Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g005320 Pisum sativum HOM05D008028 ORTHO05D010005 4.0e-47 191.0 93 100.0
Medtr3g117240 Medicago truncatula HOM05D008028 ORTHO05D010005 2.2e-37 158.7 94 84.0
TPR.G32190 Trifolium pratense HOM05D008028 ORTHO05D010005 3.7e-37 157.9 93 84.9
Phvul.009G004900 Phaseolus vulgaris HOM05D008028 ORTHO05D010005 4.6e-35 151.0 93 76.3
Lj1g0026701 Lotus japonicus HOM05D008028 ORTHO05D010005 4.3e-33 144.4 93 76.3
Glyma.04G009700 Glycine max HOM05D008028 ORTHO05D010005 7.3e-33 143.7 94 74.5
Glyma.06G009600 Glycine max HOM05D008028 ORTHO05D010005 1.4e-31 139.4 94 72.3
arahy.Tifrunner.gnm1.ann1.JRR1U5 Arachis hypogaea HOM05D008028 ORTHO05D010005 2.1e-27 125.6 93 68.8
arahy.Tifrunner.gnm1.ann1.04TBQJ Arachis hypogaea HOM05D008028 ORTHO05D010005 2.9e-21 105.1 79 65.8
Thecc.02G080100 Theobroma cacao HOM05D008028 ORTHO05D010005 9.2e-20 100.1 83 60.2
Sed0023664 Sechium edule HOM05D008028 ORTHO05D010005 6.0e-19 97.4 94 59.6
Atru.chr5.3084 Acer truncatum HOM05D008028 ORTHO05D010005 1.0e-18 96.7 94 55.3
GSVIVG01023830001 Vitis vinifera HOM05D008028 ORTHO05D010005 1.7e-18 95.9 87 58.6
CsaV3_7G000150 Cucumis sativus L. HOM05D008028 ORTHO05D010005 2.3e-18 95.5 75 69.3
MD05G1060500 Malus domestica HOM05D008028 ORTHO05D010005 6.6e-18 94.0 93 58.1
Hma1.2p1_0066F.1_g036100 Hydrangea macrophylla HOM05D008028 ORTHO05D010005 8.6e-18 93.6 92 56.5
Prupe.8G090300 Prunus persica HOM05D008028 ORTHO05D010005 1.1e-17 93.2 94 57.4
MELO3C029051.2 Cucumis melo HOM05D008028 ORTHO05D010005 1.9e-17 92.4 74 66.2
QL11p045140 Quercus lobata HOM05D008028 ORTHO05D010005 1.9e-17 92.4 92 55.4
QL11p045265 Quercus lobata HOM05D008028 ORTHO05D010005 1.9e-17 92.4 92 55.4
CiPaw.05G070000 Carya illinoinensis HOM05D008028 ORTHO05D010005 2.5e-17 92.0 92 54.3
Dinv42036 Davidia involucrata HOM05D008028 ORTHO05D010005 2.5e-17 92.0 91 54.9
MD10G1068400 Malus domestica HOM05D008028 ORTHO05D010005 4.3e-17 91.3 93 54.8
ClCG02G004770 Citrullus lanatus HOM05D008028 ORTHO05D010005 1.2e-16 89.7 74 67.6
Lalb_Chr23g0265241 Lupinus albus HOM05D008028 ORTHO05D010005 1.4e-15 86.3 103 48.5
Cfa005059 Carpinus fangiana HOM05D008028 ORTHO05D010005 1.8e-15 85.9 95 51.6
FvH4_2g09740 Fragaria vesca HOM05D008028 ORTHO05D010005 1.8e-15 85.9 86 55.8
FAN24G2608 Fragaria x ananassa HOM05D008028 ORTHO05D010005 1.8e-15 85.9 86 55.8
FAN24G3146 Fragaria x ananassa HOM05D008028 ORTHO05D010005 1.8e-15 85.9 86 55.8
COL.COLO4_25993 Corchorus olitorius HOM05D008028 ORTHO05D010005 3.1e-15 85.1 83 55.4
RcHm_v2.0_Chr6g0266031 Rosa chinensis HOM05D008028 ORTHO05D010005 4.0e-15 84.7 97 50.5
Haze_02324 Corylus avellana HOM05D008028 ORTHO05D010005 6.8e-15 84.0 95 49.5
FAN15G3565 Fragaria x ananassa HOM05D008028 ORTHO05D010005 6.8e-15 84.0 86 54.7
FAN27G0523 Fragaria x ananassa HOM05D008028 ORTHO05D010005 6.8e-15 84.0 86 54.7
Sabra04G0106000 Salix brachista HOM05D000041 ORTHO05D010005 1.2e-14 83.2 84 52.4
TAR628G0762 Trochodendron aralioides HOM05D008028 ORTHO05D010005 1.2e-14 83.2 94 52.1
Manes.04G086850 Manihot esculenta HOM05D008028 ORTHO05D010005 4.4e-14 81.3 94 46.8
Potri.009G120300 Populus trichocarpa HOM05D008028 ORTHO05D010005 4.4e-14 81.3 85 52.9
FAN20G2021 Fragaria x ananassa HOM05D008028 ORTHO05D010005 7.6e-14 80.5 86 54.7
