Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g007800 Pisum sativum HOM05D005136 ORTHO05D006619 7.1e-90 334.0 175 100.0
Psat5g103000 Pisum sativum HOM05D005136 ORTHO05D006619 5.9e-68 261.2 142 98.6
Medtr3g116260 Medicago truncatula HOM05D005136 ORTHO05D006619 1.3e-59 233.4 149 87.2
Ca_15377_v3 Cicer arietinum L. HOM05D005136 ORTHO05D006619 3.8e-59 231.9 147 85.7
Glyma.04G123300 Glycine max HOM05D005136 ORTHO05D006619 1.6e-57 226.5 147 85.0
Lj3g0003138 Lotus japonicus HOM05D005136 ORTHO05D006619 2.1e-57 226.1 147 85.7
VMungo1215G0362 Vigna mungo HOM05D005136 ORTHO05D006619 3.0e-56 222.2 147 83.7
Phvul.002G127500 Phaseolus vulgaris HOM05D005136 ORTHO05D006619 8.8e-56 220.7 147 83.7
Rhsim11G0174400 Rhododendron simsii HOM05D005136 ORTHO05D006619 4.4e-55 218.4 161 76.4
FvH4_2g08450 Fragaria vesca HOM05D005136 ORTHO05D006619 5.7e-55 218.0 144 81.2
FAN24G0166 Fragaria x ananassa HOM05D005136 ORTHO05D006619 5.7e-55 218.0 144 81.2
FAN27G1698 Fragaria x ananassa HOM05D005136 ORTHO05D006619 5.7e-55 218.0 144 81.2
Manes.17G099700 Manihot esculenta HOM05D005136 ORTHO05D006619 5.7e-55 218.0 147 81.0
RcHm_v2.0_Chr6g0263731 Rosa chinensis HOM05D005136 ORTHO05D006619 9.8e-55 217.2 144 82.6
FAN15G2434 Fragaria x ananassa HOM05D005136 ORTHO05D006619 1.3e-54 216.9 144 80.6
Dinv23543 Davidia involucrata HOM05D005136 ORTHO05D006619 1.7e-54 216.5 166 73.5
Sed0024996 Sechium edule HOM05D005136 ORTHO05D006619 2.8e-54 215.7 147 79.6
Peaxi162Scf00346g00043 Petunia axillaris HOM05D005136 ORTHO05D006619 3.7e-54 215.3 146 79.5
Thecc.02G123900 Theobroma cacao HOM05D005136 ORTHO05D006619 4.8e-54 214.9 170 70.6
CsaV3_2G014570 Cucumis sativus L. HOM05D005136 ORTHO05D006619 6.3e-54 214.5 147 78.2
Hma1.2p1_1375F.1_g278970 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 6.3e-54 214.5 147 80.3
Hma1.2p1_3179F.1_g333696 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 6.3e-54 214.5 147 80.3
Potri.004G152700 Populus trichocarpa HOM05D005136 ORTHO05D006619 6.3e-54 214.5 147 78.9
Cfa005022 Carpinus fangiana HOM05D005136 ORTHO05D006619 8.3e-54 214.2 146 80.8
Haze_02365 Corylus avellana HOM05D005136 ORTHO05D006619 8.3e-54 214.2 146 80.8
Cc02_g17760 Coffea canephora HOM05D005136 ORTHO05D006619 1.1e-53 213.8 145 80.7
vmacro08119 Vaccinium macrocarpon HOM05D005136 ORTHO05D006619 1.4e-53 213.4 146 80.8
ClCG11G004520 Citrullus lanatus HOM05D005136 ORTHO05D006619 1.8e-53 213.0 147 78.2
CiPaw.05G062700 Carya illinoinensis HOM05D005136 ORTHO05D006619 7.0e-53 211.1 144 79.2
Cc02_g20820 Coffea canephora HOM05D005136 ORTHO05D006619 7.0e-53 211.1 145 80.0
MELO3C020986.2 Cucumis melo HOM05D005136 ORTHO05D006619 7.0e-53 211.1 147 77.6
Lalb_Chr19g0138591 Lupinus albus HOM05D005136 ORTHO05D006619 9.1e-53 210.7 145 78.6
Sopen08g026750 Solanum pennellii HOM05D005136 ORTHO05D006619 9.1e-53 210.7 147 78.2
Atru.chr8.1229 Acer truncatum HOM05D005136 ORTHO05D006619 1.6e-52 209.9 145 80.0
Glyma.09G214900 Glycine max HOM05D005136 ORTHO05D006619 2.0e-52 209.5 139 82.7
PGSC0003DMG400026262 Solanum tuberosum HOM05D005136 ORTHO05D006619 2.0e-52 209.5 147 77.6
CiPaw.06G136800 Carya illinoinensis HOM05D005136 ORTHO05D006619 3.5e-52 208.8 144 77.8
