Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g017920 Pisum sativum HOM05D005492 ORTHO05D006911 9.6e-103 376.7 175 100.0
Medtr3g111110 Medicago truncatula HOM05D005492 ORTHO05D006911 1.1e-101 373.2 175 98.3
VMungo1309G2191 Vigna mungo HOM05D005492 ORTHO05D006911 2.6e-100 368.6 175 96.6
Potri.002G107600 Populus trichocarpa HOM05D005492 ORTHO05D006911 5.8e-100 367.5 175 95.4
TPR.G12370 Trifolium pratense HOM05D005492 ORTHO05D006911 7.6e-100 367.1 175 96.6
Ca_15548_v3 Cicer arietinum L. HOM05D005492 ORTHO05D006911 1.3e-99 366.3 175 96.0
Lj1g0026792 Lotus japonicus HOM05D005492 ORTHO05D006911 1.3e-99 366.3 175 96.0
Sabra02G0084500 Salix brachista HOM05D005492 ORTHO05D006911 1.3e-99 366.3 175 94.9
QL12p040192 Quercus lobata HOM05D005492 ORTHO05D006911 1.7e-99 365.9 174 96.0
MD15G1393200 Malus domestica HOM05D005492 ORTHO05D006911 2.9e-99 365.2 175 94.3
arahy.Tifrunner.gnm1.ann1.7IN1UY Arachis hypogaea HOM05D005492 ORTHO05D006911 4.9e-99 364.4 175 95.4
arahy.Tifrunner.gnm1.ann1.EMS59G Arachis hypogaea HOM05D005492 ORTHO05D006911 4.9e-99 364.4 175 95.4
TWI12G1341 Tripterygium wilfordii HOM05D005492 ORTHO05D006911 4.9e-99 364.4 175 94.3
CANSAT35G2015 Cannabis sativa HOM05D005492 ORTHO05D006911 8.4e-99 363.6 175 94.9
CiPaw.15G151700 Carya illinoinensis HOM05D005492 ORTHO05D006911 8.4e-99 363.6 175 93.7
Glyma.06G091400 Glycine max HOM05D005492 ORTHO05D006911 8.4e-99 363.6 176 95.5
Gohir.D06G028400 Gossypium hirsutum HOM05D005492 ORTHO05D006911 1.1e-98 363.2 175 94.9
Lalb_Chr08g0242711 Lupinus albus HOM05D005492 ORTHO05D006911 1.1e-98 363.2 175 94.9
Glyma.04G089600 Glycine max HOM05D005492 ORTHO05D006911 1.4e-98 362.8 176 95.5
Gohir.A05G264075 Gossypium hirsutum HOM05D005492 ORTHO05D006911 1.4e-98 362.8 175 94.9
Gohir.D05G266500 Gossypium hirsutum HOM05D005492 ORTHO05D006911 1.4e-98 362.8 175 94.9
Gorai.009G278400 Gossypium raimondii HOM05D005492 ORTHO05D006911 1.4e-98 362.8 175 94.9
RcHm_v2.0_Chr7g0232851 Rosa chinensis HOM05D005492 ORTHO05D006911 1.4e-98 362.8 175 94.9
Gohir.A06G029400 Gossypium hirsutum HOM05D005492 ORTHO05D006911 2.5e-98 362.1 175 94.3
MD08G1209200 Malus domestica HOM05D005492 ORTHO05D006911 3.2e-98 361.7 175 93.7
Manes.18G054601 Manihot esculenta HOM05D005492 ORTHO05D006911 3.2e-98 361.7 175 94.3
Carub.0001s2610 Capsella rubella HOM05D005492 ORTHO05D006911 5.5e-98 360.9 175 93.7
Gorai.010G031300 Gossypium raimondii HOM05D005492 ORTHO05D006911 5.5e-98 360.9 175 94.3
CARHR027130 Cardamine hirsuta HOM05D005492 ORTHO05D006911 7.1e-98 360.5 175 93.7
Prupe.1G541400 Prunus persica HOM05D005492 ORTHO05D006911 7.1e-98 360.5 175 93.7
AL1G40960 Arabidopsis lyrata HOM05D005492 ORTHO05D006911 9.3e-98 360.1 175 93.7
AT1G27530 Arabidopsis thaliana HOM05D005492 ORTHO05D006911 9.3e-98 360.1 175 93.7
Cfa020694 Carpinus fangiana HOM05D005492 ORTHO05D006911 1.2e-97 359.8 175 93.7
COL.COLO4_35339 Corchorus olitorius HOM05D005492 ORTHO05D006911 1.2e-97 359.8 175 93.7
Haze_18999 Corylus avellana HOM05D005492 ORTHO05D006911 1.2e-97 359.8 175 93.7
