Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g020280 Pisum sativum HOM05D004918 ORTHO05D005706 3.5e-132 474.9 239 100.0
TPR.G15094 Trifolium pratense HOM05D004918 ORTHO05D005706 3.3e-106 388.7 239 82.0
Medtr3g110270 Medicago truncatula HOM05D004918 ORTHO05D005706 1.1e-101 373.6 213 86.9
Lj6g0018730 Lotus japonicus HOM05D004918 ORTHO05D005706 4.7e-100 368.2 239 77.0
VMungo1309G0542 Vigna mungo HOM05D004918 ORTHO05D005706 1.3e-94 350.1 239 75.7
Glyma.09G000800 Glycine max HOM05D004918 ORTHO05D005706 5.5e-93 344.7 221 76.5
Phvul.009G194500 Phaseolus vulgaris HOM05D004918 ORTHO05D005706 3.4e-90 335.5 222 73.9
Lalb_Chr13g0301111 Lupinus albus HOM05D004918 ORTHO05D005706 9.1e-88 327.4 241 71.0
arahy.Tifrunner.gnm1.ann1.T9YNFF Arachis hypogaea HOM05D004918 ORTHO05D005706 5.2e-83 311.6 212 73.1
TAR625G0238 Trochodendron aralioides HOM05D004918 ORTHO05D005706 3.3e-77 292.4 214 63.1
ClCG10G012810 Citrullus lanatus HOM05D004918 ORTHO05D005706 5.6e-77 291.6 218 61.5
Actinidia25464 Actinidia chinensis HOM05D004918 ORTHO05D005706 1.2e-76 290.4 224 61.2
Glyma.09G000900 Glycine max HOM05D004918 ORTHO05D005706 1.0e-75 287.3 168 81.5
Dinv23270 Davidia involucrata HOM05D004918 ORTHO05D005706 1.4e-75 287.0 224 62.5
Atru.chr1.2801 Acer truncatum HOM05D004918 ORTHO05D005706 1.2e-74 283.9 213 63.4
Cfa001859 Carpinus fangiana HOM05D004918 ORTHO05D005706 1.2e-74 283.9 232 60.8
GSVIVG01016107001 Vitis vinifera HOM05D004918 ORTHO05D005706 1.5e-74 283.5 211 61.6
arahy.Tifrunner.gnm1.ann1.ZUNL57 Arachis hypogaea HOM05D004918 ORTHO05D005706 2.6e-74 282.7 238 64.7
Prupe.3G103300 Prunus persica HOM05D004918 ORTHO05D005706 3.4e-74 282.3 228 60.1
CsaV3_3G032650 Cucumis sativus L. HOM05D004918 ORTHO05D005706 2.9e-73 279.3 220 58.2
DCAR_025541 Daucus carota HOM05D004918 ORTHO05D005706 2.9e-73 279.3 214 61.2
CSS0025832 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 6.4e-73 278.1 209 64.1
Sed0025979 Sechium edule HOM05D004918 ORTHO05D005706 6.4e-73 278.1 252 54.0
Potri.003G184701 Populus trichocarpa HOM05D004918 ORTHO05D005706 1.4e-72 276.9 209 64.1
TWI12G0375 Tripterygium wilfordii HOM05D004918 ORTHO05D005706 1.8e-72 276.6 236 57.2
Hma1.2p1_1914F.1_g307380 Hydrangea macrophylla HOM05D004918 ORTHO05D005706 4.1e-72 275.4 209 63.2
CiPaw.01G073400 Carya illinoinensis HOM05D004918 ORTHO05D005706 5.4e-72 275.0 215 63.3
Peaxi162Scf00314g01045 Petunia axillaris HOM05D004918 ORTHO05D005706 7.0e-72 274.6 213 60.1
Ciclev10026430m.g Citrus clementina HOM05D004918 ORTHO05D005706 1.6e-71 273.5 213 60.1
Nn2g12451 Nelumbo nucifera HOM05D004918 ORTHO05D005706 1.6e-71 273.5 225 56.4
