Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g004600 Pisum sativum HOM05D003887 ORTHO05D004523 8.2e-70 266.9 134 100.0
Psat3g027720 Pisum sativum HOM05D001091 ORTHO05D004523 2.6e-60 235.3 126 91.3
Medtr2g088720 Medicago truncatula HOM05D003887 ORTHO05D004523 1.0e-59 233.4 134 83.6
TPR.G25788 Trifolium pratense HOM05D003887 ORTHO05D004523 8.0e-57 223.8 126 86.5
Medtr7g106580 Medicago truncatula HOM05D003887 ORTHO05D004523 1.8e-56 222.6 134 82.1
Medtr7g106600 Medicago truncatula HOM05D003887 ORTHO05D004523 1.2e-55 219.9 131 82.4
Ca_09068_v3 Cicer arietinum L. HOM05D003887 ORTHO05D004523 1.8e-53 212.6 134 78.4
Glyma.07G068300 Glycine max HOM05D003887 ORTHO05D004523 8.5e-51 203.8 130 76.9
Glyma.03G203800 Glycine max HOM05D003887 ORTHO05D004523 5.5e-50 201.1 128 77.3
Phvul.001G204200 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 3.6e-49 198.4 127 78.0
Lj1g0007196 Lotus japonicus HOM05D003887 ORTHO05D004523 1.4e-48 196.4 134 71.6
Phvul.001G197300 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 1.8e-48 196.1 130 75.4
Manes.08G035800 Manihot esculenta HOM05D003887 ORTHO05D004523 1.7e-46 189.5 124 70.2
TWI18G1123 Tripterygium wilfordii HOM05D003887 ORTHO05D004523 2.2e-46 189.1 129 71.3
VMungo1383G2471 Vigna mungo HOM05D003887 ORTHO05D004523 3.7e-46 188.3 128 72.7
CiPaw.09G022700 Carya illinoinensis HOM05D003887 ORTHO05D004523 4.9e-46 188.0 125 71.2
Glyma.16G034300 Glycine max HOM05D003887 ORTHO05D004523 3.1e-45 185.3 130 70.0
VMungo1215G2564 Vigna mungo HOM05D003887 ORTHO05D004523 3.1e-45 185.3 128 72.7
Potri.016G067200 Populus trichocarpa HOM05D003887 ORTHO05D004523 7.0e-45 184.1 127 69.3
FvH4_6g20690 Fragaria vesca HOM05D003887 ORTHO05D004523 3.5e-44 181.8 124 70.2
FAN05G1982 Fragaria x ananassa HOM05D003887 ORTHO05D004523 3.5e-44 181.8 124 70.2
FAN14G0913 Fragaria x ananassa HOM05D003887 ORTHO05D004523 3.5e-44 181.8 124 70.2
arahy.Tifrunner.gnm1.ann1.Z0QHZD Arachis hypogaea HOM05D003887 ORTHO05D004523 4.5e-44 181.4 127 70.9
Lalb_Chr20g0111271 Lupinus albus HOM05D003887 ORTHO05D004523 5.9e-44 181.0 121 73.6
Nn5g28552 Nelumbo nucifera HOM05D003887 ORTHO05D004523 7.7e-44 180.6 130 64.6
PGR142G0321 Punica granatum HOM05D003887 ORTHO05D004523 7.7e-44 180.6 119 72.3
FAN05G1871 Fragaria x ananassa HOM05D003887 ORTHO05D004523 1.0e-43 180.3 123 69.9
QL02p078458 Quercus lobata HOM05D003887 ORTHO05D004523 1.3e-43 179.9 129 68.2
Prupe.7G091600 Prunus persica HOM05D003887 ORTHO05D004523 1.7e-43 179.5 124 69.4
QL07p027116 Quercus lobata HOM05D003887 ORTHO05D004523 1.7e-43 179.5 126 66.7
QL10p000363 Quercus lobata HOM05D003887 ORTHO05D004523 1.7e-43 179.5 129 68.2
FAN02G3629 Fragaria x ananassa HOM05D003887 ORTHO05D004523 2.3e-43 179.1 124 69.4
Hma1.2p1_0969F.1_g242620 Hydrangea macrophylla HOM05D003887 ORTHO05D004523 3.8e-43 178.3 120 69.2
GSVIVG01028462001 Vitis vinifera HOM05D003887 ORTHO05D004523 3.8e-43 178.3 119 70.6
FAN09G3131 Fragaria x ananassa HOM05D003887 ORTHO05D004523 8.6e-43 177.2 124 69.4
MD12G1043200 Malus domestica HOM05D003887 ORTHO05D004523 8.6e-43 177.2 124 68.5
