Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g013440 Pisum sativum HOM05D005146 ORTHO05D006752 8.2e-157 557.0 275 100.0
Medtr3g113750 Medicago truncatula HOM05D005146 ORTHO05D006752 2.0e-147 525.8 273 93.4
TPR.G34539 Trifolium pratense HOM05D005146 ORTHO05D006752 1.9e-145 519.2 275 92.0
Glyma.07G217500 Glycine max HOM05D005146 ORTHO05D006752 7.9e-144 513.8 275 89.5
VMungo0251G0853 Vigna mungo HOM05D005146 ORTHO05D006752 3.9e-143 511.5 275 89.8
Phvul.001G002400 Phaseolus vulgaris HOM05D005146 ORTHO05D006752 4.3e-142 508.1 275 89.5
Ca_14210_v3 Cicer arietinum L. HOM05D005146 ORTHO05D006752 9.7e-142 506.9 275 89.5
Glyma.20G014100 Glycine max HOM05D005146 ORTHO05D006752 1.7e-141 506.1 274 88.0
Lalb_Chr23g0266181 Lupinus albus HOM05D005146 ORTHO05D006752 5.5e-137 491.1 275 87.3
Lj1g0002754 Lotus japonicus HOM05D005146 ORTHO05D006752 7.2e-137 490.7 275 86.2
CANSAT11G0704 Cannabis sativa HOM05D005146 ORTHO05D006752 5.1e-135 484.6 271 85.2
Lj5g0000481 Lotus japonicus HOM05D005146 ORTHO05D006752 7.4e-134 480.7 275 84.4
arahy.Tifrunner.gnm1.ann1.DQ6KFY Arachis hypogaea HOM05D005146 ORTHO05D006752 9.7e-134 480.3 275 82.5
arahy.Tifrunner.gnm1.ann1.VN499F Arachis hypogaea HOM05D005146 ORTHO05D006752 2.8e-133 478.8 275 82.5
arahy.Tifrunner.gnm1.ann1.RM6BI2 Arachis hypogaea HOM05D005146 ORTHO05D006752 8.2e-133 477.2 275 81.8
GSVIVG01009887001 Vitis vinifera HOM05D005146 ORTHO05D006752 1.5e-131 473.0 273 82.1
QL02p011373 Quercus lobata HOM05D005146 ORTHO05D006752 2.6e-131 472.2 273 82.1
THA.LOC104825772 Tarenaya hassleriana HOM05D005146 ORTHO05D006752 3.5e-131 471.9 271 82.7
Nitab4.5_0001540g0020 Nicotiana tabacum HOM05D005146 ORTHO05D006752 1.7e-130 469.5 270 83.0
DCAR_009928 Daucus carota HOM05D005146 ORTHO05D006752 2.9e-130 468.8 270 81.9
Manes.05G148600 Manihot esculenta HOM05D005146 ORTHO05D006752 3.8e-130 468.4 271 82.7
RcHm_v2.0_Chr6g0302671 Rosa chinensis HOM05D005146 ORTHO05D006752 8.5e-130 467.2 271 81.2
PSO700G0287 Papaver somniferum HOM05D005146 ORTHO05D006752 1.1e-129 466.8 270 81.1
Prupe.1G367100 Prunus persica HOM05D005146 ORTHO05D006752 1.1e-129 466.8 273 80.6
Atru.chr13.312 Acer truncatum HOM05D005146 ORTHO05D006752 1.5e-129 466.5 271 80.8
Thecc.09G245400 Theobroma cacao HOM05D005146 ORTHO05D006752 1.5e-129 466.5 274 79.9
CiPaw.07G151400 Carya illinoinensis HOM05D005146 ORTHO05D006752 1.9e-129 466.1 273 80.2
Ciclev10002090m.g Citrus clementina HOM05D005146 ORTHO05D006752 1.9e-129 466.1 271 81.5
Eucgr.F01641 Eucalyptus grandis HOM05D005146 ORTHO05D006752 2.5e-129 465.7 271 80.4