FAN08G0693 Fragaria x ananassa HOM05D005492 ORTHO05D006911 1.6e-97 359.4 175 93.7
FAN18G0360 Fragaria x ananassa HOM05D005492 ORTHO05D006911 1.6e-97 359.4 175 93.7
Thecc.08G078100 Theobroma cacao HOM05D005492 ORTHO05D006911 1.6e-97 359.4 175 93.1
CsaV3_3G048290 Cucumis sativus L. HOM05D005492 ORTHO05D006911 2.7e-97 358.6 175 92.0
FAN04G2818 Fragaria x ananassa HOM05D005492 ORTHO05D006911 2.7e-97 358.6 175 93.1
THA.LOC104800327 Tarenaya hassleriana HOM05D005492 ORTHO05D006911 3.5e-97 358.2 175 93.1
TWI32G1091 Tripterygium wilfordii HOM05D005492 ORTHO05D006911 3.5e-97 358.2 175 92.6
Ciclev10002666m.g Citrus clementina HOM05D005492 ORTHO05D006911 4.6e-97 357.8 175 93.1
PGR083G0175 Punica granatum HOM05D005492 ORTHO05D006911 4.6e-97 357.8 175 92.0
Cpa.g.sc160.3 Carica papaya HOM05D005492 ORTHO05D006911 7.9e-97 357.1 175 92.6
Duzib041G0144 Durio zibethinus HOM05D005492 ORTHO05D006911 7.9e-97 357.1 175 93.1
TAR628G0115 Trochodendron aralioides HOM05D005492 ORTHO05D006911 1.0e-96 356.7 175 93.1
Sp1g23790 Schrenkiella parvula HOM05D005492 ORTHO05D006911 1.3e-96 356.3 175 92.6
Dinv44895 Davidia involucrata HOM05D005492 ORTHO05D006911 2.3e-96 355.5 175 92.0
Eucgr.F00462 Eucalyptus grandis HOM05D005492 ORTHO05D006911 2.3e-96 355.5 175 92.6
BolC3t19680H Brassica oleracea HOM05D005492 ORTHO05D006911 3.0e-96 355.1 175 92.6
Duzib041G0066 Durio zibethinus HOM05D005492 ORTHO05D006911 3.0e-96 355.1 175 92.6
A07p11710 Brassica napus HOM05D005492 ORTHO05D006911 3.9e-96 354.8 175 92.6
A08p26210 Brassica napus HOM05D005492 ORTHO05D006911 3.9e-96 354.8 175 92.6
BolC7t42275H Brassica oleracea HOM05D005492 ORTHO05D006911 3.9e-96 354.8 175 92.6
BraA07t28956Z Brassica rapa HOM05D005492 ORTHO05D006911 3.9e-96 354.8 175 92.6
BraA08t34572Z Brassica rapa HOM05D005492 ORTHO05D006911 3.9e-96 354.8 175 92.6
Dinv22020 Davidia involucrata HOM05D005492 ORTHO05D006911 3.9e-96 354.8 175 92.0
PSO210G2227 Papaver somniferum HOM05D005492 ORTHO05D006911 3.9e-96 354.8 175 93.1
PSO761G0095 Papaver somniferum HOM05D005492 ORTHO05D006911 3.9e-96 354.8 175 93.1
BcaC01g06944 Brassica carinata HOM05D005492 ORTHO05D006911 5.1e-96 354.4 175 92.0
C03p74220 Brassica napus HOM05D005492 ORTHO05D006911 6.7e-96 354.0 175 92.0
C07p17680 Brassica napus HOM05D005492 ORTHO05D006911 8.7e-96 353.6 175 92.0
BcaC01g01601 Brassica carinata HOM05D005492 ORTHO05D006911 1.1e-95 353.2 175 92.0
MBI16_g26726_MAGBIO Magnolia biondii HOM05D005492 ORTHO05D006911 1.1e-95 353.2 175 90.9
Nitab4.5_0000377g0170 Nicotiana tabacum HOM05D005492 ORTHO05D006911 1.1e-95 353.2 175 91.4
Nitab4.5_0005557g0040 Nicotiana tabacum HOM05D005492 ORTHO05D006911 1.1e-95 353.2 175 91.4
Actinidia19266 Actinidia chinensis HOM05D005492 ORTHO05D006911 1.5e-95 352.8 175 91.4
Hma1.2p1_1548F.1_g290020 Hydrangea macrophylla HOM05D005492 ORTHO05D006911 1.5e-95 352.8 173 91.3
BcaC05g26754 Brassica carinata HOM05D005492 ORTHO05D006911 1.9e-95 352.4 175 92.0
vmacro04619 Vaccinium macrocarpon HOM05D005492 ORTHO05D006911 1.9e-95 352.4 174 89.7
