Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g014400 Pisum sativum HOM05D005344 ORTHO05D006444 2.2e-67 258.8 129 100.0
Medtr3g113260 Medicago truncatula HOM05D005344 ORTHO05D006444 7.7e-65 250.4 129 96.1
Medtr1g013440 Medicago truncatula HOM05D005344 ORTHO05D006444 5.0e-64 247.7 129 95.3
TPR.G38895 Trifolium pratense HOM05D005344 ORTHO05D006444 5.0e-64 247.7 129 96.1
TPR.G5807 Trifolium pratense HOM05D005344 ORTHO05D006444 5.0e-64 247.7 130 96.2
Ca_16814_v3 Cicer arietinum L. HOM05D005344 ORTHO05D006444 1.3e-59 233.0 119 95.8
Lj1g0020845 Lotus japonicus HOM05D005344 ORTHO05D006444 1.7e-59 232.6 129 89.1
CiPaw.08G064300 Carya illinoinensis HOM05D005344 ORTHO05D006444 2.2e-56 222.2 129 84.5
Lalb_Chr11g0061991 Lupinus albus HOM05D005344 ORTHO05D006444 1.4e-55 219.5 129 86.8
arahy.Tifrunner.gnm1.ann1.Y8FRL8 Arachis hypogaea HOM05D005344 ORTHO05D006444 1.9e-55 219.2 129 85.3
PGR083G0019 Punica granatum HOM05D005344 ORTHO05D006444 1.9e-55 219.2 129 84.5
Gohir.D05G218100 Gossypium hirsutum HOM05D005344 ORTHO05D006444 2.5e-55 218.8 129 84.5
Nn6g32300 Nelumbo nucifera HOM05D005344 ORTHO05D006444 2.5e-55 218.8 129 84.5
PGR102G3231 Punica granatum HOM05D005344 ORTHO05D006444 3.2e-55 218.4 127 85.0
Gohir.A05G214800 Gossypium hirsutum HOM05D005344 ORTHO05D006444 5.5e-55 217.6 129 83.7
QL02p011006 Quercus lobata HOM05D005344 ORTHO05D006444 5.5e-55 217.6 128 82.8
Glyma.06G025600 Glycine max HOM05D005344 ORTHO05D006444 9.4e-55 216.9 129 86.0
Phvul.009G015400 Phaseolus vulgaris HOM05D005344 ORTHO05D006444 9.4e-55 216.9 129 86.8
QL03p018250 Quercus lobata HOM05D005344 ORTHO05D006444 9.4e-55 216.9 128 82.0
Duzib093G0333 Durio zibethinus HOM05D005344 ORTHO05D006444 1.2e-54 216.5 129 82.9
Potri.004G228566 Populus trichocarpa HOM05D005344 ORTHO05D006444 1.6e-54 216.1 129 84.5
GSVIVG01009861001 Vitis vinifera HOM05D005344 ORTHO05D006444 2.1e-54 215.7 129 82.9
TWI75G1031 Tripterygium wilfordii HOM05D005344 ORTHO05D006444 4.7e-54 214.5 129 82.9
Cpa.g.sc116.53 Carica papaya HOM05D005344 ORTHO05D006444 7.9e-54 213.8 127 82.7
Thecc.08G040900 Theobroma cacao HOM05D005344 ORTHO05D006444 7.9e-54 213.8 129 82.2
Atru.chr12.1135 Acer truncatum HOM05D005344 ORTHO05D006444 1.0e-53 213.4 127 81.1
CANSAT56G2098 Cannabis sativa HOM05D005344 ORTHO05D006444 1.8e-53 212.6 129 80.6
TWI31G0971 Tripterygium wilfordii HOM05D005344 ORTHO05D006444 1.8e-53 212.6 129 81.4
CSS0034614 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 2.3e-53 212.2 129 81.4
Cc10_g01930 Coffea canephora HOM05D005344 ORTHO05D006444 2.3e-53 212.2 129 80.6
TAR381G0484 Trochodendron aralioides HOM05D005344 ORTHO05D006444 2.3e-53 212.2 129 79.8
Actinidia15404 Actinidia chinensis HOM05D005344 ORTHO05D006444 3.0e-53 211.8 123 80.5
CANSAT56G2754 Cannabis sativa HOM05D005344 ORTHO05D006444 6.7e-53 210.7 129 79.8
Cfa013923 Carpinus fangiana HOM05D005344 ORTHO05D006444 6.7e-53 210.7 128 81.2
Dinv39499 Davidia involucrata HOM05D005344 ORTHO05D006444 6.7e-53 210.7 129 82.2