RcHm_v2.0_Chr3g0476591 Rosa chinensis HOM05D003887 ORTHO05D004523 1.1e-42 176.8 124 68.5
ECA233G2913 Erigeron canadensis HOM05D003887 ORTHO05D004523 1.5e-42 176.4 119 67.2
MD14G1042300 Malus domestica HOM05D003887 ORTHO05D004523 1.5e-42 176.4 124 68.5
Sabra16G0068500 Salix brachista HOM05D003887 ORTHO05D004523 1.5e-42 176.4 124 69.4
Ciclev10013089m.g Citrus clementina HOM05D003887 ORTHO05D004523 1.9e-42 176.0 129 65.9
CANSAT64G2672 Cannabis sativa HOM05D003887 ORTHO05D004523 2.5e-42 175.6 125 66.4
Eucgr.G00614 Eucalyptus grandis HOM05D003887 ORTHO05D004523 2.5e-42 175.6 128 64.8
Gohir.D01G122500 Gossypium hirsutum HOM05D003887 ORTHO05D004523 2.5e-42 175.6 130 65.4
Thecc.05G108100 Theobroma cacao HOM05D003887 ORTHO05D004523 2.5e-42 175.6 119 70.6
Haze_20135 Corylus avellana HOM05D003887 ORTHO05D004523 3.3e-42 175.3 129 67.4
Sopen10g030440 Solanum pennellii HOM05D003887 ORTHO05D004523 3.3e-42 175.3 119 68.1
TAR265G0002 Trochodendron aralioides HOM05D003887 ORTHO05D004523 3.3e-42 175.3 124 68.5
Lj6g0002536 Lotus japonicus HOM05D003887 ORTHO05D004523 5.6e-42 174.5 124 66.9
Gorai.002G153400 Gossypium raimondii HOM05D003887 ORTHO05D004523 7.2e-42 174.1 119 68.9
Os09g0560500 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 7.2e-42 174.1 125 64.8
Atru.chr8.1305 Acer truncatum HOM05D003887 ORTHO05D004523 9.5e-42 173.7 129 67.4
Duzib128G1521 Durio zibethinus HOM05D003887 ORTHO05D004523 9.5e-42 173.7 129 67.4
Nn1g06263 Nelumbo nucifera HOM05D003887 ORTHO05D004523 9.5e-42 173.7 128 64.1
Gohir.A01G135300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 1.2e-41 173.3 130 63.8
TAR633G0863 Trochodendron aralioides HOM05D003887 ORTHO05D004523 2.1e-41 172.6 125 65.6
Solyc10g079830.3 Solanum lycopersicum HOM05D003887 ORTHO05D004523 2.8e-41 172.2 119 67.2
COL.COLO4_29521 Corchorus olitorius HOM05D003887 ORTHO05D004523 3.6e-41 171.8 119 68.9
Sc06g0008630 Simmondsia chinensis HOM05D003887 ORTHO05D004523 6.1e-41 171.0 126 64.3
Duzib106G1345 Durio zibethinus HOM05D003887 ORTHO05D004523 8.0e-41 170.6 119 68.9
Lj3C240T1 Lonicera japonica HOM05D003887 ORTHO05D004523 8.0e-41 170.6 127 63.0
Lj9C712T7 Lonicera japonica HOM05D003887 ORTHO05D004523 8.0e-41 170.6 123 65.0
Hund18807 Selenicereus undatus HOM05D003887 ORTHO05D004523 8.0e-41 170.6 124 65.3
PGSC0003DMG400029847 Solanum tuberosum HOM05D003887 ORTHO05D004523 8.0e-41 170.6 118 67.8
vmacro07505 Vaccinium macrocarpon HOM05D003887 ORTHO05D004523 1.0e-40 170.2 126 65.1
CSS0042801 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 1.4e-40 169.9 120 68.3
Lj6g0023596 Lotus japonicus HOM05D003887 ORTHO05D004523 1.4e-40 169.9 121 68.6
Aqoxy2G02430 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 1.8e-40 169.5 124 65.3
CAN.G1237.27 Capsicum annuum HOM05D003887 ORTHO05D004523 2.3e-40 169.1 118 65.3
Cc06_g06820 Coffea canephora HOM05D003887 ORTHO05D004523 2.3e-40 169.1 123 65.9
unitig_899.g14853 Utricularia gibba HOM05D003887 ORTHO05D004523 3.0e-40 168.7 119 66.4
Lsat_1_v5_gn_6_34741 Lactuca sativa HOM05D003887 ORTHO05D004523 4.0e-40 168.3 119 65.5
