Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g004720 Pisum sativum HOM05D004987 ORTHO05D005960 1.8e-276 955.3 475 100.0
Medtr3g117360 Medicago truncatula HOM05D004987 ORTHO05D005960 1.0e-260 902.9 480 93.3
Ca_15341_v3 Cicer arietinum L. HOM05D004987 ORTHO05D005960 1.6e-256 889.0 475 92.2
Lj4g0022097 Lotus japonicus HOM05D004987 ORTHO05D005960 6.0e-248 860.5 475 89.1
VMungo1215G0994 Vigna mungo HOM05D004987 ORTHO05D005960 3.0e-247 858.2 475 88.8
Glyma.07G266900 Glycine max HOM05D004987 ORTHO05D005960 3.6e-245 851.3 475 88.2
Phvul.003G085301 Phaseolus vulgaris HOM05D004987 ORTHO05D005960 4.0e-244 847.8 475 88.4
Glyma.17G007300 Glycine max HOM05D004987 ORTHO05D005960 2.6e-243 845.1 475 87.8
Medtr4g062080 Medicago truncatula HOM05D004987 ORTHO05D005960 1.9e-238 828.9 479 86.0
Lalb_Chr20g0119411 Lupinus albus HOM05D004987 ORTHO05D005960 3.2e-233 811.6 480 82.9
arahy.Tifrunner.gnm1.ann1.158NIU Arachis hypogaea HOM05D004987 ORTHO05D005960 1.5e-230 802.7 484 81.4
arahy.Tifrunner.gnm1.ann1.K2RD5P Arachis hypogaea HOM05D004987 ORTHO05D005960 1.2e-229 799.7 483 80.7
arahy.Tifrunner.gnm1.ann1.URKQ8K Arachis hypogaea HOM05D004987 ORTHO05D005960 2.8e-229 798.5 496 79.6
TPR.G32192 Trifolium pratense HOM05D004987 ORTHO05D005960 1.2e-227 793.1 432 90.3
arahy.Tifrunner.gnm1.ann1.016YCC Arachis hypogaea HOM05D004987 ORTHO05D005960 3.5e-224 781.6 516 75.8
CiPaw.09G105700 Carya illinoinensis HOM05D004987 ORTHO05D005960 1.8e-220 769.2 479 76.6
QL05p068327 Quercus lobata HOM05D004987 ORTHO05D005960 1.8e-220 769.2 478 78.0
QL05p068818 Quercus lobata HOM05D004987 ORTHO05D005960 1.8e-220 769.2 478 78.0
CiPaw.10G079900 Carya illinoinensis HOM05D004987 ORTHO05D005960 4.2e-217 758.1 479 76.4
Haze_06979 Corylus avellana HOM05D004987 ORTHO05D005960 5.1e-215 751.1 506 72.3
CsaV3_1G015810 Cucumis sativus L. HOM05D004987 ORTHO05D005960 5.6e-214 747.7 479 74.7
ClCG01G010690 Citrullus lanatus HOM05D004987 ORTHO05D005960 9.6e-214 746.9 479 74.7
CANSAT01G2438 Cannabis sativa HOM05D004987 ORTHO05D005960 3.6e-213 745.0 481 74.8
GSVIVG01007214001 Vitis vinifera HOM05D004987 ORTHO05D005960 3.6e-213 745.0 479 73.7
Sed0000076 Sechium edule HOM05D004987 ORTHO05D005960 8.1e-213 743.8 479 74.1
Prupe.4G007100 Prunus persica HOM05D004987 ORTHO05D005960 3.1e-212 741.9 480 76.7
Dinv01708 Davidia involucrata HOM05D004987 ORTHO05D005960 3.4e-211 738.4 490 73.9
TAR627G0360 Trochodendron aralioides HOM05D004987 ORTHO05D005960 9.9e-211 736.9 485 73.6
Hma1.2p1_0657F.1_g196910 Hydrangea macrophylla HOM05D004987 ORTHO05D005960 1.3e-210 736.5 478 73.4
TAR626G0553 Trochodendron aralioides HOM05D004987 ORTHO05D005960 4.9e-210 734.6 483 73.3
