Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g016640 Pisum sativum HOM05D000567 ORTHO05D036838 5.4e-99 364.8 251 100.0
TPR.G1044 Trifolium pratense HOM05D000567 ORTHO05D000767 8.2e-63 244.6 247 73.3
Psat2g136720 Pisum sativum HOM05D000567 ORTHO05D000767 3.8e-60 235.7 182 91.2
Medtr5g030430 Medicago truncatula HOM05D000567 ORTHO05D000767 1.0e-52 211.1 267 62.2
Ca_06081_v3 Cicer arietinum L. HOM05D000567 ORTHO05D000767 1.6e-37 160.6 199 55.8
Glyma.01G018400 Glycine max HOM05D000567 ORTHO05D000767 5.0e-36 155.6 253 45.5
Glyma.09G204500 Glycine max HOM05D000567 ORTHO05D000767 3.4e-32 142.9 257 43.6
Phvul.002G141500 Phaseolus vulgaris HOM05D000567 ORTHO05D000767 5.0e-28 129.0 256 43.4
VMungo1215G2379 Vigna mungo HOM05D000567 ORTHO05D000767 5.5e-27 125.6 258 42.6
Lalb_Chr09g0325651 Lupinus albus HOM05D000567 ORTHO05D000767 1.8e-25 120.6 226 42.0
Lj2g0027797 Lotus japonicus HOM05D000567 ORTHO05D000767 2.6e-24 116.7 253 40.3
Lalb_Chr05g0216071 Lupinus albus HOM05D000567 ORTHO05D000767 6.3e-23 112.1 199 44.7
Ca_22640_v3 Cicer arietinum L. HOM05D000567 ORTHO05D000767 2.9e-20 103.2 255 38.0
Glyma.01G096600 Glycine max HOM05D000567 ORTHO05D000767 6.1e-18 95.5 243 39.1
Cfa003007 Carpinus fangiana HOM05D000567 ORTHO05D000767 1.4e-17 94.4 253 35.6
VMungo0647G0790 Vigna mungo HOM05D000567 ORTHO05D036838 1.8e-17 94.0 202 40.6
Haze_08226 Corylus avellana HOM05D000567 ORTHO05D000767 8.9e-17 91.7 255 34.9
QL12p005169 Quercus lobata HOM05D000567 ORTHO05D000767 4.4e-16 89.4 257 33.5
arahy.Tifrunner.gnm1.ann1.0RH9QK Arachis hypogaea HOM05D000567 ORTHO05D000767 7.5e-16 88.6 205 40.0
arahy.Tifrunner.gnm1.ann1.D615WN Arachis hypogaea HOM05D000567 ORTHO05D000767 7.5e-16 88.6 205 40.0
TWI15G0875 Tripterygium wilfordii HOM05D000567 ORTHO05D000767 1.7e-15 87.4 256 33.2
CANSAT21G0209 Cannabis sativa HOM05D000567 ORTHO05D000767 1.4e-14 84.3 256 41.4
Eucgr.E00277 Eucalyptus grandis HOM05D000567 ORTHO05D000767 1.8e-14 84.0 261 32.6
VMungo0251G0761 Vigna mungo HOM05D000567 ORTHO05D000767 1.8e-14 84.0 189 37.0
CiPaw.11G093600 Carya illinoinensis HOM05D000567 ORTHO05D000767 2.4e-14 83.6 256 32.0
arahy.Tifrunner.gnm1.ann1.6187DS Arachis hypogaea HOM05D000567 ORTHO05D000767 5.4e-14 82.4 252 35.3
arahy.Tifrunner.gnm1.ann1.96VLZ9 Arachis hypogaea HOM05D000567 ORTHO05D000767 5.4e-14 82.4 252 35.3
Phvul.003G285700 Phaseolus vulgaris HOM05D000567 ORTHO05D000767 5.4e-14 82.4 192 39.1