QL10p031453 Quercus lobata HOM05D004918 ORTHO05D005706 2.0e-71 273.1 193 67.4
CiPaw.02G163500 Carya illinoinensis HOM05D004918 ORTHO05D005706 2.7e-71 272.7 213 62.4
Nitab4.5_0002700g0180 Nicotiana tabacum HOM05D004918 ORTHO05D005706 3.5e-71 272.3 239 55.2
Gohir.A05G117500 Gossypium hirsutum HOM05D004918 ORTHO05D005706 4.6e-71 271.9 213 59.2
Sabra03G0135200 Salix brachista HOM05D004918 ORTHO05D005706 4.6e-71 271.9 209 62.7
Duzib192G0308 Durio zibethinus HOM05D004918 ORTHO05D005706 6.0e-71 271.6 213 60.1
Gorai.009G122300 Gossypium raimondii HOM05D004918 ORTHO05D005706 6.0e-71 271.6 213 59.2
Manes.11G069000 Manihot esculenta HOM05D004918 ORTHO05D005706 7.8e-71 271.2 227 57.3
Atru.chr8.1159 Acer truncatum HOM05D004918 ORTHO05D005706 1.3e-70 270.4 218 59.6
Nn2g14031 Nelumbo nucifera HOM05D004918 ORTHO05D005706 1.3e-70 270.4 237 54.4
PGR102G0155 Punica granatum HOM05D004918 ORTHO05D005706 3.9e-70 268.9 222 59.5
Sc05g0005820 Simmondsia chinensis HOM05D004918 ORTHO05D005706 8.6e-70 267.7 205 62.0
Cpa.g.sc14.108 Carica papaya HOM05D004918 ORTHO05D005706 1.1e-69 267.3 205 61.0
CANSAT35G0550 Cannabis sativa HOM05D004918 ORTHO05D005706 4.3e-69 265.4 216 59.3
MD12G1013200 Malus domestica HOM05D004918 ORTHO05D005706 4.3e-69 265.4 223 57.8
Thecc.06G046100 Theobroma cacao HOM05D004918 ORTHO05D005706 4.3e-69 265.4 213 58.7
Nitab4.5_0004738g0120 Nicotiana tabacum HOM05D004918 ORTHO05D005706 3.6e-68 262.3 245 53.1
Sopen03g036560 Solanum pennellii HOM05D004918 ORTHO05D005706 1.1e-67 260.8 225 56.4
MD14G1138800 Malus domestica HOM05D004918 ORTHO05D005706 1.4e-67 260.4 225 57.3
RcHm_v2.0_Chr2g0132361 Rosa chinensis HOM05D004918 ORTHO05D005706 3.1e-67 259.2 213 58.7
Aa31LG7G620 Aethionema arabicum HOM05D004918 ORTHO05D005706 2.0e-66 256.5 203 57.1
Cc04_g05280 Coffea canephora HOM05D004918 ORTHO05D005706 2.6e-66 256.1 213 58.2
Eucgr.F03982 Eucalyptus grandis HOM05D004918 ORTHO05D005706 5.8e-66 255.0 226 56.6
PGSC0003DMG400014153 Solanum tuberosum HOM05D004918 ORTHO05D005706 5.8e-66 255.0 225 55.6
Carub.0001s1585 Capsella rubella HOM05D004918 ORTHO05D005706 1.3e-65 253.8 200 57.5
Migut.I00673 Erythranthe guttata HOM05D004918 ORTHO05D005706 8.3e-65 251.1 221 53.4
CARHR016550 Cardamine hirsuta HOM05D004918 ORTHO05D005706 1.1e-64 250.8 214 54.7
Cc04_g05650 Coffea canephora HOM05D004918 ORTHO05D005706 2.4e-64 249.6 237 53.6
Oeu004556.1 Olea europaea HOM05D004918 ORTHO05D005706 2.4e-64 249.6 198 57.1
AL1G28210 Arabidopsis lyrata HOM05D004918 ORTHO05D005706 5.4e-64 248.4 210 53.3
ECA232G4560 Erigeron canadensis HOM05D004918 ORTHO05D005706 1.6e-63 246.9 213 55.9