Nn1g02125 Nelumbo nucifera HOM05D005136 ORTHO05D006619 3.5e-52 208.8 144 77.1
MD05G1068400 Malus domestica HOM05D005136 ORTHO05D006619 4.5e-52 208.4 146 78.8
COL.COLO4_32439 Corchorus olitorius HOM05D005136 ORTHO05D006619 5.9e-52 208.0 147 76.9
Migut.B00252 Erythranthe guttata HOM05D005136 ORTHO05D006619 5.9e-52 208.0 146 76.7
Nitab4.5_0009564g0010 Nicotiana tabacum HOM05D005136 ORTHO05D006619 1.0e-51 207.2 147 76.9
Cpa.g.sc31.66 Carica papaya HOM05D005136 ORTHO05D006619 1.3e-51 206.8 146 76.7
QL11p043069 Quercus lobata HOM05D005136 ORTHO05D006619 1.3e-51 206.8 145 77.9
TAR628G0554 Trochodendron aralioides HOM05D005136 ORTHO05D006619 1.3e-51 206.8 146 75.3
TAR628G1226 Trochodendron aralioides HOM05D005136 ORTHO05D006619 1.3e-51 206.8 146 75.3
Dinv42084 Davidia involucrata HOM05D005136 ORTHO05D006619 2.2e-51 206.1 146 77.4
Gohir.D12G018500 Gossypium hirsutum HOM05D005136 ORTHO05D006619 2.2e-51 206.1 147 76.9
Gorai.008G018800 Gossypium raimondii HOM05D005136 ORTHO05D006619 2.2e-51 206.1 147 76.9
Solyc08g078240.4 Solanum lycopersicum HOM05D005136 ORTHO05D006619 2.2e-51 206.1 144 77.1
Lalb_Chr23g0265461 Lupinus albus HOM05D005136 ORTHO05D006619 2.9e-51 205.7 147 73.5
Ciclev10029521m.g Citrus clementina HOM05D005136 ORTHO05D006619 6.5e-51 204.5 145 75.2
DCAR_026977 Daucus carota HOM05D005136 ORTHO05D006619 6.5e-51 204.5 146 76.0
Gohir.A12G017900 Gossypium hirsutum HOM05D005136 ORTHO05D006619 8.5e-51 204.1 147 75.5
Duzib132G0024 Durio zibethinus HOM05D005136 ORTHO05D006619 1.1e-50 203.8 146 76.7
TAR625G1013 Trochodendron aralioides HOM05D005136 ORTHO05D006619 1.1e-50 203.8 146 77.4
MD10G1078600 Malus domestica HOM05D005136 ORTHO05D006619 1.9e-50 203.0 146 76.7
Eucgr.G00447 Eucalyptus grandis HOM05D005136 ORTHO05D006619 3.2e-50 202.2 146 74.7
PGR042G3747 Punica granatum HOM05D005136 ORTHO05D006619 4.2e-50 201.8 147 76.2
Prupe.8G100500 Prunus persica HOM05D005136 ORTHO05D006619 5.5e-50 201.4 146 78.8
Hund22263 Selenicereus undatus HOM05D005136 ORTHO05D006619 7.2e-50 201.1 146 77.4
CSS0002049 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 1.2e-49 200.3 146 76.7
CSS0016345 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 1.2e-49 200.3 146 76.7
CSS0049550 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 1.2e-49 200.3 146 76.7
CAN.G1312.12 Capsicum annuum HOM05D005136 ORTHO05D006619 1.6e-49 199.9 146 75.3
SGA_v2.0_scaffold106G30693 Striga asiatica HOM05D005136 ORTHO05D006619 1.6e-49 199.9 146 74.0
AUR62023928 Chenopodium quinoa HOM05D005136 ORTHO05D006619 2.1e-49 199.5 146 76.0
Aqoxy5G01670 Aquilegia oxysepala HOM05D005136 ORTHO05D006619 2.7e-49 199.1 147 74.8
AUR62038311 Chenopodium quinoa HOM05D005136 ORTHO05D006619 2.7e-49 199.1 146 76.0
MBI16_g37741_MAGBIO Magnolia biondii HOM05D005136 ORTHO05D006619 3.6e-49 198.7 145 76.6
CANSAT11G0677 Cannabis sativa HOM05D005136 ORTHO05D006619 4.7e-49 198.4 155 71.0
Oeu014338.1 Olea europaea HOM05D005136 ORTHO05D006619 6.1e-49 198.0 146 72.6
Ah.01g016850 Amaranthus hybridus HOM05D005136 ORTHO05D006619 8.0e-49 197.6 198 60.1
CSS0025161 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 1.0e-48 197.2 146 76.0
