e-140 500.7 303 77.9
AagrBONN_evm.TU.Sc2ySwM_344.1805 Anthoceros agrestis HOM05D005974 ORTHO05D007201 2.7e-139 499.2 312 76.6
AL4G17680 Arabidopsis lyrata HOM05D005974 ORTHO05D007201 2.7e-139 499.2 319 74.9
CARHR115390 Cardamine hirsuta HOM05D005974 ORTHO05D007201 4.5e-139 498.4 319 74.9
AT2G25840 Arabidopsis thaliana HOM05D005974 ORTHO05D007201 3.8e-138 495.4 319 74.3
Dinv27921 Davidia involucrata HOM05D005974 ORTHO05D007201 3.8e-138 495.4 321 75.1
Thhalv10002006m.g Eutrema salsugineum HOM05D005974 ORTHO05D007201 3.6e-136 488.8 320 74.7
Sed0012339 Sechium edule HOM05D005974 ORTHO05D007201 1.4e-135 486.9 334 74.6
Mapoly0137s0001 Marchantia polymorpha HOM05D005974 ORTHO05D007201 2.3e-135 486.1 330 71.2
Nitab4.5_0001737g0060 Nicotiana tabacum HOM05D005974 ORTHO05D007201 3.0e-135 485.7 307 77.9
BcaB06g29640 Brassica carinata HOM05D005974 ORTHO05D007201 9.8e-134 480.7 304 76.0
Aa31LG5G9820 Aethionema arabicum HOM05D005974 ORTHO05D007201 1.3e-133 480.3 338 70.1
Pp3c13_12220 Physcomitrium patens HOM05D005974 ORTHO05D007201 2.8e-133 479.2 329 69.6
Peaxi162Scf00064g01533 Petunia axillaris HOM05D005974 ORTHO05D007201 8.3e-133 477.6 296 78.4
MBI04_g20303_MAGBIO Magnolia biondii HOM05D005974 ORTHO05D007201 5.9e-131 471.5 326 73.0
Lj8C569G5 Lonicera japonica HOM05D000602 ORTHO05D001147 2.1e-128 463.0 350 67.4
HPP92_024453 Vanilla planifolia HOM05D005974 ORTHO05D007201 2.1e-128 463.0 319 71.5
vmacro11047 Vaccinium macrocarpon HOM05D005974 ORTHO05D007201 3.6e-128 462.2 381 63.0
SMO116G0397 Selaginella moellendorffii HOM05D005974 ORTHO05D007201 8.0e-128 461.1 306 71.6
DCAR_018521 Daucus carota HOM05D005974 ORTHO05D007201 1.0e-127 460.7 255 85.5
AUR62007372 Chenopodium quinoa HOM05D005974 ORTHO05D007201 2.9e-125 452.6 337 66.2
PRCOL_00006768 Prasinoderma coloniale HOM05D005974 ORTHO05D007201 5.0e-122 441.8 305 68.2
Duzib187G1338 Durio zibethinus HOM05D005974 ORTHO05D007201 3.1e-119 432.6 318 69.8
Prupe.1G445200 Prunus persica HOM05D005974 ORTHO05D007201 6.0e-115 418.3 256 78.5
SGA_v2.0_scaffold163G38058 Striga asiatica HOM05D005974 ORTHO05D007201 1.1e-113 414.1 301 68.4
MCO14G391 Micromonas commoda HOM05D005974 ORTHO05D007201 1.9e-113 413.3 330 62.7
Cre05.g238322 Chlamydomonas reinhardtii HOM05D005974 ORTHO05D007201 4.3e-113 412.1 310 62.6
Nn7g37050 Nelumbo nucifera HOM05D005974 ORTHO05D007201 3.0e-106 389.4 341 58.9
Hund14385 Selenicereus undatus HOM05D005974 ORTHO05D007201 1.5e-105 387.1 209 86.1
Zm00001eb153590 Zea mays HOM05D005974 ORTHO05D007201 3.6e-88 329.3 206 78.2
Gohir.D06G090920 Gossypium hirsutum HOM05D005974 ORTHO05D007201 2.4e-84 316.6 169 88.2
BcaB06g29641 Brassica carinata HOM05D005974 ORTHO05D007201 1.6e-83 313.9 193 78.8
HanXRQChr06g0174211 Helianthus annuus HOM05D005974 ORTHO05D007201 2.4e-76 290.0 159 84.9
Haze_27433 Corylus avellana HOM05D005974 ORTHO05D007201 1.3e-64 251.1 274 47.8
CBR_g26161 Chara braunii HOM05D005974 ORTHO05D007201 5.3e-63 245.7 161 69.6
Haze_21915 Corylus avellana HOM05D005974 ORTHO05D007201 1.3e-45 188.0 123 78.9
Cfa024571 Carpinus fangiana HOM05D005974 ORTHO05D007201 3.9e-42 176.4 366 34.7
Ah.07g201090 Amaranthus hybridus HOM05D005974 ORTHO05D007201 1.2e-38 164.9 93 80.6
SEGI_40033 Sequoiadendron giganteum HOM05D005974 ORTHO05D007201 1.6e-30 137.9 85 70.6
CDE08G1286 Ceratophyllum demersum HOM05D000581 ORTHO05D000412 5.5e-28 129.4 74 81.1
Lsat_1_v5_gn_5_27580 Lactuca sativa HOM05D005974 ORTHO05D007201 4.0e-26 123.2 72 75.0
SEGI_31887 Sequoiadendron giganteum HOM05D005974 ORTHO05D007201 1.0e-18 98.6 57 71.9
Gohir.A05G045550 Gossypium hirsutum HOM05D005974 ORTHO05D007201 8.3e-16 89.0 74 66.2
Hund30885 Selenicereus undatus HOM05D005974 ORTHO05D007201 3.5e-14 83.6 88 50.0
Hund30611 Selenicereus undatus HOM05D005974 ORTHO05D007201 7.8e-14 82.4 88 48.9
arahy.Tifrunner.gnm1.ann1.8YH8YH Arachis hypogaea HOM05D005974 ORTHO05D007201 1.9e-12 77.8 93 48.4
Gohir.D06G090940 Gossypium hirsutum HOM05D005974 ORTHO05D007201 2.5e-12 77.4 44 75.0
Lsat_1_v5_gn_1_66781 Lactuca sativa HOM05D000921 ORTHO05D002852 1.6e-11 74.7 112 44.6
Lsat_1_v5_gn_9_95260 Lactuca sativa HOM05D005974 ORTHO05D007201 6.1e-11 72.8 120 36.7
VMungo1309G1904 Vigna mungo HOM05D005974 ORTHO05D007201 7.5e-09 65.9 31 90.3
CBR_g26165 Chara braunii HOM05D005974 ORTHO05D007201 5.4e-07 59.7 38 76.3


User provided reference genes

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