Manes.11G065850 Manihot esculenta HOM05D005146 ORTHO05D006752 2.5e-129 465.7 271 81.5
CAN.G311.14 Capsicum annuum HOM05D005146 ORTHO05D006752 4.2e-129 464.9 270 81.5
Potri.002G023700 Populus trichocarpa HOM05D005146 ORTHO05D006752 4.2e-129 464.9 273 80.2
Solyc04g081310.3 Solanum lycopersicum HOM05D005146 ORTHO05D006752 5.5e-129 464.5 270 80.7
Sopen04g034930 Solanum pennellii HOM05D005146 ORTHO05D006752 5.5e-129 464.5 270 80.7
PGSC0003DMG400003775 Solanum tuberosum HOM05D005146 ORTHO05D006752 5.5e-129 464.5 270 80.7
MD15G1013600 Malus domestica HOM05D005146 ORTHO05D006752 7.2e-129 464.2 271 80.8
Gohir.A08G010500 Gossypium hirsutum HOM05D005146 ORTHO05D006752 9.4e-129 463.8 274 80.3
PSO170G4907 Papaver somniferum HOM05D005146 ORTHO05D006752 9.4e-129 463.8 269 81.0
Cpa.g.sc1059.3 Carica papaya HOM05D005146 ORTHO05D006752 1.2e-128 463.4 273 80.2
Aa31LG2G18510 Aethionema arabicum HOM05D005146 ORTHO05D006752 1.6e-128 463.0 275 80.7
Migut.N03153 Erythranthe guttata HOM05D005146 ORTHO05D006752 1.6e-128 463.0 271 80.4
TWI56G0936 Tripterygium wilfordii HOM05D005146 ORTHO05D006752 1.6e-128 463.0 271 80.1
Haze_04102 Corylus avellana HOM05D005146 ORTHO05D006752 2.7e-128 462.2 273 80.6
PGR083G0855 Punica granatum HOM05D005146 ORTHO05D006752 2.7e-128 462.2 273 80.2
FAN27G1976 Fragaria x ananassa HOM05D005146 ORTHO05D006752 3.6e-128 461.8 271 80.4
Gohir.D08G020900 Gossypium hirsutum HOM05D005146 ORTHO05D006752 4.7e-128 461.5 274 80.3
FvH4_2g38650 Fragaria vesca HOM05D005146 ORTHO05D006752 1.0e-127 460.3 271 80.1
FAN15G2679 Fragaria x ananassa HOM05D005146 ORTHO05D006752 1.4e-127 459.9 271 80.1
arahy.Tifrunner.gnm1.ann1.NX94TN Arachis hypogaea HOM05D005146 ORTHO05D006752 1.8e-127 459.5 305 73.4
Carub.0007s0877 Capsella rubella HOM05D005146 ORTHO05D006752 1.8e-127 459.5 272 80.5
Dinv31832 Davidia involucrata HOM05D005146 ORTHO05D006752 1.8e-127 459.5 270 80.0
Sabra02G0019300 Salix brachista HOM05D005146 ORTHO05D006752 1.8e-127 459.5 273 79.5
Cfa006669 Carpinus fangiana HOM05D005146 ORTHO05D006752 3.0e-127 458.8 273 79.9
CARHR239690 Cardamine hirsuta HOM05D005146 ORTHO05D006752 3.9e-127 458.4 272 80.5
Actinidia15413 Actinidia chinensis HOM05D005146 ORTHO05D006752 5.2e-127 458.0 270 80.7
FAN20G2808 Fragaria x ananassa HOM05D005146 ORTHO05D006752 5.2e-127 458.0 271 80.1
MD08G1014100 Malus domestica HOM05D005146 ORTHO05D006752 6.7e-127 457.6 271 79.0
AT4G31790 Arabidopsis thaliana HOM05D005146 ORTHO05D006752 1.1e-126 456.8 275 79.3
Sp7g29580 Schrenkiella parvula HOM05D005146 ORTHO05D006752 1.5e-126 456.4 275 79.3