SalBow6G6037 Salvia bowleyana HOM05D005136 ORTHO05D006619 1.0e-48 197.2 146 72.6
Lj5P199T42 Lonicera japonica HOM05D005136 ORTHO05D006619 6.8e-48 194.5 146 75.3
PSO700G0271 Papaver somniferum HOM05D005136 ORTHO05D006619 1.2e-47 193.7 147 75.5
MSTRG.16796 Avicennia marina HOM05D005136 ORTHO05D006619 2.0e-47 193.0 146 73.3
Sc09g0004050 Simmondsia chinensis HOM05D005136 ORTHO05D006619 4.4e-47 191.8 148 73.6
Nn1g05055 Nelumbo nucifera HOM05D005136 ORTHO05D006619 7.5e-47 191.0 147 72.8
HPP92_013432 Vanilla planifolia HOM05D005136 ORTHO05D006619 9.8e-47 190.7 150 70.0
HPP92_027116 Vanilla planifolia HOM05D005136 ORTHO05D006619 9.8e-47 190.7 150 70.0
Lsat_1_v5_gn_7_89621 Lactuca sativa HOM05D005136 ORTHO05D006619 2.8e-46 189.1 148 69.6
EL10Ac9g21088 Beta vulgaris HOM05D005136 ORTHO05D006619 3.7e-46 188.7 137 77.4
Gohir.D02G202838 Gossypium hirsutum HOM05D005136 ORTHO05D006619 1.1e-45 187.2 142 70.4
Gorai.005G228100 Gossypium raimondii HOM05D005136 ORTHO05D006619 2.4e-45 186.0 142 70.4
Aa31LG1G2990 Aethionema arabicum HOM05D005136 ORTHO05D006619 3.1e-45 185.7 150 69.3
Gohir.A03G179300 Gossypium hirsutum HOM05D005136 ORTHO05D006619 7.0e-45 184.5 142 69.7
TWI31G0294 Tripterygium wilfordii HOM05D005136 ORTHO05D006619 7.0e-45 184.5 150 70.0
THA.LOC104823526 Tarenaya hassleriana HOM05D005136 ORTHO05D006619 1.6e-44 183.3 147 70.1
HanXRQChr05g0152051 Helianthus annuus HOM05D005136 ORTHO05D006619 2.7e-44 182.6 147 70.7
TWI79G0765 Tripterygium wilfordii HOM05D005136 ORTHO05D006619 5.9e-44 181.4 152 70.4
ATR1120G109 Amborella trichopoda HOM05D005136 ORTHO05D006619 7.7e-44 181.0 149 67.8
Thhalv10008721m.g Eutrema salsugineum HOM05D005136 ORTHO05D006619 1.3e-43 180.3 159 64.8
BcaB03g13232 Brassica carinata HOM05D005136 ORTHO05D006619 1.7e-43 179.9 152 67.8
CARHR012080 Cardamine hirsuta HOM05D005136 ORTHO05D006619 2.9e-43 179.1 151 67.5
unitig_37.g12818 Utricularia gibba HOM05D005136 ORTHO05D006619 3.8e-43 178.7 152 66.4
Carub.0001s1142 Capsella rubella HOM05D005136 ORTHO05D006619 5.0e-43 178.3 153 68.0
Sp1g10380 Schrenkiella parvula HOM05D005136 ORTHO05D006619 5.0e-43 178.3 152 67.8
AL1G22940 Arabidopsis lyrata HOM05D005136 ORTHO05D006619 6.6e-43 177.9 153 67.3
AT1G11760 Arabidopsis thaliana HOM05D005136 ORTHO05D006619 6.6e-43 177.9 152 66.4
TPR.G21542 Trifolium pratense HOM05D005136 ORTHO05D006619 1.1e-42 177.2 147 71.4
Actinidia00512 Actinidia chinensis HOM05D005136 ORTHO05D006619 2.1e-41 172.9 116 77.6
BolC8t49124H Brassica oleracea HOM05D004968 ORTHO05D005922 3.6e-41 172.2 147 68.0
C08p14950 Brassica napus HOM05D004968 ORTHO05D005922 8.0e-41 171.0 147 67.3
A08p33240 Brassica napus HOM05D004968 ORTHO05D005922 6.4e-38 161.4 136 65.4
BraA08t35243Z Brassica rapa HOM05D004968 ORTHO05D005922 6.4e-38 161.4 136 65.4
ECA236G0931 Erigeron canadensis HOM05D005136 ORTHO05D006619 5.4e-37 158.3 149 62.4
PSO170G5319 Papaver somniferum HOM05D005136 ORTHO05D006619 5.4e-37 158.3 116 76.7
Nitab4.5_0002601g0030 Nicotiana tabacum HOM05D005136 ORTHO05D006619 7.0e-37 157.9 109 77.1
Os10g0548400 Oryza sativa ssp. japonica HOM05D005136 ORTHO05D006619 9.2e-37 157.5 164 55.5