Manes.09G081692 Manihot esculenta HOM05D004987 ORTHO05D005960 8.4e-210 733.8 479 73.7
Thecc.06G237200 Theobroma cacao HOM05D004987 ORTHO05D005960 1.9e-209 732.6 479 73.7
Duzib235G0100 Durio zibethinus HOM05D004987 ORTHO05D005960 1.6e-208 729.6 479 73.7
TWI38G0401 Tripterygium wilfordii HOM05D004987 ORTHO05D005960 1.6e-208 729.6 477 73.6
Gohir.A06G204500 Gossypium hirsutum HOM05D004987 ORTHO05D005960 2.1e-208 729.2 477 73.0
Atru.chr3.1439 Acer truncatum HOM05D004987 ORTHO05D005960 3.5e-208 728.4 477 74.0
MD00G1058500 Malus domestica HOM05D004987 ORTHO05D005960 3.5e-208 728.4 478 74.9
RcHm_v2.0_Chr5g0000801 Rosa chinensis HOM05D004987 ORTHO05D005960 1.8e-207 726.1 477 75.1
Gohir.D06G217000 Gossypium hirsutum HOM05D004987 ORTHO05D005960 2.3e-207 725.7 477 72.5
Gorai.010G249200 Gossypium raimondii HOM05D004987 ORTHO05D005960 3.0e-207 725.3 477 72.5
Ciclev10015100m.g Citrus clementina HOM05D004987 ORTHO05D005960 5.1e-207 724.5 477 72.5
Lj2g0000431 Lotus japonicus HOM05D004987 ORTHO05D005960 9.6e-206 720.3 477 78.0
AUR62018393 Chenopodium quinoa HOM05D004987 ORTHO05D005960 2.8e-205 718.8 483 72.3
ECA248G1395 Erigeron canadensis HOM05D004987 ORTHO05D005960 1.4e-204 716.5 485 70.9
Potri.006G017000 Populus trichocarpa HOM05D004987 ORTHO05D005960 4.0e-204 714.9 482 71.2
FvH4_3g00590 Fragaria vesca HOM05D004987 ORTHO05D005960 9.0e-204 713.8 477 73.6
PGR004G2886 Punica granatum HOM05D004987 ORTHO05D005960 4.5e-203 711.4 480 70.4
FAN25G3815 Fragaria x ananassa HOM05D004987 ORTHO05D005960 5.8e-203 711.1 477 73.4
HanXRQChr01g0004771 Helianthus annuus HOM05D004987 ORTHO05D005960 1.0e-202 710.3 481 71.9
Cc09_g00600 Coffea canephora HOM05D004987 ORTHO05D005960 2.9e-202 708.8 492 70.9
Ah.02g126930 Amaranthus hybridus HOM05D004987 ORTHO05D005960 6.5e-202 707.6 478 71.3
EL10Ac3g07283 Beta vulgaris HOM05D004987 ORTHO05D005960 1.4e-201 706.4 483 71.6
MSTRG.13111 Avicennia marina HOM05D004987 ORTHO05D005960 3.5e-200 701.8 475 71.4
CSS0019037 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 7.9e-200 700.7 484 70.9
CSS0028023 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 1.0e-199 700.3 485 70.7
Peaxi162Scf00488g00925 Petunia axillaris HOM05D004987 ORTHO05D005960 5.1e-199 698.0 483 70.2
Actinidia26840 Actinidia chinensis HOM05D004987 ORTHO05D005960 8.7e-199 697.2 483 69.8
Nn1g07472 Nelumbo nucifera HOM05D004987 ORTHO05D005960 2.5e-198 695.7 483 69.4
Lsat_1_v5_gn_6_62021 Lactuca sativa HOM05D004987 ORTHO05D005960 4.3e-198 694.9 482 70.5
MSTRG.14600 Avicennia marina HOM05D004987 ORTHO05D005960 7.4e-198 694.1 475 70.7
CSS0011246 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 9.6e-198 693.7 484 70.5