PSO513G0097 Papaver somniferum HOM05D003887 ORTHO05D004523 4.0e-40 168.3 128 62.5
Ah.08g222240 Amaranthus hybridus HOM05D003887 ORTHO05D004523 5.2e-40 167.9 123 65.9
HanXRQChr13g0398651 Helianthus annuus HOM05D003887 ORTHO05D004523 5.2e-40 167.9 110 69.1
MBI07_g23221_MAGBIO Magnolia biondii HOM05D003887 ORTHO05D004523 5.2e-40 167.9 118 66.9
PSO339G2059 Papaver somniferum HOM05D003887 ORTHO05D004523 8.9e-40 167.2 128 62.5
Aqoxy1G00605 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 1.2e-39 166.8 118 66.1
Cpa.g.sc104.4 Carica papaya HOM05D003887 ORTHO05D004523 1.5e-39 166.4 119 66.4
Cc06_g20890 Coffea canephora HOM05D003887 ORTHO05D004523 1.5e-39 166.4 123 64.2
Gohir.D04G154300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 1.5e-39 166.4 119 66.4
Gorai.012G141600 Gossypium raimondii HOM05D003887 ORTHO05D004523 1.5e-39 166.4 119 66.4
PSO339G1162 Papaver somniferum HOM05D003887 ORTHO05D004523 1.5e-39 166.4 129 61.2
MSTRG.10420 Avicennia marina HOM05D003887 ORTHO05D004523 2.0e-39 166.0 128 61.7
SHI28303 Sapria himalayana HOM05D003887 ORTHO05D004523 3.4e-39 165.2 127 60.6
CAN.G1656.10 Capsicum annuum HOM05D003887 ORTHO05D004523 5.7e-39 164.5 119 63.9
Nitab4.5_0008674g0010 Nicotiana tabacum HOM05D003887 ORTHO05D004523 7.5e-39 164.1 118 63.6
Zm00001eb039720 Zea mays HOM05D003887 ORTHO05D004523 7.5e-39 164.1 120 65.8
PSO782G0206 Papaver somniferum HOM05D003887 ORTHO05D004523 9.8e-39 163.7 129 59.7
Zm00001eb039830 Zea mays HOM05D003887 ORTHO05D004523 9.8e-39 163.7 120 65.8
DCAR_020685 Daucus carota HOM05D003887 ORTHO05D004523 1.3e-38 163.3 119 63.9
PSO513G0196 Papaver somniferum HOM05D003887 ORTHO05D004523 1.3e-38 163.3 126 59.5
MSTRG.26582 Avicennia marina HOM05D003887 ORTHO05D004523 1.7e-38 162.9 129 59.7
Glyma.19G201200 Glycine max HOM05D003887 ORTHO05D004523 1.7e-38 162.9 126 71.4
Sc06g0010620 Simmondsia chinensis HOM05D003887 ORTHO05D004523 1.7e-38 162.9 122 63.1
Gohir.A04G113000 Gossypium hirsutum HOM05D003887 ORTHO05D004523 2.2e-38 162.5 119 64.7
Os06g0154600 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 2.2e-38 162.5 125 61.6
Os08g0556200 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 2.9e-38 162.2 118 66.9
AL3G23320 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 4.9e-38 161.4 129 62.0
EL10Ac7g16270 Beta vulgaris HOM05D003887 ORTHO05D004523 8.3e-38 160.6 118 65.3
PSO210G2693 Papaver somniferum HOM05D003887 ORTHO05D004523 1.1e-37 160.2 128 58.6
Carub.0003s1109 Capsella rubella HOM05D003887 ORTHO05D004523 1.4e-37 159.8 125 64.0
Lj6g0002343 Lotus japonicus HOM05D003887 ORTHO05D004523 1.4e-37 159.8 126 62.7
Peaxi162Scf00130g01133 Petunia axillaris HOM05D003887 ORTHO05D004523 1.4e-37 159.8 118 61.0
BcaC09g48199 Brassica carinata HOM05D003887 ORTHO05D004523 1.8e-37 159.5 124 62.1
BolC1t05293H Brassica oleracea HOM05D003887 ORTHO05D004523 1.8e-37 159.5 124 62.1
BraA01t04162Z Brassica rapa HOM05D003887 ORTHO05D004523 1.8e-37 159.5 124 62.1
CDE02G3355 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 4.1e-37 158.3 124 60.5