Medtr8g067280 Medicago truncatula HOM05D000567 ORTHO05D000767 7.0e-14 82.0 246 35.8
Dinv25216 Davidia involucrata HOM05D000567 ORTHO05D000767 9.2e-14 81.6 252 34.1
PGR042G0932 Punica granatum HOM05D000567 ORTHO05D000767 9.2e-14 81.6 253 32.0
Aqoxy3G02345 Aquilegia oxysepala HOM05D000567 ORTHO05D000767 1.2e-13 81.3 261 33.0
CiPaw.12G064000 Carya illinoinensis HOM05D000567 ORTHO05D000767 2.0e-13 80.5 212 34.4
Duzib205G1461 Durio zibethinus HOM05D000567 ORTHO05D000767 2.0e-13 80.5 259 33.6
Prupe.5G035400 Prunus persica HOM05D000567 ORTHO05D000767 2.0e-13 80.5 210 38.6
TAR374G0488 Trochodendron aralioides HOM05D000567 ORTHO05D000767 3.5e-13 79.7 246 32.9
RcHm_v2.0_Chr7g0209751 Rosa chinensis HOM05D000567 ORTHO05D000767 4.6e-13 79.3 267 32.6
Lj4g0009423 Lotus japonicus HOM05D000567 ORTHO05D000767 5.9e-13 79.0 273 34.1
TWI81G0935 Tripterygium wilfordii HOM05D000567 ORTHO05D000767 1.7e-12 77.4 256 30.9
Cpa.g.sc71.72 Carica papaya HOM05D000567 ORTHO05D000767 2.3e-12 77.0 200 34.5
Glyma.08G271900 Glycine max HOM05D000567 ORTHO05D000767 2.3e-12 77.0 206 36.9
Thecc.03G227500 Theobroma cacao HOM05D000567 ORTHO05D000767 2.3e-12 77.0 255 36.5
Gohir.A09G201500 Gossypium hirsutum HOM05D000567 ORTHO05D000767 1.9e-11 73.9 252 32.9
Actinidia14806 Actinidia chinensis HOM05D000567 ORTHO05D000767 3.3e-11 73.2 261 33.0
Gorai.006G216700 Gossypium raimondii HOM05D000567 ORTHO05D000767 3.3e-11 73.2 252 32.1
PSO782G1392 Papaver somniferum HOM05D000567 ORTHO05D000767 5.6e-11 72.4 209 32.5
Sed0018501 Sechium edule HOM05D000567 ORTHO05D000767 7.3e-11 72.0 268 30.6
EL10Ac5g12117 Beta vulgaris HOM05D000567 ORTHO05D000767 9.5e-11 71.6 189 33.3
Gohir.D09G193200 Gossypium hirsutum HOM05D000567 ORTHO05D000767 9.5e-11 71.6 255 31.8
Hma1.2p1_0303F.1_g119100 Hydrangea macrophylla HOM05D000567 ORTHO05D000767 9.5e-11 71.6 219 35.6
Manes.17G016000 Manihot esculenta HOM05D000567 ORTHO05D000767 9.5e-11 71.6 263 37.3
TWI60G0750 Tripterygium wilfordii HOM05D000567 ORTHO05D000767 9.5e-11 71.6 251 30.7
CsaV3_3G049150 Cucumis sativus L. HOM05D000567 ORTHO05D000767 1.2e-10 71.2 257 30.4
Duzib084G0664 Durio zibethinus HOM05D000567 ORTHO05D000767 1.2e-10 71.2 254 33.1
MBI04_g23599_MAGBIO Magnolia biondii HOM05D000567 ORTHO05D000767 1.2e-10 71.2 257 30.4
PSO063G2343 Papaver somniferum HOM05D000567 ORTHO05D000767 1.2e-10 71.2 212 33.5
Psat4g117960 Pisum sativum HOM05D000567 ORTHO05D000767 2.8e-10 70.1 255 32.9
MELO3C003412.2 Cucumis melo HOM05D000567 ORTHO05D000767 4.7e-10 69.3 266 31.2