Thhalv10008658m.g Eutrema salsugineum HOM05D004918 ORTHO05D005706 1.6e-63 246.9 210 55.2
BcaB03g14507 Brassica carinata HOM05D004918 ORTHO05D005706 2.7e-63 246.1 196 56.1
A08p31410 Brassica napus HOM05D004918 ORTHO05D005706 2.7e-63 246.1 197 57.4
BraA08t35064Z Brassica rapa HOM05D004918 ORTHO05D005706 2.7e-63 246.1 197 57.4
C08p44630 Brassica napus HOM05D000031 ORTHO05D007294 4.6e-63 245.4 196 56.6
FAN09G4697 Fragaria x ananassa HOM05D004918 ORTHO05D005706 4.6e-63 245.4 225 54.7
MELO3C028676.2 Cucumis melo HOM05D004918 ORTHO05D005706 1.0e-62 244.2 203 54.7
SGA_v2.0_scaffold419G51286 Striga asiatica HOM05D004918 ORTHO05D005706 2.3e-62 243.0 229 51.5
PSO724G0600 Papaver somniferum HOM05D004918 ORTHO05D005706 3.0e-62 242.7 213 51.6
PSO729G0217 Papaver somniferum HOM05D004918 ORTHO05D005706 3.0e-62 242.7 213 51.6
A06p12070 Brassica napus HOM05D004918 ORTHO05D005706 5.0e-62 241.9 196 56.6
Sp1g14360 Schrenkiella parvula HOM05D004918 ORTHO05D005706 6.6e-62 241.5 196 57.7
C05p14240 Brassica napus HOM05D004918 ORTHO05D005706 8.6e-62 241.1 196 56.6
CDE02G0643 Ceratophyllum demersum HOM05D004918 ORTHO05D005706 8.6e-62 241.1 219 53.4
PSO017G2949 Papaver somniferum HOM05D004918 ORTHO05D005706 8.6e-62 241.1 213 51.6
PSO063G6564 Papaver somniferum HOM05D004918 ORTHO05D005706 1.5e-61 240.4 213 50.2
BcaC05g25623 Brassica carinata HOM05D004918 ORTHO05D005706 2.5e-61 239.6 196 56.1
BraA06t24376Z Brassica rapa HOM05D004918 ORTHO05D005706 3.3e-61 239.2 197 56.3
THA.LOC104808174 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 4.3e-61 238.8 218 52.8
AT1G16040 Arabidopsis thaliana HOM05D004918 ORTHO05D005706 5.6e-61 238.4 189 56.6
MSTRG.22808 Avicennia marina HOM05D004918 ORTHO05D005706 2.1e-60 236.5 221 50.7
A09p61040 Brassica napus HOM05D004918 ORTHO05D005706 2.8e-60 236.1 216 52.8
BraA09t41477Z Brassica rapa HOM05D004918 ORTHO05D005706 2.8e-60 236.1 216 52.8
C08p17380 Brassica napus HOM05D004918 ORTHO05D005706 3.6e-60 235.7 196 56.1
BolC8t49364H Brassica oleracea HOM05D004918 ORTHO05D005706 3.6e-60 235.7 196 56.1
THA.LOC104812419 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 4.7e-60 235.3 233 48.9
BcaC07g38802 Brassica carinata HOM05D004918 ORTHO05D005706 6.2e-60 235.0 196 55.6
BolC5t30156H Brassica oleracea HOM05D004918 ORTHO05D005706 8.1e-60 234.6 197 55.8
BcaB02g06654 Brassica carinata HOM05D004918 ORTHO05D005706 1.1e-59 234.2 218 51.4
SalBow8G2778 Salvia bowleyana HOM05D004918 ORTHO05D005706 1.1e-59 234.2 216 49.5
Solyc03g117650.4 Solanum lycopersicum HOM05D004918 ORTHO05D005706 2.3e-59 233.0 213 54.5
Rhsim08G0203200 Rhododendron simsii HOM05D004918 ORTHO05D005706 4.0e-59 232.3 177 61.6