FAN15G2308 Fragaria x ananassa HOM05D005344 ORTHO05D006444 1.5e-52 209.5 129 80.6
Prupe.1G182400 Prunus persica HOM05D005344 ORTHO05D006444 1.5e-52 209.5 129 80.6
Manes.18G015800 Manihot esculenta HOM05D005344 ORTHO05D006444 2.6e-52 208.8 129 80.6
Nitab4.5_0001988g0010 Nicotiana tabacum HOM05D005344 ORTHO05D006444 2.6e-52 208.8 129 79.1
Prupe.1G368800 Prunus persica HOM05D005344 ORTHO05D006444 2.6e-52 208.8 129 80.6
HanXRQChr15g0480961 Helianthus annuus HOM05D005344 ORTHO05D006444 3.3e-52 208.4 129 81.4
Lsat_1_v5_gn_7_29421 Lactuca sativa HOM05D005344 ORTHO05D006444 3.3e-52 208.4 129 80.6
ECA236G2959 Erigeron canadensis HOM05D005344 ORTHO05D006444 4.4e-52 208.0 129 79.1
Glyma.04G025800 Glycine max HOM05D005344 ORTHO05D006444 4.4e-52 208.0 129 82.9
HanXRQChr04g0119171 Helianthus annuus HOM05D005344 ORTHO05D006444 7.4e-52 207.2 129 80.6
Carub.0007s3634 Capsella rubella HOM05D005344 ORTHO05D006444 9.7e-52 206.8 127 80.3
Solyc04g081220.3 Solanum lycopersicum HOM05D005344 ORTHO05D006444 9.7e-52 206.8 129 78.3
Sopen04g034830 Solanum pennellii HOM05D005344 ORTHO05D006444 9.7e-52 206.8 129 78.3
AT5G39600 Arabidopsis thaliana HOM05D005344 ORTHO05D006444 1.3e-51 206.5 127 80.3
RcHm_v2.0_Chr6g0302491 Rosa chinensis HOM05D005344 ORTHO05D006444 1.3e-51 206.5 129 79.1
PGSC0003DMG400003723 Solanum tuberosum HOM05D005344 ORTHO05D006444 1.7e-51 206.1 129 78.3
MD02G1241500 Malus domestica HOM05D005344 ORTHO05D006444 2.2e-51 205.7 129 78.3
Nitab4.5_0006992g0020 Nicotiana tabacum HOM05D005344 ORTHO05D006444 2.2e-51 205.7 129 78.3
Aa31LG9G16480 Aethionema arabicum HOM05D005344 ORTHO05D006444 2.8e-51 205.3 127 78.0
BcaB06g27347 Brassica carinata HOM05D005344 ORTHO05D006444 3.7e-51 204.9 129 78.3
BolC4t26183H Brassica oleracea HOM05D005344 ORTHO05D006444 3.7e-51 204.9 129 78.3
BraA04t16898Z Brassica rapa HOM05D005344 ORTHO05D006444 3.7e-51 204.9 129 78.3
MD07G1075400 Malus domestica HOM05D005344 ORTHO05D006444 3.7e-51 204.9 129 78.3
FvH4_2g38800 Fragaria vesca HOM05D005344 ORTHO05D006444 6.3e-51 204.1 129 78.3
SGA_v2.0_scaffold47G17494 Striga asiatica HOM05D005344 ORTHO05D006444 6.3e-51 204.1 129 77.5
Sabra01G0173600 Salix brachista HOM05D005344 ORTHO05D006444 1.4e-50 203.0 120 83.3
Sp7g02390 Schrenkiella parvula HOM05D005344 ORTHO05D006444 1.4e-50 203.0 127 77.2
Eucgr.F01631 Eucalyptus grandis HOM05D005344 ORTHO05D006444 1.8e-50 202.6 124 80.6
Gorai.009G225000 Gossypium raimondii HOM05D005344 ORTHO05D006444 1.8e-50 202.6 119 83.2
Sed0018322 Sechium edule HOM05D005344 ORTHO05D006444 1.8e-50 202.6 127 78.0
Migut.N03145 Erythranthe guttata HOM05D005344 ORTHO05D006444 2.4e-50 202.2 129 76.0
VMungo1309G2030 Vigna mungo HOM05D005344 ORTHO05D006444 3.1e-50 201.8 122 84.4
CSS0046173 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 4.1e-50 201.4 119 82.4
arahy.Tifrunner.gnm1.ann1.0YI8WX Arachis hypogaea HOM05D005344 ORTHO05D006444 5.3e-50 201.1 119 83.2
CSS0046670 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 5.3e-50 201.1 121 80.2