Rhsim03G0059700 Rhododendron simsii HOM05D003887 ORTHO05D004523 1.2e-36 156.8 143 56.6
AT5G62980 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 1.6e-36 156.4 130 63.1
ATR0730G208 Amborella trichopoda HOM05D003887 ORTHO05D004523 2.0e-36 156.0 118 59.3
Thhalv10021697m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 2.0e-36 156.0 119 63.0
Aa31LG3G5210 Aethionema arabicum HOM05D003887 ORTHO05D004523 2.7e-36 155.6 130 60.0
AT3G11750 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 2.7e-36 155.6 120 62.5
BcaB04g21119 Brassica carinata HOM05D003887 ORTHO05D004523 2.7e-36 155.6 124 62.1
ATR0730G166 Amborella trichopoda HOM05D003887 ORTHO05D004523 4.6e-36 154.8 118 60.2
Migut.L01853 Erythranthe guttata HOM05D003887 ORTHO05D004523 4.6e-36 154.8 123 60.2
THA.LOC104826798 Tarenaya hassleriana HOM05D003887 ORTHO05D004523 4.6e-36 154.8 124 60.5
BcaB06g25586 Brassica carinata HOM05D003887 ORTHO05D004523 7.8e-36 154.1 124 60.5
AUR62020206 Chenopodium quinoa HOM05D003887 ORTHO05D004523 7.8e-36 154.1 122 63.1
CARHR276790 Cardamine hirsuta HOM05D003887 ORTHO05D004523 1.0e-35 153.7 126 61.1
HanXRQChr01g0028311 Helianthus annuus HOM05D003887 ORTHO05D004523 1.0e-35 153.7 110 65.5
Sp3g09980 Schrenkiella parvula HOM05D003887 ORTHO05D004523 1.0e-35 153.7 119 62.2
SGA_v2.0_scaffold392G50674 Striga asiatica HOM05D003887 ORTHO05D004523 1.0e-35 153.7 123 61.8
AL8G40010 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 1.3e-35 153.3 130 61.5
arahy.Tifrunner.gnm1.ann1.K0K91E Arachis hypogaea HOM05D003887 ORTHO05D004523 1.3e-35 153.3 127 63.0
AagrBONN_evm.TU.Sc2ySwM_117.2540 Anthoceros agrestis HOM05D003887 ORTHO05D004523 1.7e-35 152.9 123 59.3
BcaC05g29334 Brassica carinata HOM05D003887 ORTHO05D004523 1.7e-35 152.9 121 62.0
C05p56150 Brassica napus HOM05D003887 ORTHO05D004523 1.7e-35 152.9 121 62.0
SEGI_09372 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 1.7e-35 152.9 116 63.8
BraA05t22556Z Brassica rapa HOM05D003887 ORTHO05D004523 3.9e-35 151.8 121 62.0
BcaB02g09713 Brassica carinata HOM05D003887 ORTHO05D004523 5.0e-35 151.4 121 61.2
Carub.0008s2369 Capsella rubella HOM05D003887 ORTHO05D004523 1.1e-34 150.2 130 60.8
A05p37580 Brassica napus HOM05D003887 ORTHO05D004523 1.9e-34 149.4 121 61.2
Thhalv10005125m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 1.9e-34 149.4 120 60.0
A05p37590 Brassica napus HOM05D003887 ORTHO05D004523 4.3e-34 148.3 123 60.2
BraA05t22557Z Brassica rapa HOM05D003887 ORTHO05D004523 4.3e-34 148.3 123 60.2
SEGI_12007 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 4.3e-34 148.3 116 62.1
ClCG04G001280 Citrullus lanatus HOM05D003887 ORTHO05D004523 3.6e-33 145.2 118 56.8
MELO3C019050.2 Cucumis melo HOM05D003887 ORTHO05D004523 3.6e-33 145.2 119 58.0
Oeu020172.1 Olea europaea HOM05D003887 ORTHO05D004523 3.6e-33 145.2 123 57.7
CsaV3_4G004540 Cucumis sativus L. HOM05D003887 ORTHO05D004523 4.7e-33 144.8 118 55.9
Sed0005545 Sechium edule HOM05D003887 ORTHO05D004523 6.2e-33 144.4 118 55.1
Aa31LG3G5230 Aethionema arabicum HOM05D003887 ORTHO05D004523 1.8e-32 142.9 120 60.0