PGSC0003DMG402014462 Solanum tuberosum HOM05D004918 ORTHO05D005706 5.2e-59 231.9 214 52.8
HanXRQChr17g0561891 Helianthus annuus HOM05D004918 ORTHO05D005706 1.2e-58 230.7 213 54.9
Ah.01g002790 Amaranthus hybridus HOM05D004918 ORTHO05D005706 1.5e-58 230.3 189 51.9
FAN02G2144 Fragaria x ananassa HOM05D004918 ORTHO05D005706 2.0e-58 229.9 236 51.3
HanXRQChr10g0298641 Helianthus annuus HOM05D004918 ORTHO05D005706 2.9e-57 226.1 197 55.8
MBI19_g12142_MAGBIO Magnolia biondii HOM05D004918 ORTHO05D005706 4.9e-57 225.3 213 52.1
Lsat_1_v5_gn_4_85101 Lactuca sativa HOM05D004918 ORTHO05D005706 1.1e-56 224.2 174 58.0
BolC8t52009H Brassica oleracea HOM05D000031 ORTHO05D007294 2.1e-55 219.9 221 48.4
BcaB03g13048 Brassica carinata HOM05D004918 ORTHO05D005706 1.7e-54 216.9 246 47.2
Sopen12g021620 Solanum pennellii HOM05D004918 ORTHO05D005706 6.6e-54 214.9 214 48.1
SalBow8G2909 Salvia bowleyana HOM05D004918 ORTHO05D005706 8.6e-54 214.5 185 51.4
COL.COLO4_24896 Corchorus olitorius HOM05D004918 ORTHO05D005706 5.6e-53 211.8 207 48.8
HanXRQChr16g0499441 Helianthus annuus HOM05D004918 ORTHO05D005706 5.6e-53 211.8 203 53.7
SEGI_14369 Sequoiadendron giganteum HOM05D004918 ORTHO05D005706 7.3e-53 211.5 192 50.5
HPP92_001544 Vanilla planifolia HOM05D004918 ORTHO05D005706 9.5e-53 211.1 196 53.6
arahy.Tifrunner.gnm1.ann1.BN6NH6 Arachis hypogaea HOM05D004918 ORTHO05D005706 3.6e-52 209.1 236 53.0
Haze_16687 Corylus avellana HOM05D004918 ORTHO05D005706 1.1e-51 207.6 195 54.9
FAN09G3573 Fragaria x ananassa HOM05D004918 ORTHO05D005706 1.8e-51 206.8 234 49.1
Solyc12g042530.2 Solanum lycopersicum HOM05D004918 ORTHO05D005706 1.8e-51 206.8 214 46.7
Ca_15577_v3 Cicer arietinum L. HOM05D004918 ORTHO05D005706 2.4e-51 206.5 108 89.8
Oeu035883.1 Olea europaea HOM05D004918 ORTHO05D005706 3.1e-51 206.1 174 55.2
vmacro19072 Vaccinium macrocarpon HOM05D004918 ORTHO05D005706 5.2e-51 205.3 207 50.7
arahy.Tifrunner.gnm1.ann1.U5XJV3 Arachis hypogaea HOM05D004918 ORTHO05D005706 8.9e-51 204.5 234 52.6
CAN.G276.2 Capsicum annuum HOM05D004918 ORTHO05D005706 2.0e-50 203.4 165 60.6
ATR0568G024 Amborella trichopoda HOM05D004918 ORTHO05D005706 1.9e-48 196.8 161 55.3
Zm00001eb403520 Zea mays HOM05D004918 ORTHO05D005706 3.5e-47 192.6 210 46.2
Os03g0129000 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 4.6e-47 192.2 233 42.9
SHI05687 Sapria himalayana HOM05D004918 ORTHO05D005706 2.3e-46 189.9 182 48.4
Aqoxy4G02614 Aquilegia oxysepala HOM05D004918 ORTHO05D005706 3.4e-42 176.0 133 59.4
unitig_62.g23577 Utricularia gibba HOM05D004918 ORTHO05D005706 1.9e-40 170.2 250 40.4
