Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g004520 Pisum sativum HOM05D004463 ORTHO05D004724 1.2e-92 343.6 232 100.0
Psat5g004400 Pisum sativum HOM05D004463 ORTHO05D004724 7.8e-60 234.6 227 80.6
Ca_15338_v3 Cicer arietinum L. HOM05D004463 ORTHO05D004724 3.5e-36 156.0 259 59.8
Glyma.04G008700 Glycine max HOM05D004463 ORTHO05D004724 2.8e-33 146.4 263 57.4
arahy.Tifrunner.gnm1.ann1.0JY1T4 Arachis hypogaea HOM05D004463 ORTHO05D004724 5.3e-32 142.1 265 57.7
arahy.Tifrunner.gnm1.ann1.2L6AT5 Arachis hypogaea HOM05D004463 ORTHO05D004724 5.3e-32 142.1 265 57.7
Sed0022229 Sechium edule HOM05D004463 ORTHO05D004724 4.5e-31 139.0 251 57.0
ClCG02G004610 Citrullus lanatus HOM05D004463 ORTHO05D004724 1.7e-30 137.1 267 56.6
MELO3C013423.2 Cucumis melo HOM05D004463 ORTHO05D004724 2.9e-30 136.3 267 56.6
CsaV3_7G000350 Cucumis sativus L. HOM05D004463 ORTHO05D004724 6.5e-30 135.2 267 56.2
QL11p046341 Quercus lobata HOM05D004463 ORTHO05D004724 3.2e-29 132.9 255 56.5
TWI31G1301 Tripterygium wilfordii HOM05D004463 ORTHO05D004724 9.3e-29 131.3 266 56.4
Prupe.8G085500 Prunus persica HOM05D004463 ORTHO05D004724 1.6e-28 130.6 240 59.6
VMungo1309G0843 Vigna mungo HOM05D000018 ORTHO05D001040 7.9e-28 128.3 257 54.9
Glyma.06G008500 Glycine max HOM05D004463 ORTHO05D004724 1.0e-27 127.9 266 54.9
Phvul.009G003600 Phaseolus vulgaris HOM05D004463 ORTHO05D004724 1.0e-27 127.9 269 55.0
PGR042G1049 Punica granatum HOM05D004463 ORTHO05D004724 1.0e-27 127.9 265 55.8
Lj1g0018700 Lotus japonicus HOM05D004463 ORTHO05D004724 3.0e-27 126.3 267 55.4
TPR.G32219 Trifolium pratense HOM05D004463 ORTHO05D004724 3.0e-27 126.3 276 53.6
MD00G1040200 Malus domestica HOM05D004463 ORTHO05D004724 5.1e-27 125.6 267 55.8
Atru.chr5.3137 Acer truncatum HOM05D004463 ORTHO05D004724 8.7e-27 124.8 255 56.9
Gorai.005G248300 Gossypium raimondii HOM05D004463 ORTHO05D004724 2.5e-26 123.2 279 42.3
RcHm_v2.0_Chr6g0267601 Rosa chinensis HOM05D004463 ORTHO05D004724 9.7e-26 121.3 269 52.8
Lalb_Chr23g0265191 Lupinus albus HOM05D004463 ORTHO05D004724 2.8e-25 119.8 267 54.3
Potri.004G161800 Populus trichocarpa HOM05D004463 ORTHO05D004724 3.7e-25 119.4 257 52.1
Duzib248G1389 Durio zibethinus HOM05D004463 ORTHO05D004724 8.2e-25 118.2 267 53.6
Gohir.A03G199000 Gossypium hirsutum HOM05D004463 ORTHO05D004724 1.1e-24 117.9 262 53.4
Cpa.g.sc150.22 Carica papaya HOM05D004463 ORTHO05D004724 1.8e-24 117.1 257 55.6
COL.COLO4_26036 Corchorus olitorius HOM05D004463 ORTHO05D004724 4.1e-24 115.9 268 54.9
MD10G1063900 Malus domestica HOM05D004463 ORTHO05D004724 6.9e-24 115.2 267 53.2
CANSAT11G2458 Cannabis sativa HOM05D004463 ORTHO05D004724 9.0e-24 114.8 268 54.1
CiPaw.06G128800 Carya illinoinensis HOM05D004463 ORTHO05D004724 5.9e-23 112.1 63 88.9
Gohir.D02G220400 Gossypium hirsutum HOM05D004463 ORTHO05D004724 7.6e-23 111.7 263 51.7