MSTRG.24417 Avicennia marina HOM05D005492 ORTHO05D006911 2.5e-95 352.1 174 91.4
CAN.G723.31 Capsicum annuum HOM05D005492 ORTHO05D006911 2.5e-95 352.1 175 90.9
vmacro21373 Vaccinium macrocarpon HOM05D005492 ORTHO05D006911 2.5e-95 352.1 175 91.4
Aqoxy5G01947 Aquilegia oxysepala HOM05D005492 ORTHO05D006911 3.3e-95 351.7 175 91.4
BcaC06g35300 Brassica carinata HOM05D005492 ORTHO05D006911 3.3e-95 351.7 175 92.0
Thhalv10008910m.g Eutrema salsugineum HOM05D005492 ORTHO05D006911 3.3e-95 351.7 175 90.9
CSS0048416 Camellia sinensis var. sinensis HOM05D005492 ORTHO05D006911 5.7e-95 350.9 175 90.9
Sed0023469 Sechium edule HOM05D005492 ORTHO05D006911 5.7e-95 350.9 175 90.3
Actinidia10257 Actinidia chinensis HOM05D005492 ORTHO05D006911 7.4e-95 350.5 175 90.9
Aa31LG7G10120 Aethionema arabicum HOM05D005492 ORTHO05D006911 7.4e-95 350.5 174 92.5
BcaB03g13980 Brassica carinata HOM05D005492 ORTHO05D006911 7.4e-95 350.5 175 91.4
Solyc04g076890.4 Solanum lycopersicum HOM05D005492 ORTHO05D006911 1.6e-94 349.4 175 90.3
Sopen04g030660 Solanum pennellii HOM05D005492 ORTHO05D006911 1.6e-94 349.4 175 90.3
PGSC0003DMG400006380 Solanum tuberosum HOM05D005492 ORTHO05D006911 1.6e-94 349.4 175 90.3
Duzib116G0911 Durio zibethinus HOM05D005492 ORTHO05D006911 2.1e-94 349.0 177 90.4
Oeu002945.1 Olea europaea HOM05D005492 ORTHO05D006911 2.1e-94 349.0 175 90.3
Oeu026363.1 Olea europaea HOM05D005492 ORTHO05D006911 3.7e-94 348.2 175 90.3
SGA_v2.0_scaffold28G11869 Striga asiatica HOM05D005492 ORTHO05D006911 4.8e-94 347.8 174 89.7
CDE04G0412 Ceratophyllum demersum HOM05D005492 ORTHO05D006911 1.4e-93 346.3 175 88.6
Cc10_g08150 Coffea canephora HOM05D005492 ORTHO05D006911 1.4e-93 346.3 173 91.3
HanXRQChr01g0001771 Helianthus annuus HOM05D005492 ORTHO05D006911 1.4e-93 346.3 175 90.3
GSVIVG01009242001 Vitis vinifera HOM05D005492 ORTHO05D006911 1.4e-93 346.3 175 90.3
Lsat_1_v5_gn_9_81101 Lactuca sativa HOM05D005492 ORTHO05D006911 2.4e-93 345.5 174 89.7
Atru.BG.248.p Acer truncatum HOM05D005492 ORTHO05D006911 9.0e-93 343.6 174 90.2
Ah.00g000130 Amaranthus hybridus HOM05D005492 ORTHO05D006911 9.0e-93 343.6 175 88.6
Migut.N02829 Erythranthe guttata HOM05D005492 ORTHO05D006911 9.0e-93 343.6 174 88.5
Migut.O00437 Erythranthe guttata HOM05D005492 ORTHO05D006911 9.0e-93 343.6 174 88.5
Lj4A81T75 Lonicera japonica HOM05D005492 ORTHO05D006911 1.2e-92 343.2 173 89.6
Sc02g0008380 Simmondsia chinensis HOM05D005492 ORTHO05D006911 1.5e-92 342.8 175 88.6
Rhsim07G0214900 Rhododendron simsii HOM05D005492 ORTHO05D006911 3.4e-92 341.7 175 88.6
unitig_8.g4867 Utricularia gibba HOM05D002193 ORTHO05D002631 3.4e-92 341.7 171 88.3
ECA232G4293 Erigeron canadensis HOM05D005492 ORTHO05D006911 7.6e-92 340.5 175 88.6
MSTRG.22188 Avicennia marina HOM05D005492 ORTHO05D006911 1.0e-91 340.1 173 91.3
AUR62035408 Chenopodium quinoa HOM05D005492 ORTHO05D006911 6.5e-91 337.4 172 88.4
AUR62035696 Chenopodium quinoa HOM05D005492 ORTHO05D006911 6.5e-91 337.4 172 88.4