Nn6g32362 Nelumbo nucifera HOM05D005146 ORTHO05D006752 2.0e-126 456.1 270 78.9
Rhsim06G0022400 Rhododendron simsii HOM05D005146 ORTHO05D006752 2.0e-126 456.1 270 80.7
SGA_v2.0_scaffold12G05971 Striga asiatica HOM05D005146 ORTHO05D006752 2.6e-126 455.7 271 79.7
AL7G20220 Arabidopsis lyrata HOM05D005146 ORTHO05D006752 7.4e-126 454.1 275 78.9
Thhalv10025950m.g Eutrema salsugineum HOM05D005146 ORTHO05D006752 9.7e-126 453.8 272 80.1
ECA238G2776 Erigeron canadensis HOM05D005146 ORTHO05D006752 1.7e-125 453.0 271 78.2
BcaC09g51970 Brassica carinata HOM05D005146 ORTHO05D006752 2.2e-125 452.6 275 77.8
C01p07160 Brassica napus HOM05D005146 ORTHO05D006752 3.7e-125 451.8 275 77.8
BolC1t00708H Brassica oleracea HOM05D005146 ORTHO05D006752 3.7e-125 451.8 275 77.8
Aqoxy5G01768 Aquilegia oxysepala HOM05D005146 ORTHO05D006752 8.2e-125 450.7 270 80.0
BcaNung05185 Brassica carinata HOM05D005146 ORTHO05D006752 8.2e-125 450.7 272 78.3
CsaV3_2G029420 Cucumis sativus L. HOM05D005146 ORTHO05D006752 1.4e-124 449.9 271 79.0
Cc10_g01800 Coffea canephora HOM05D005146 ORTHO05D006752 2.4e-124 449.1 271 78.2
BraA01t00610Z Brassica rapa HOM05D005146 ORTHO05D006752 3.1e-124 448.7 272 77.9
Sed0001191 Sechium edule HOM05D005146 ORTHO05D006752 3.1e-124 448.7 271 79.0
Oeu020876.1 Olea europaea HOM05D005146 ORTHO05D006752 4.1e-124 448.4 262 82.1
A01p06490 Brassica napus HOM05D005146 ORTHO05D006752 7.0e-124 447.6 275 77.1
CSS0007392 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 5.9e-123 444.5 270 78.5
CSS0032974 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 5.9e-123 444.5 270 78.5
ATR0797G002 Amborella trichopoda HOM05D005146 ORTHO05D006752 7.7e-123 444.1 273 76.6
Lsat_1_v5_gn_2_8601 Lactuca sativa HOM05D005146 ORTHO05D006752 7.7e-123 444.1 271 76.4
HanXRQChr06g0183611 Helianthus annuus HOM05D005146 ORTHO05D006752 2.9e-122 442.2 271 76.4
COL.COLO4_37538 Corchorus olitorius HOM05D005146 ORTHO05D006752 5.0e-122 441.4 257 81.7
Hund05199 Selenicereus undatus HOM05D005146 ORTHO05D006752 3.2e-121 438.7 270 75.2
Ah.08g209140 Amaranthus hybridus HOM05D005146 ORTHO05D006752 4.2e-121 438.3 302 71.2
EL10Ac6g13895 Beta vulgaris HOM05D005146 ORTHO05D006752 4.2e-121 438.3 304 70.7
AUR62019460 Chenopodium quinoa HOM05D005146 ORTHO05D006752 8.0e-120 434.1 270 77.0
HPP92_027733 Vanilla planifolia HOM05D005146 ORTHO05D006752 5.2e-119 431.4 273 73.6
Os03g0355800 Oryza sativa ssp. japonica HOM05D005146 ORTHO05D006752 1.5e-118 429.9 275 72.0
unitig_746.g26814 Utricularia gibba HOM05D005146 ORTHO05D006752 3.4e-118 428.7 270 74.4