Nitab4.5_0001765g0050 Nicotiana tabacum HOM05D000567 ORTHO05D000767 4.7e-10 69.3 250 30.8
Gohir.A08G156400 Gossypium hirsutum HOM05D000567 ORTHO05D000767 6.2e-10 68.9 255 34.5
Atru.chr6.1707 Acer truncatum HOM05D000567 ORTHO05D000767 8.0e-10 68.6 197 43.1
Rhsim07G0127300 Rhododendron simsii HOM05D000567 ORTHO05D000767 1.0e-09 68.2 248 35.1
Ciclev10011214m.g Citrus clementina HOM05D000567 ORTHO05D000767 3.1e-09 66.6 246 33.7
Nitab4.5_0001012g0020 Nicotiana tabacum HOM05D000567 ORTHO05D000767 3.1e-09 66.6 250 30.4
Peaxi162Scf00460g00011 Petunia axillaris HOM05D000567 ORTHO05D000767 6.8e-09 65.5 266 30.1
FAN04G1775 Fragaria x ananassa HOM05D000567 ORTHO05D000767 8.9e-09 65.1 261 31.8
FAN18G1563 Fragaria x ananassa HOM05D000567 ORTHO05D000767 8.9e-09 65.1 264 32.2
Lalb_Chr05g0224061 Lupinus albus HOM05D000567 ORTHO05D000767 1.2e-08 64.7 252 32.1
FvH4_5g22100 Fragaria vesca HOM05D000567 ORTHO05D000767 1.5e-08 64.3 264 32.2
FAN13G0531 Fragaria x ananassa HOM05D000567 ORTHO05D000767 2.0e-08 63.9 264 32.2
Gohir.D08G176900 Gossypium hirsutum HOM05D000567 ORTHO05D000767 2.0e-08 63.9 254 35.0
Gorai.004G184800 Gossypium raimondii HOM05D000567 ORTHO05D000767 2.0e-08 63.9 254 35.0
TAR636G0516 Trochodendron aralioides HOM05D000567 ORTHO05D000767 2.0e-08 63.9 160 35.0
CSS0029111 Camellia sinensis var. sinensis HOM05D000567 ORTHO05D000767 5.8e-08 62.4 260 30.0
CSS0047466 Camellia sinensis var. sinensis HOM05D000567 ORTHO05D000767 5.8e-08 62.4 260 30.0
Manes.15G182700 Manihot esculenta HOM05D000567 ORTHO05D000767 7.5e-08 62.0 266 30.1
PGSC0003DMG400017535 Solanum tuberosum HOM05D000567 ORTHO05D000767 1.7e-07 60.8 255 29.4
CAN.G298.8 Capsicum annuum HOM05D000567 ORTHO05D000767 1.9e-06 57.4 247 28.7
MELO3C013851.2 Cucumis melo HOM05D000567 ORTHO05D000767 1.9e-06 57.4 259 29.0
Ah.07g200390 Amaranthus hybridus HOM05D000567 ORTHO05D000767 2.4e-06 57.0 111 38.7
Hma1.2p1_2704F.1_g327120 Hydrangea macrophylla HOM05D000567 ORTHO05D000767 3.2e-06 56.6 150 36.7
Lj2P239T15 Lonicera japonica HOM05D000567 ORTHO05D000767 3.2e-06 56.6 221 27.6
Nn6g34478 Nelumbo nucifera HOM05D000567 ORTHO05D036838 4.1e-06 56.2 163 31.9
AUR62007294 Chenopodium quinoa HOM05D000567 ORTHO05D000767 5.4e-06 55.8 193 31.6
CsaV3_3G001710 Cucumis sativus L. HOM05D000567 ORTHO05D000767 5.4e-06 55.8 259 28.6
Dinv28959 Davidia involucrata HOM05D000567 ORTHO05D000767 7.0e-06 55.5 145 43.4


User provided reference genes

Program Settings