Migut.M01428 Erythranthe guttata HOM05D004987 ORTHO05D005960 1.6e-197 693.0 475 70.1
Sopen08g019660 Solanum pennellii HOM05D004987 ORTHO05D005960 4.8e-197 691.4 480 69.6
Solyc08g065990.3 Solanum lycopersicum HOM05D004987 ORTHO05D005960 1.4e-196 689.9 480 69.2
Oeu030104.1 Olea europaea HOM05D004987 ORTHO05D005960 2.4e-196 689.1 475 70.1
Aa31LG2G12480 Aethionema arabicum HOM05D004987 ORTHO05D005960 4.1e-196 688.3 479 70.1
PGSC0003DMG400025463 Solanum tuberosum HOM05D004987 ORTHO05D005960 1.2e-195 686.8 481 69.2
Nitab4.5_0000318g0050 Nicotiana tabacum HOM05D004987 ORTHO05D005960 2.0e-195 686.0 480 68.3
CAN.G9.5 Capsicum annuum HOM05D004987 ORTHO05D005960 5.9e-195 684.5 480 68.8
Aqoxy5G03428 Aquilegia oxysepala HOM05D004987 ORTHO05D005960 1.7e-194 682.9 507 66.5
Lj2C259G8 Lonicera japonica HOM05D004987 ORTHO05D005960 1.7e-194 682.9 475 71.4
DCAR_014269 Daucus carota HOM05D004987 ORTHO05D005960 1.1e-193 680.2 482 69.7
SalBow8G4301 Salvia bowleyana HOM05D004987 ORTHO05D005960 1.9e-193 679.5 475 68.2
Sp7g14970 Schrenkiella parvula HOM05D004987 ORTHO05D005960 1.9e-193 679.5 481 69.0
Carub.0007s2509 Capsella rubella HOM05D004987 ORTHO05D005960 1.2e-192 676.8 480 68.3
Sc13g0000910 Simmondsia chinensis HOM05D004987 ORTHO05D005960 2.1e-192 676.0 443 71.3
MBI19_g25589_MAGBIO Magnolia biondii HOM05D004987 ORTHO05D005960 6.1e-192 674.5 481 68.6
SGA_v2.0_scaffold54G19512 Striga asiatica HOM05D004987 ORTHO05D005960 1.3e-191 673.3 475 68.2
Oeu057036.1 Olea europaea HOM05D004987 ORTHO05D005960 3.9e-191 671.8 475 69.5
AL7G38570 Arabidopsis lyrata HOM05D004987 ORTHO05D005960 6.7e-191 671.0 481 68.0
CARHR222790 Cardamine hirsuta HOM05D004987 ORTHO05D005960 6.7e-191 671.0 481 68.2
ATR0594G143 Amborella trichopoda HOM05D004987 ORTHO05D005960 7.4e-190 667.5 486 66.9
CDE07G0546 Ceratophyllum demersum HOM05D004987 ORTHO05D005960 1.3e-189 666.8 475 68.4
Thhalv10025117m.g Eutrema salsugineum HOM05D004987 ORTHO05D005960 3.7e-189 665.2 481 67.8
SGA_v2.0_scaffold111G31506 Striga asiatica HOM05D004987 ORTHO05D005960 3.7e-189 665.2 495 65.7
AT4G16440 Arabidopsis thaliana HOM05D004987 ORTHO05D005960 6.3e-189 664.5 480 67.7
vmacro03626 Vaccinium macrocarpon HOM05D004987 ORTHO05D005960 6.3e-189 664.5 484 67.1
C01p26430 Brassica napus HOM05D004987 ORTHO05D005960 8.2e-189 664.1 481 68.4
BcaNung00197 Brassica carinata HOM05D004987 ORTHO05D005960 1.4e-188 663.3 481 67.8
BcaC09g50343 Brassica carinata HOM05D004987 ORTHO05D005960 2.4e-188 662.5 481 68.2
BolC1t02590H Brassica oleracea HOM05D004987 ORTHO05D005960 2.4e-188 662.5 481 68.2
A01p21160 Brassica napus HOM05D004987 ORTHO05D005960 4.1e-188 661.8 481 67.8