Aqoxy6G00492 Aquilegia oxysepala HOM05D005146 ORTHO05D006752 2.2e-117 426.0 261 77.4
Duzib150G0501 Durio zibethinus HOM05D005146 ORTHO05D006752 3.7e-117 425.2 271 75.6
Zm00001eb017150 Zea mays HOM05D005146 ORTHO05D006752 5.4e-116 421.4 270 72.2
Mapoly0107s0028 Marchantia polymorpha HOM05D005146 ORTHO05D006752 2.7e-115 419.1 271 69.4
ClCG08G014400 Citrullus lanatus HOM05D005146 ORTHO05D006752 5.9e-115 417.9 271 74.5
Gorai.004G015300 Gossypium raimondii HOM05D005146 ORTHO05D006752 1.3e-114 416.8 274 74.1
Peaxi162Scf00438g00626 Petunia axillaris HOM05D005146 ORTHO05D006752 3.2e-113 412.1 270 74.1
AagrBONN_evm.TU.Sc2ySwM_117.1420 Anthoceros agrestis HOM05D005146 ORTHO05D006752 5.5e-113 411.4 271 67.5
SalBow3G2629 Salvia bowleyana HOM05D005146 ORTHO05D006752 1.8e-111 406.4 241 77.6
MELO3C011001.2 Cucumis melo HOM05D005146 ORTHO05D006752 8.8e-111 404.1 283 71.0
Pp3c25_4490 Physcomitrium patens HOM05D005146 ORTHO05D006752 1.5e-110 403.3 271 66.4
MBI09_g15694_MAGBIO Magnolia biondii HOM05D005146 ORTHO05D006752 3.4e-110 402.1 385 55.1
AagrBONN_evm.TU.Sc2ySwM_368.2751 Anthoceros agrestis HOM05D005146 ORTHO05D006752 5.7e-110 401.4 271 66.4
CDE05G1835 Ceratophyllum demersum HOM05D005146 ORTHO05D006752 7.7e-107 391.0 243 76.1
SMO146G0393 Selaginella moellendorffii HOM05D005146 ORTHO05D006752 2.3e-106 389.4 271 64.9
HPP92_026026 Vanilla planifolia HOM05D005146 ORTHO05D006752 7.2e-105 384.4 246 72.8
vmacro21720 Vaccinium macrocarpon HOM05D005146 ORTHO05D006752 2.9e-101 372.5 221 78.7
RcHm_v2.0_Chr7g0221331 Rosa chinensis HOM05D005146 ORTHO05D006752 1.1e-100 370.5 271 68.3
CBR_g41468 Chara braunii HOM05D005146 ORTHO05D006752 2.4e-100 369.4 271 63.8
Hma1.2p1_0638F.1_g193760 Hydrangea macrophylla HOM05D005146 ORTHO05D006752 3.2e-100 369.0 220 79.1
CSS0032399 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 7.3e-97 357.8 251 70.5
Cre05.g233300 Chlamydomonas reinhardtii HOM05D005146 ORTHO05D006752 1.7e-93 346.7 271 60.9
TAR628G0140 Trochodendron aralioides HOM05D005146 ORTHO05D006752 3.7e-93 345.5 197 82.2
Lsat_1_v5_gn_2_8681 Lactuca sativa HOM05D004999 ORTHO05D007513 5.0e-90 335.1 221 71.9
MCO08G273 Micromonas commoda HOM05D005146 ORTHO05D006752 9.5e-89 330.9 273 56.0
C09p44220 Brassica napus HOM05D005146 ORTHO05D006752 1.1e-87 327.4 275 59.6
BolC8t49001H Brassica oleracea HOM05D005146 ORTHO05D006752 4.0e-87 325.5 271 62.0
C08p13630 Brassica napus HOM05D005146 ORTHO05D006752 1.5e-86 323.6 271 61.6
PRCOL_00004436 Prasinoderma coloniale HOM05D005146 ORTHO05D006752 1.1e-84 317.4 288 55.2