FAN14G3036 Fragaria x ananassa HOM05D004918 ORTHO05D005706 3.2e-40 169.5 254 42.5
Mapoly0005s0096 Marchantia polymorpha HOM05D004918 ORTHO05D005706 5.4e-40 168.7 201 38.3
Pp3c8_15970 Physcomitrium patens HOM05D004918 ORTHO05D005706 2.1e-39 166.8 217 41.5
EL10Ac4g09605 Beta vulgaris HOM05D004918 ORTHO05D005706 1.7e-38 163.7 190 44.2
CBR_g41678 Chara braunii HOM05D004918 ORTHO05D005706 1.7e-38 163.7 126 54.8
CAN.G1008.5 Capsicum annuum HOM05D000348 ORTHO05D005706 5.1e-38 162.2 179 46.9
FvH4_6g28300 Fragaria vesca HOM05D004918 ORTHO05D005706 4.8e-36 155.6 135 58.5
SMO351G0301 Selaginella moellendorffii HOM05D004918 ORTHO05D005706 2.4e-27 126.7 150 42.0
AagrBONN_evm.TU.Sc2ySwM_344.4108 Anthoceros agrestis HOM05D004918 ORTHO05D005706 2.4e-24 116.7 80 56.2
Gohir.D05G118400 Gossypium hirsutum HOM05D004918 ORTHO05D005706 3.0e-22 109.8 105 52.4
Sed0005872 Sechium edule HOM05D004918 ORTHO05D005706 1.3e-20 104.4 94 57.4
Os10g0200800 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 8.2e-20 101.7 64 62.5
MELO3C000966.2 Cucumis melo HOM05D004918 ORTHO05D005706 4.0e-19 99.4 88 54.5
CAN.G548.17 Capsicum annuum HOM05D002478 ORTHO05D005706 2.6e-18 96.7 58 69.0
CAN.G1986.5 Capsicum annuum HOM05D004918 ORTHO05D005706 1.0e-17 94.7 89 50.6
CAN.G53.21 Capsicum annuum HOM05D002478 ORTHO05D020307 8.4e-17 91.7 52 71.2
CAN.G829.5 Capsicum annuum HOM05D004534 ORTHO05D005706 5.5e-16 89.0 73 52.1
BcaC05g25622 Brassica carinata HOM05D004918 ORTHO05D005706 2.5e-13 80.1 40 75.0
CSS0035645 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 5.7e-13 79.0 80 51.2
MELO3C032630.2 Cucumis melo HOM05D004918 ORTHO05D005706 1.3e-12 77.8 73 52.1
Zm00001eb002240 Zea mays HOM05D004918 ORTHO05D005706 1.8e-11 73.9 95 45.3
Cfa026120 Carpinus fangiana HOM05D004918 ORTHO05D125238 2.4e-11 73.6 132 33.3
CSS0004145 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 3.4e-10 69.7 79 46.8
BcaC03g14995 Brassica carinata HOM05D004918 ORTHO05D005706 5.9e-10 68.9 51 51.0
Actinidia08937 Actinidia chinensis HOM05D004918 ORTHO05D005706 1.9e-08 63.9 50 58.0
CAN.G1235.23 Capsicum annuum HOM05D004918 ORTHO05D005706 2.5e-08 63.5 35 68.6
AUR62034078 Chenopodium quinoa HOM05D004918 ORTHO05D005706 3.2e-08 63.2 70 47.1
AUR62012861 Chenopodium quinoa HOM05D004918 ORTHO05D005706 1.4e-06 57.8 51 51.0
MBI02_g02973_MAGBIO Magnolia biondii HOM05D000955 ORTHO05D003340 2.3e-06 57.0 45 53.3
MCO15G581 Micromonas commoda HOM05D004918 ORTHO05D005706 2.3e-06 57.0 155 27.1
Actinidia18259 Actinidia chinensis HOM05D004918 ORTHO05D005706 5.1e-06 55.8 52 55.8


User provided reference genes

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