PSO017G3064 Papaver somniferum HOM05D004987 ORTHO05D005960 2.0e-187 659.4 488 67.2
MELO3C025535.2 Cucumis melo HOM05D004987 ORTHO05D005960 3.4e-187 658.7 415 74.2
PSO675G1563 Papaver somniferum HOM05D004987 ORTHO05D005960 6.5e-186 654.4 487 66.5
Sabra16G0013000 Salix brachista HOM05D004987 ORTHO05D005960 5.5e-185 651.4 570 58.6
Rhsim13G0142900 Rhododendron simsii HOM05D004987 ORTHO05D005960 7.2e-185 651.0 456 68.6
BraA01t02026Z Brassica rapa HOM05D004987 ORTHO05D005960 2.1e-184 649.4 505 64.8
unitig_749.g13618 Utricularia gibba HOM05D004987 ORTHO05D005960 4.6e-184 648.3 475 65.7
Os03g0748700 Oryza sativa ssp. japonica HOM05D004987 ORTHO05D005960 1.8e-183 646.4 480 65.0
Zm00001eb057200 Zea mays HOM05D004987 ORTHO05D005960 3.3e-182 642.1 479 64.3
Zm00001eb214910 Zea mays HOM05D004987 ORTHO05D005960 7.4e-182 641.0 480 64.6
Lsat_1_v5_gn_0_32381 Lactuca sativa HOM05D004987 ORTHO05D005960 1.1e-180 637.1 465 68.4
Nitab4.5_0002021g0020 Nicotiana tabacum HOM05D004987 ORTHO05D005960 1.8e-180 636.3 481 64.7
SHI24440 Sapria himalayana HOM05D004987 ORTHO05D005960 1.3e-178 630.2 498 63.5
Eucgr.D01441 Eucalyptus grandis HOM05D004987 ORTHO05D005960 1.6e-176 623.2 430 71.2
AUR62030265 Chenopodium quinoa HOM05D004987 ORTHO05D005960 3.0e-175 619.0 415 71.1
Sabra06G0012100 Salix brachista HOM05D004987 ORTHO05D005960 2.4e-172 609.4 515 60.8
Cc10_g02370 Coffea canephora HOM05D004987 ORTHO05D005960 5.5e-169 598.2 559 58.0
SMO356G0034 Selaginella moellendorffii HOM05D004987 ORTHO05D005960 2.3e-167 592.8 479 61.8
AagrBONN_evm.TU.Sc2ySwM_368.1142 Anthoceros agrestis HOM05D004987 ORTHO05D005960 3.0e-167 592.4 490 59.4
Mapoly0020s0065 Marchantia polymorpha HOM05D004987 ORTHO05D005960 4.4e-166 588.6 490 58.8
Lsat_1_v5_gn_6_62041 Lactuca sativa HOM05D004987 ORTHO05D005960 9.7e-166 587.4 481 62.0
Pp3c6_16630 Physcomitrium patens HOM05D004987 ORTHO05D005960 5.3e-164 581.6 476 59.5
MD10G1336400 Malus domestica HOM05D004987 ORTHO05D005960 6.5e-162 574.7 425 68.2
vmacro23178 Vaccinium macrocarpon HOM05D004987 ORTHO05D005960 2.1e-144 516.5 413 63.2
Potri.016G008700 Populus trichocarpa HOM05D004987 ORTHO05D005960 1.0e-143 514.2 358 70.4
CsaV3_UNG059470 Cucumis sativus L. HOM05D004987 ORTHO05D005960 3.2e-140 502.7 497 54.7
Cpa.g.sc27.253 Carica papaya HOM05D004987 ORTHO05D005960 6.6e-138 495.0 476 55.3
Cre03.g200550 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 3.2e-100 369.8 598 39.5
SEGI_15851 Sequoiadendron giganteum HOM05D004987 ORTHO05D005960 1.0e-98 364.8 251 68.5
MCO07G565 Micromonas commoda HOM05D004987 ORTHO05D005960 3.0e-98 363.2 526 43.9