Sc26g0004380 Simmondsia chinensis HOM05D005146 ORTHO05D006752 6.2e-80 301.6 178 78.7
BcaC04g20385 Brassica carinata HOM05D005146 ORTHO05D006752 8.1e-80 301.2 276 57.6
Haze_26822 Corylus avellana HOM05D005146 ORTHO05D006752 1.7e-77 293.5 276 51.8
ATR0816G001 Amborella trichopoda HOM05D005146 ORTHO05D006752 7.1e-76 288.1 168 81.5
Oeu039057.1 Olea europaea HOM05D005146 ORTHO05D006752 3.5e-75 285.8 240 61.7
BcaC04g20389 Brassica carinata HOM05D005146 ORTHO05D006752 3.9e-74 282.3 275 53.8
Medtr1g107520 Medicago truncatula HOM05D005146 ORTHO05D006752 3.6e-72 275.8 165 85.5
Lj4A797T61 Lonicera japonica HOM05D005146 ORTHO05D006752 2.6e-70 269.6 152 84.9
MSTRG.25237 Avicennia marina HOM05D005146 ORTHO05D006752 9.3e-68 261.2 152 78.9
AUR62036170 Chenopodium quinoa HOM05D005146 ORTHO05D006752 4.2e-60 235.7 206 60.2
BcaC04g20387 Brassica carinata HOM05D005146 ORTHO05D006752 1.9e-52 210.3 276 46.7
BolC9t57294H Brassica oleracea HOM05D005146 ORTHO05D006752 4.2e-52 209.1 157 65.6
Duzib170G0783 Durio zibethinus HOM05D005146 ORTHO05D006752 6.2e-48 195.3 274 42.3
CSS0002428 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 2.6e-46 189.9 270 44.1
MELO3C029148.2 Cucumis melo HOM05D005146 ORTHO05D006752 4.2e-44 182.6 171 56.7
Medtr3g114210 Medicago truncatula HOM05D005146 ORTHO05D006752 1.6e-43 180.6 159 65.4
Lj4A797T60 Lonicera japonica HOM05D005146 ORTHO05D006752 3.0e-34 149.8 92 75.0
BcaC04g20388 Brassica carinata HOM05D005146 ORTHO05D006752 1.4e-31 141.0 185 46.5
BolC8t52160H Brassica oleracea HOM05D005146 ORTHO05D032927 1.8e-31 140.6 261 38.7
BcaC07g41610 Brassica carinata HOM05D005146 ORTHO05D032927 6.9e-31 138.7 269 37.2
SEGI_30125 Sequoiadendron giganteum HOM05D005146 ORTHO05D006752 1.4e-28 131.0 92 69.6
Oeu039054.1 Olea europaea HOM05D000784 ORTHO05D000116 1.9e-28 130.6 79 73.4
C08p46100 Brassica napus HOM05D005146 ORTHO05D032927 3.0e-26 123.2 98 62.2
Lsat_1_v5_gn_2_8581 Lactuca sativa HOM05D000202 ORTHO05D000117 7.4e-25 118.6 140 44.3
Lsat_1_v5_gn_2_8661 Lactuca sativa HOM05D000202 ORTHO05D000117 6.3e-24 115.5 140 43.6
MELO3C032066.2 Cucumis melo HOM05D005146 ORTHO05D006752 1.4e-18 97.8 73 64.4
CAN.G1688.3 Capsicum annuum HOM05D005146 ORTHO05D011342 2.0e-14 84.0 56 67.9
Actinidia16979 Actinidia chinensis HOM05D005146 ORTHO05D006752 5.5e-12 75.9 82 48.8
BcaNung04119 Brassica carinata HOM05D001941 ORTHO05D002198 7.2e-12 75.5 45 75.6
MELO3C033356.2 Cucumis melo HOM05D005146 ORTHO05D166957 1.1e-09 68.2 48 66.7


User provided reference genes

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