Sabra09G0092600 Salix brachista HOM05D008028 ORTHO05D010005 7.6e-14 80.5 94 48.9
Manes.11G091000 Manihot esculenta HOM05D008028 ORTHO05D010005 1.7e-13 79.3 83 51.8
Gohir.A01G004200 Gossypium hirsutum HOM05D008028 ORTHO05D010005 2.9e-13 78.6 94 45.7
Eucgr.G01698 Eucalyptus grandis HOM05D008028 ORTHO05D010005 6.4e-13 77.4 91 51.6
Gohir.D01G004200 Gossypium hirsutum HOM05D008028 ORTHO05D010005 1.9e-12 75.9 94 44.7
Gorai.002G005100 Gossypium raimondii HOM05D008028 ORTHO05D010005 1.9e-12 75.9 94 44.7
Ciclev10029664m.g Citrus clementina HOM05D008028 ORTHO05D010005 3.2e-12 75.1 94 46.8
Actinidia07487 Actinidia chinensis HOM05D008028 ORTHO05D010005 3.5e-11 71.6 83 53.0
Rhsim11G0180600 Rhododendron simsii HOM05D008028 ORTHO05D010005 3.5e-11 71.6 90 51.1
Actinidia00552 Actinidia chinensis HOM05D008028 ORTHO05D010005 6.0e-11 70.9 86 52.3
CSS0001295 Camellia sinensis var. sinensis HOM05D008028 ORTHO05D010005 1.0e-10 70.1 96 51.0
CSS0038379 Camellia sinensis var. sinensis HOM05D008028 ORTHO05D010005 1.0e-10 70.1 96 51.0
Potri.004G158800 Populus trichocarpa HOM05D008028 ORTHO05D010005 1.0e-10 70.1 56 62.5
Nn1g05797 Nelumbo nucifera HOM05D008028 ORTHO05D010005 1.7e-10 69.3 73 56.2
CANSAT11G2137 Cannabis sativa HOM05D008028 ORTHO05D010005 3.9e-10 68.2 54 66.7
PSO541G4922 Papaver somniferum HOM05D008028 ORTHO05D010005 1.1e-09 66.6 80 50.0
Nn5g29713 Nelumbo nucifera HOM05D008028 ORTHO05D010005 2.5e-09 65.5 90 45.6
EL10Ac9g21688 Beta vulgaris HOM05D008028 ORTHO05D010005 4.3e-09 64.7 69 49.3
AUR62011282 Chenopodium quinoa HOM05D008028 ORTHO05D010005 7.3e-09 63.9 66 50.0
BcaNung01280 Brassica carinata HOM05D008028 ORTHO05D010005 1.6e-08 62.8 112 38.4
BolC1t00039H Brassica oleracea HOM05D008028 ORTHO05D010005 1.6e-08 62.8 112 38.4
BraA01t00029Z Brassica rapa HOM05D008028 ORTHO05D010005 2.1e-08 62.4 113 38.1
AL7G11040 Arabidopsis lyrata HOM05D008028 ORTHO05D010005 2.8e-08 62.0 49 57.1
vmacro17456 Vaccinium macrocarpon HOM05D008028 ORTHO05D010005 2.8e-08 62.0 85 49.4
C01p00330 Brassica napus HOM05D008028 ORTHO05D010005 3.6e-08 61.6 53 56.6
Hma1.2p1_0851F.1_g228390 Hydrangea macrophylla HOM05D008028 ORTHO05D010005 3.6e-08 61.6 63 55.6
Hma1.2p1_2203F.1_g317070 Hydrangea macrophylla HOM05D008028 ORTHO05D010005 3.6e-08 61.6 63 55.6
A01p00220 Brassica napus HOM05D008028 ORTHO05D010005 4.8e-08 61.2 112 37.5
Thhalv10027119m.g Eutrema salsugineum HOM05D008028 ORTHO05D010005 4.8e-08 61.2 101 39.6
A08p23830 Brassica napus HOM05D001347 ORTHO05D001198 2.4e-07 58.9 47 61.7
BraA08t34335Z Brassica rapa HOM05D001347 ORTHO05D001198 2.4e-07 58.9 47 61.7
Carub.0007s0098 Capsella rubella HOM05D008028 ORTHO05D010005 2.4e-07 58.9 101 36.6
Sp7g36720 Schrenkiella parvula HOM05D008028 ORTHO05D010005 3.1e-07 58.5 112 37.5
BcaB03g12242 Brassica carinata HOM05D001347 ORTHO05D001198 4.0e-07 58.2 47 61.7
BcaC01g00281 Brassica carinata HOM05D001347 ORTHO05D001198 4.0e-07 58.2 47 61.7
C03p77600 Brassica napus HOM05D001347 ORTHO05D001198 4.0e-07 58.2 47 61.7
BolC3t20017H Brassica oleracea HOM05D001347 ORTHO05D001198 4.0e-07 58.2 47 61.7
PSO675G1135 Papaver somniferum HOM05D008028 ORTHO05D010005 1.2e-06 56.6 71 47.9


User provided reference genes

Program Settings