TAR381G0934 Trochodendron aralioides HOM05D005492 ORTHO05D006911 1.9e-90 335.9 175 88.6
HPP92_010753 Vanilla planifolia HOM05D005492 ORTHO05D006911 9.7e-87 323.6 175 82.9
SEGI_29138 Sequoiadendron giganteum HOM05D005492 ORTHO05D006911 4.8e-86 321.2 175 81.1
Hund05232 Selenicereus undatus HOM05D005492 ORTHO05D006911 1.1e-85 320.1 244 65.6
ATR0767G107 Amborella trichopoda HOM05D005492 ORTHO05D006911 3.4e-84 315.1 173 82.7
Os10g0205200 Oryza sativa ssp. japonica HOM05D005492 ORTHO05D006911 3.2e-82 308.5 174 77.6
Zm00001eb010950 Zea mays HOM05D005492 ORTHO05D006911 7.2e-82 307.4 174 76.4
Mapoly0013s0107 Marchantia polymorpha HOM05D005492 ORTHO05D006911 4.6e-81 304.7 176 77.8
ClCG11G014860 Citrullus lanatus HOM05D005492 ORTHO05D006911 1.8e-80 302.8 150 89.3
Peaxi162Scf00626g00718 Petunia axillaris HOM05D005492 ORTHO05D006911 8.8e-80 300.4 181 80.7
CBR_g37394 Chara braunii HOM05D005492 ORTHO05D006911 1.3e-78 296.6 173 76.3
Pp3c16_2350 Physcomitrium patens HOM05D005492 ORTHO05D006911 2.0e-76 289.3 175 73.1
Phvul.009G146200 Phaseolus vulgaris HOM05D005492 ORTHO05D006911 7.2e-74 280.8 131 96.9
PRCOL_00001807 Prasinoderma coloniale HOM05D005492 ORTHO05D006911 5.1e-72 274.6 165 70.9
Cfa015905 Carpinus fangiana HOM05D005492 ORTHO05D000088 2.6e-71 272.3 167 79.0
DCAR_009548 Daucus carota HOM05D005492 ORTHO05D006911 2.8e-70 268.9 132 91.7
TAR381G1662 Trochodendron aralioides HOM05D005492 ORTHO05D006911 1.8e-69 266.2 131 90.1
Cre02.g142350 Chlamydomonas reinhardtii HOM05D005492 ORTHO05D006911 1.9e-66 256.1 164 67.7
Atru.chr13.934 Acer truncatum HOM05D005492 ORTHO05D006911 2.6e-63 245.7 125 89.6
MELO3C003490.2 Cucumis melo HOM05D005492 ORTHO05D006911 3.8e-59 231.9 124 84.7
FvH4_5g33720 Fragaria vesca HOM05D005492 ORTHO05D006911 4.2e-58 228.4 112 92.0
Duzib093G0511 Durio zibethinus HOM05D005492 ORTHO05D006911 1.8e-56 223.0 119 84.9
Haze_27628 Corylus avellana HOM05D005492 ORTHO05D006911 7.5e-55 217.6 171 57.3
THA.LOC104807850 Tarenaya hassleriana HOM05D005492 ORTHO05D006911 7.5e-55 217.6 125 80.0
MBI16_g14677_MAGBIO Magnolia biondii HOM05D005492 ORTHO05D006911 3.1e-53 212.2 114 86.0
AagrBONN_evm.TU.Sc2ySwM_369.477 Anthoceros agrestis HOM05D005492 ORTHO05D006911 3.6e-49 198.7 112 75.0
Prupe.7G085600 Prunus persica HOM05D005492 ORTHO05D006911 8.0e-49 197.6 104 85.6
Nn2g14030 Nelumbo nucifera HOM05D005492 ORTHO05D006911 1.2e-44 183.7 142 65.5
CSS0004398 Camellia sinensis var. sinensis HOM05D005492 ORTHO05D006911 2.5e-42 176.0 91 87.9
MD08G1145300 Malus domestica HOM05D005492 ORTHO05D006911 4.9e-38 161.8 88 84.1
Dinv07042 Davidia involucrata HOM05D005492 ORTHO05D185078 6.6e-35 151.4 177 50.3
MD16G1251000 Malus domestica HOM05D005492 ORTHO05D245813 8.0e-33 144.4 113 62.8
MD05G1007500 Malus domestica HOM05D005492 ORTHO05D006911 1.1e-29 134.0 114 59.6
Nn5g29750 Nelumbo nucifera HOM05D005492 ORTHO05D006911 1.6e-28 130.2 66 87.9
MD00G1203800 Malus domestica HOM05D005492 ORTHO05D247194 2.0e-23 113.2 96 56.2


User provided reference genes

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