Potri.012G106900 Populus trichocarpa HOM05D005344 ORTHO05D006444 5.3e-50 201.1 119 84.0
AL7G50710 Arabidopsis lyrata HOM05D005344 ORTHO05D006444 7.0e-50 200.7 127 78.0
Haze_22604 Corylus avellana HOM05D005344 ORTHO05D006444 7.0e-50 200.7 119 83.2
Thhalv10027992m.g Eutrema salsugineum HOM05D005344 ORTHO05D006444 7.0e-50 200.7 127 77.2
CsaV3_3G045650 Cucumis sativus L. HOM05D005344 ORTHO05D006444 9.1e-50 200.3 127 78.7
Peaxi162Scf00287g01714 Petunia axillaris HOM05D005344 ORTHO05D006444 9.1e-50 200.3 129 76.0
CARHR262690 Cardamine hirsuta HOM05D005344 ORTHO05D006444 1.6e-49 199.5 127 78.0
Sc02g0008440 Simmondsia chinensis HOM05D005344 ORTHO05D006444 1.6e-49 199.5 129 73.6
arahy.Tifrunner.gnm1.ann1.2J2T1L Arachis hypogaea HOM05D005344 ORTHO05D006444 2.6e-49 198.7 122 81.1
MSTRG.24255 Avicennia marina HOM05D005344 ORTHO05D006444 2.6e-49 198.7 129 76.0
Rhsim07G0245900 Rhododendron simsii HOM05D005344 ORTHO05D006444 3.5e-49 198.4 119 78.2
vmacro04337 Vaccinium macrocarpon HOM05D005344 ORTHO05D006444 5.9e-49 197.6 119 79.0
DCAR_013854 Daucus carota HOM05D005344 ORTHO05D006444 1.3e-48 196.4 119 78.2
PSO541G4852 Papaver somniferum HOM05D005344 ORTHO05D006444 1.7e-48 196.1 129 74.4
PSO675G5369 Papaver somniferum HOM05D005344 ORTHO05D006444 1.7e-48 196.1 129 74.4
COL.COLO4_32025 Corchorus olitorius HOM05D005344 ORTHO05D006444 2.9e-48 195.3 119 79.8
arahy.Tifrunner.gnm1.ann1.NGB00B Arachis hypogaea HOM05D005344 ORTHO05D006444 1.1e-47 193.4 119 81.5
CDE05G1229 Ceratophyllum demersum HOM05D005344 ORTHO05D006444 1.9e-47 192.6 129 72.9
ClCG05G018520 Citrullus lanatus HOM05D005344 ORTHO05D006444 1.9e-47 192.6 119 79.8
FAN20G2570 Fragaria x ananassa HOM05D005344 ORTHO05D006444 1.9e-47 192.6 119 78.2
TAR625G0974 Trochodendron aralioides HOM05D005344 ORTHO05D006444 4.2e-47 191.4 129 70.5
A04p12340 Brassica napus HOM05D005344 ORTHO05D006444 5.5e-47 191.0 121 76.9
C04p46010 Brassica napus HOM05D005344 ORTHO05D006444 5.5e-47 191.0 121 76.9
Nitab4.5_0005425g0020 Nicotiana tabacum HOM05D005344 ORTHO05D006444 9.4e-47 190.3 119 76.5
CAN.G1271.12 Capsicum annuum HOM05D005344 ORTHO05D006444 1.2e-46 189.9 119 76.5
Oeu031192.1 Olea europaea HOM05D005344 ORTHO05D006444 1.2e-46 189.9 119 76.5
SalBow8G2912 Salvia bowleyana HOM05D005344 ORTHO05D006444 1.6e-46 189.5 119 76.5
Ciclev10002838m.g Citrus clementina HOM05D005344 ORTHO05D006444 2.7e-46 188.7 127 72.4
Oeu024518.1 Olea europaea HOM05D005344 ORTHO05D006444 6.1e-46 187.6 119 75.6
CDE05G1331 Ceratophyllum demersum HOM05D005344 ORTHO05D006444 2.6e-44 182.2 119 73.1
Aqoxy6G02319 Aquilegia oxysepala HOM05D005344 ORTHO05D006444 3.3e-44 181.8 129 69.0
Aqoxy6G02944 Aquilegia oxysepala HOM05D005344 ORTHO05D006444 3.3e-44 181.8 119 73.1
unitig_899.g15276 Utricularia gibba HOM05D005344 ORTHO05D006444 7.5e-44 180.6 148 64.2
HPP92_014936 Vanilla planifolia HOM05D005344 ORTHO05D006444 7.5e-44 180.6 128 71.9