AUR62042906 Chenopodium quinoa HOM05D003887 ORTHO05D004523 1.2e-31 140.2 108 64.8
Gohir.A04G112940 Gossypium hirsutum HOM05D003887 ORTHO05D004523 2.6e-31 139.0 103 63.1
SMO351G0485 Selaginella moellendorffii HOM05D003887 ORTHO05D004523 2.6e-31 139.0 117 55.6
CDE09G0948 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 5.8e-31 137.9 111 60.4
SalBow7G3037 Salvia bowleyana HOM05D003887 ORTHO05D004523 5.8e-31 137.9 123 55.3
Nitab4.5_0000677g0080 Nicotiana tabacum HOM05D003887 ORTHO05D004523 7.5e-31 137.5 107 61.7
Actinidia03974 Actinidia chinensis HOM05D003887 ORTHO05D004523 2.9e-30 135.6 115 56.5
Pp3c1_42850 Physcomitrium patens HOM05D003887 ORTHO05D004523 1.1e-29 133.7 125 50.4
Actinidia03866 Actinidia chinensis HOM05D003887 ORTHO05D004523 2.4e-29 132.5 96 63.5
Mapoly0109s0052 Marchantia polymorpha HOM05D003887 ORTHO05D004523 7.8e-28 127.5 122 48.4
ECA232G3477 Erigeron canadensis HOM05D003887 ORTHO05D004523 1.0e-27 127.1 98 59.2
AL3G35860 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 1.3e-27 126.7 120 49.2
DCAR_009071 Daucus carota HOM05D003887 ORTHO05D004523 1.3e-27 126.7 129 53.5
HPP92_016697 Vanilla planifolia HOM05D003887 ORTHO05D004523 6.4e-22 107.8 79 63.3
Actinidia06188 Actinidia chinensis HOM05D003887 ORTHO05D004523 2.8e-17 92.4 61 67.2
arahy.Tifrunner.gnm1.ann1.T8NVRB Arachis hypogaea HOM05D003887 ORTHO05D004523 3.6e-17 92.0 68 69.1
arahy.Tifrunner.gnm1.ann1.3PGZ0K Arachis hypogaea HOM05D003887 ORTHO05D004523 4.7e-17 91.7 63 74.6
arahy.Tifrunner.gnm1.ann1.97GEQU Arachis hypogaea HOM05D003887 ORTHO05D004523 8.1e-17 90.9 63 74.6
CSS0033244 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 1.5e-15 86.7 64 65.6
Zm00001eb027530 Zea mays HOM05D011105 ORTHO05D007705 3.4e-15 85.5 55 67.3
Rhsim03G0060000 Rhododendron simsii HOM05D003887 ORTHO05D004523 7.6e-15 84.3 64 65.6
Rhsim03G0060200 Rhododendron simsii HOM05D003887 ORTHO05D004523 7.6e-15 84.3 64 65.6
Nitab4.5_0000936g0150 Nicotiana tabacum HOM05D003887 ORTHO05D004523 9.9e-15 84.0 82 56.1
Mapoly0003s0213 Marchantia polymorpha HOM05D003887 ORTHO05D004523 1.3e-14 83.6 128 35.9
PGSC0003DMG400007623 Solanum tuberosum HOM05D003887 ORTHO05D004523 2.2e-14 82.8 57 63.2
Cre02.g097450 Chlamydomonas reinhardtii HOM05D003887 ORTHO05D004523 3.7e-14 82.0 112 36.6
Mapoly0121s0041 Marchantia polymorpha HOM05D003887 ORTHO05D004523 6.4e-14 81.3 64 50.0
Gorai.006G076900 Gossypium raimondii HOM05D003887 ORTHO05D004523 3.5e-12 75.5 63 57.1
Gohir.D09G062150 Gossypium hirsutum HOM05D003887 ORTHO05D004523 6.0e-12 74.7 52 63.5
Actinidia37764 Actinidia chinensis HOM05D001091 ORTHO05D001020 7.3e-10 67.8 51 66.7
Lj3A241T19 Lonicera japonica HOM05D003887 ORTHO05D004523 1.2e-09 67.0 59 55.9
Aa31LG3G5240 Aethionema arabicum HOM05D003887 ORTHO05D004523 5.2e-08 61.6 67 49.3
AT3G21730 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 7.6e-07 57.8 64 42.2
HanXRQChr02g0053341 Helianthus annuus HOM05D003887 ORTHO05D048295 6.4e-06 54.7 35 62.9


User provided reference genes

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