RcHm_v2.0_Chr6g0264001 Rosa chinensis HOM05D005136 ORTHO05D006619 3.5e-36 155.6 100 81.0
Zm00001eb284000 Zea mays HOM05D005136 ORTHO05D006619 2.3e-35 152.9 150 58.7
Prupe.5G020100 Prunus persica HOM05D005136 ORTHO05D006619 1.5e-34 150.2 149 58.4
SalBow6G1117 Salvia bowleyana HOM05D005136 ORTHO05D006619 9.5e-34 147.5 105 72.4
BcaB08g37416 Brassica carinata HOM05D005136 ORTHO05D006619 2.0e-31 139.8 146 59.6
SHI23962 Sapria himalayana HOM05D005136 ORTHO05D006619 1.3e-30 137.1 136 57.4
CSS0021040 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 4.9e-30 135.2 141 61.0
EL10Ac7g17776 Beta vulgaris HOM05D005136 ORTHO05D006619 6.4e-30 134.8 127 62.2
Atru.chr5.2947 Acer truncatum HOM05D005136 ORTHO05D006619 8.3e-30 134.4 89 77.5
Pp3c10_12480 Physcomitrium patens HOM05D005136 ORTHO05D006619 1.4e-29 133.7 148 55.4
SMO174G0113 Selaginella moellendorffii HOM05D005136 ORTHO05D006619 3.0e-27 125.9 136 52.9
CDE02G3080 Ceratophyllum demersum HOM05D005136 ORTHO05D006619 7.3e-26 121.3 106 63.2
Mapoly0003s0019 Marchantia polymorpha HOM05D005136 ORTHO05D006619 9.5e-26 120.9 147 49.7
EL10Ac8g18726 Beta vulgaris HOM05D006015 ORTHO05D007816 1.2e-25 120.6 85 74.1
EL10Ac9g21097 Beta vulgaris HOM05D006015 ORTHO05D006619 1.2e-25 120.6 85 74.1
Medtr3g116310 Medicago truncatula HOM05D005136 ORTHO05D006619 6.4e-22 108.2 78 75.6
Psat4g095600 Pisum sativum HOM05D005136 ORTHO05D006619 1.2e-20 104.0 79 68.4
EL10Ac1g02225 Beta vulgaris HOM05D005136 ORTHO05D006619 3.6e-17 92.4 166 42.2
Lj4g0027023 Lotus japonicus HOM05D005136 ORTHO05D006619 4.0e-16 89.0 140 47.1
Sp2g23220 Schrenkiella parvula HOM05D005136 ORTHO05D006619 5.2e-16 88.6 88 55.7
Gohir.A03G179400 Gossypium hirsutum HOM05D005136 ORTHO05D006619 8.9e-16 87.8 69 65.2
Oeu014337.1 Olea europaea HOM05D005136 ORTHO05D006619 1.2e-15 87.4 79 51.9
Gorai.005G228200 Gossypium raimondii HOM05D005136 ORTHO05D006619 1.5e-15 87.0 69 65.2
AagrBONN_evm.TU.Sc2ySwM_369.532 Anthoceros agrestis HOM05D005136 ORTHO05D006619 2.0e-15 86.7 146 39.0
Gohir.D02G202857 Gossypium hirsutum HOM05D005136 ORTHO05D006619 2.0e-15 86.7 69 63.8
Thecc.02G123800 Theobroma cacao HOM05D005136 ORTHO05D006619 5.8e-15 85.1 71 62.0
Hma1.2p1_0854F.1_g228935 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 9.9e-15 84.3 71 59.2
Hma1.2p1_2665F.1_g326510 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 9.9e-15 84.3 71 59.2
COL.COLO4_32440 Corchorus olitorius HOM05D005136 ORTHO05D006619 2.9e-14 82.8 69 58.0
Sc09g0004030 Simmondsia chinensis HOM05D005136 ORTHO05D006619 3.2e-13 79.3 71 67.6
Nitab4.5_0012262g0010 Nicotiana tabacum HOM05D005136 ORTHO05D006619 1.1e-10 70.9 72 50.0
Nitab4.5_0002541g0070 Nicotiana tabacum HOM05D005136 ORTHO05D024799 4.3e-10 68.9 82 45.1
ECA233G0803 Erigeron canadensis HOM05D005136 ORTHO05D006619 2.1e-09 66.6 125 42.4
Os07g0229100 Oryza sativa ssp. japonica HOM05D011003 ORTHO05D012370 3.1e-08 62.8 72 47.2
CAN.G1435.13 Capsicum annuum HOM05D005136 ORTHO05D024799 6.8e-08 61.6 70 45.7
HPP92_014777 Vanilla planifolia HOM05D005136 ORTHO05D006619 2.9e-06 56.2 72 43.1


User provided reference genes

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