HPP92_013953 Vanilla planifolia HOM05D004987 ORTHO05D005960 1.0e-90 338.2 252 65.5
Lsat_1_v5_gn_6_62060 Lactuca sativa HOM05D004987 ORTHO05D005960 5.7e-81 305.8 210 73.3
AagrBONN_evm.TU.Sc2ySwM_368.3306 Anthoceros agrestis HOM05D004987 ORTHO05D005960 1.3e-77 294.7 210 65.2
PRCOL_00000051 Prasinoderma coloniale HOM05D004987 ORTHO05D005960 1.7e-77 294.3 548 37.4
Ciclev10027102m.g Citrus clementina HOM05D004987 ORTHO05D005960 9.3e-76 288.5 182 69.2
ATR0751G100 Amborella trichopoda HOM05D004987 ORTHO05D005960 3.9e-74 283.1 250 55.6
Atru.chr1.2336 Acer truncatum HOM05D004987 ORTHO05D005960 1.7e-72 277.7 381 44.9
arahy.Tifrunner.gnm1.ann1.24PAJQ Arachis hypogaea HOM05D004987 ORTHO05D005960 8.5e-69 265.4 431 40.8
FAN21G3552 Fragaria x ananassa HOM05D004987 ORTHO05D005960 5.1e-66 256.1 181 74.6
Ciclev10004004m.g Citrus clementina HOM05D004987 ORTHO05D005960 8.0e-59 232.3 182 58.8
TWI38G1931 Tripterygium wilfordii HOM05D004987 ORTHO05D005960 2.6e-57 227.3 256 48.8
Cfa026410 Carpinus fangiana HOM05D004987 ORTHO05D005960 2.4e-55 220.7 491 33.2
Aqoxy4G02991 Aquilegia oxysepala HOM05D000252 ORTHO05D000307 9.7e-49 198.7 170 59.4
arahy.Tifrunner.gnm1.ann1.4D4U0P Arachis hypogaea HOM05D004987 ORTHO05D005960 1.1e-44 185.3 212 51.9
CBR_g26339 Chara braunii HOM05D004987 ORTHO05D005960 1.4e-42 178.3 382 33.2
Cre03.g199800 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 1.8e-39 167.9 454 27.8
Cre09.g396600 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 3.8e-37 160.2 453 27.2
Aqoxy6G02697 Aquilegia oxysepala HOM05D004987 ORTHO05D005960 3.0e-34 150.6 212 41.5
arahy.Tifrunner.gnm1.ann1.GKV1XW Arachis hypogaea HOM05D004987 ORTHO05D005960 1.2e-27 128.6 178 47.8
TPR.G35318 Trifolium pratense HOM05D004987 ORTHO05D005960 4.6e-22 110.2 62 91.9
AagrBONN_evm.TU.Sc2ySwM_368.1145 Anthoceros agrestis HOM05D004987 ORTHO05D005960 8.0e-19 99.4 135 42.2
MELO3C000413.2 Cucumis melo HOM05D004987 ORTHO05D005960 4.0e-18 97.1 65 78.5
arahy.Tifrunner.gnm1.ann1.YI5A3W Arachis hypogaea HOM05D004987 ORTHO05D005960 9.8e-17 92.4 113 47.8
GSVIVG01005416001 Vitis vinifera HOM05D004987 ORTHO05D005960 1.9e-15 88.2 65 69.2
arahy.Tifrunner.gnm1.ann1.N1GFR4 Arachis hypogaea HOM05D004987 ORTHO05D005960 4.1e-15 87.0 256 26.2
arahy.Tifrunner.gnm1.ann1.028TPL Arachis hypogaea HOM05D004987 ORTHO05D005960 1.5e-12 78.6 70 55.7
PSO339G0319 Papaver somniferum HOM05D004987 ORTHO05D005960 1.2e-09 68.9 69 58.0
PSO832G0476 Papaver somniferum HOM05D000145 ORTHO05D001435 4.4e-09 67.0 68 57.4
AagrBONN_evm.TU.Sc2ySwM_368.1144 Anthoceros agrestis HOM05D004987 ORTHO05D005960 5.4e-07 60.1 67 50.7


User provided reference genes

Program Settings