MELO3C003771.2 Cucumis melo HOM05D005344 ORTHO05D006444 2.8e-43 178.7 113 77.9
FvH4_1g25620 Fragaria vesca HOM05D005344 ORTHO05D006444 3.7e-43 178.3 127 70.1
arahy.Tifrunner.gnm1.ann1.3U1GZ3 Arachis hypogaea HOM05D005344 ORTHO05D006444 1.1e-42 176.8 107 83.2
EL10Ac1g02258 Beta vulgaris HOM05D005344 ORTHO05D006444 1.8e-42 176.0 128 64.8
arahy.Tifrunner.gnm1.ann1.IGJ8TG Arachis hypogaea HOM05D005344 ORTHO05D006444 7.0e-42 174.1 105 83.8
AUR62035723 Chenopodium quinoa HOM05D005344 ORTHO05D006444 9.1e-42 173.7 146 60.3
TAR625G1223 Trochodendron aralioides HOM05D005344 ORTHO05D006444 9.1e-42 173.7 117 69.2
AUR62035436 Chenopodium quinoa HOM05D005344 ORTHO05D006444 1.7e-40 169.5 119 66.4
FAN23G0736 Fragaria x ananassa HOM05D005344 ORTHO05D006444 1.7e-40 169.5 130 67.7
SHI08085 Sapria himalayana HOM05D005344 ORTHO05D006444 3.8e-40 168.3 119 68.9
FAN26G0652 Fragaria x ananassa HOM05D005344 ORTHO05D006444 6.5e-40 167.5 122 67.2
MBI05_g26505_MAGBIO Magnolia biondii HOM05D005344 ORTHO05D006444 8.5e-40 167.2 107 76.6
Atru.chr4.1572 Acer truncatum HOM05D005344 ORTHO05D006444 3.2e-39 165.2 133 66.2
FAN19G0275 Fragaria x ananassa HOM05D005344 ORTHO05D006444 5.5e-39 164.5 121 67.8
ATR0665G498 Amborella trichopoda HOM05D005344 ORTHO05D006444 1.4e-37 159.8 129 64.3
Manes.09G054100 Manihot esculenta HOM05D005344 ORTHO05D006444 1.4e-37 159.8 119 64.7
arahy.Tifrunner.gnm1.ann1.Y1NSFR Arachis hypogaea HOM05D005344 ORTHO05D006444 5.2e-37 157.9 96 83.3
arahy.Tifrunner.gnm1.ann1.2QY3VR Arachis hypogaea HOM05D005344 ORTHO05D006444 1.5e-36 156.4 109 76.1
arahy.Tifrunner.gnm1.ann1.ZTTZ43 Arachis hypogaea HOM05D005344 ORTHO05D006444 2.6e-36 155.6 96 82.3
arahy.Tifrunner.gnm1.ann1.H9RICG Arachis hypogaea HOM05D005344 ORTHO05D006444 4.4e-36 154.8 95 82.1
Os02g0282100 Oryza sativa ssp. japonica HOM05D005344 ORTHO05D006444 5.9e-33 144.4 143 52.4
MSTRG.22330 Avicennia marina HOM05D005344 ORTHO05D006444 2.3e-32 142.5 97 69.1
Pp3c9_11020 Physcomitrium patens HOM05D005344 ORTHO05D006444 8.6e-32 140.6 129 56.6
Gorai.005G111500 Gossypium raimondii HOM05D005344 ORTHO05D006444 2.8e-30 135.6 100 68.0
Mapoly0151s0020 Marchantia polymorpha HOM05D005344 ORTHO05D006444 3.6e-30 135.2 113 54.9
Zm00001eb237200 Zea mays HOM05D005344 ORTHO05D006444 1.5e-28 129.8 141 48.2
AagrBONN_evm.TU.Sc2ySwM_117.1156 Anthoceros agrestis HOM05D005344 ORTHO05D006444 4.4e-28 128.3 119 53.8
MBI07_g11722_MAGBIO Magnolia biondii HOM05D005344 ORTHO05D006444 4.4e-28 128.3 85 75.3
ATR0605G109 Amborella trichopoda HOM05D005344 ORTHO05D006444 3.5e-25 118.6 92 65.2
Hund00462 Selenicereus undatus HOM05D005344 ORTHO05D006444 1.7e-24 116.3 113 49.6
arahy.Tifrunner.gnm1.ann1.3DP3ZG Arachis hypogaea HOM05D005344 ORTHO05D006444 1.5e-15 86.7 46 87.0
CSS0040415 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 5.4e-10 68.2 39 76.9
CSS0035037 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 1.1e-07 60.5 39 74.4


User provided reference genes

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