Ciclev10029089m.g Citrus clementina HOM05D004463 ORTHO05D004724 3.8e-22 109.4 268 52.6
CiPaw.14G035900 Carya illinoinensis HOM05D004463 ORTHO05D004724 6.5e-22 108.6 253 52.6
CiPaw.13G045000 Carya illinoinensis HOM05D004463 ORTHO05D004724 9.4e-21 104.8 251 51.8
TPR.G32170 Trifolium pratense HOM05D004463 ORTHO05D004724 1.6e-20 104.0 65 84.6
Dinv23459 Davidia involucrata HOM05D004463 ORTHO05D004724 2.1e-20 103.6 63 81.0
ECA232G1454 Erigeron canadensis HOM05D004463 ORTHO05D004724 2.7e-20 103.2 60 83.3
Eucgr.I01324 Eucalyptus grandis HOM05D004463 ORTHO05D004724 1.0e-19 101.3 261 50.6
HPP92_007058 Vanilla planifolia HOM05D004463 ORTHO05D004724 6.7e-19 98.6 226 39.8
Dinv42004 Davidia involucrata HOM05D004463 ORTHO05D004724 8.8e-19 98.2 63 79.4
GSVIVG01024180001 Vitis vinifera HOM05D004463 ORTHO05D004724 1.1e-18 97.8 59 83.1
Sabra04G0108800 Salix brachista HOM05D004463 ORTHO05D004724 1.5e-18 97.4 237 48.9
Dinv39485 Davidia involucrata HOM05D004463 ORTHO05D004724 2.5e-18 96.7 181 54.1
Peaxi162Scf00538g00125 Petunia axillaris HOM05D004463 ORTHO05D004724 2.5e-18 96.7 237 37.6
Manes.15G189900 Manihot esculenta HOM05D004463 ORTHO05D004724 1.7e-17 94.0 253 49.0
Sed0016215 Sechium edule HOM05D004463 ORTHO05D004724 4.8e-17 92.4 67 76.1
TWI75G1243 Tripterygium wilfordii HOM05D004463 ORTHO05D004724 6.3e-17 92.0 247 47.0
Actinidia27858 Actinidia chinensis HOM05D000578 ORTHO05D000422 1.1e-16 91.3 63 76.2
Thecc.02G075900 Theobroma cacao HOM05D004463 ORTHO05D004724 1.1e-16 91.3 65 73.8
Duzib052G0336 Durio zibethinus HOM05D004463 ORTHO05D004724 1.8e-16 90.5 59 76.3
Actinidia00571 Actinidia chinensis HOM05D004463 ORTHO05D004724 3.1e-16 89.7 57 78.9
CAN.G95.2 Capsicum annuum HOM05D004463 ORTHO05D004724 4.1e-16 89.4 261 46.4
FAN20G1990 Fragaria x ananassa HOM05D004463 ORTHO05D004724 9.1e-16 88.2 69 69.6
FAN27G0878 Fragaria x ananassa HOM05D004463 ORTHO05D004724 9.1e-16 88.2 69 69.6
HanXRQChr05g0143421 Helianthus annuus HOM05D004463 ORTHO05D004724 9.1e-16 88.2 67 68.7
Manes.17G001400 Manihot esculenta HOM05D004463 ORTHO05D004724 9.1e-16 88.2 67 71.6
Manes.05G152600 Manihot esculenta HOM05D004463 ORTHO05D004724 1.2e-15 87.8 67 68.7
Haze_03437 Corylus avellana HOM05D004463 ORTHO05D004724 1.5e-15 87.4 224 54.0
FvH4_2g10323 Fragaria vesca HOM05D004463 ORTHO05D004724 1.5e-15 87.4 71 67.6
FAN15G3389 Fragaria x ananassa HOM05D004463 ORTHO05D004724 2.0e-15 87.0 72 66.7
Sc25g0002840 Simmondsia chinensis HOM05D004463 ORTHO05D004724 2.0e-15 87.0 221 40.7
A06p48750 Brassica napus HOM05D004463 ORTHO05D004724 3.4e-15 86.3 54 74.1
C07p63410 Brassica napus HOM05D004463 ORTHO05D004724 3.4e-15 86.3 54 74.1
BolC7t46753H Brassica oleracea HOM05D004463 ORTHO05D004724 3.4e-15 86.3 54 74.1
FAN24G1814 Fragaria x ananassa HOM05D004463 ORTHO05D004724 5.9e-15 85.5 76 63.2
Hund00218 Selenicereus undatus HOM05D004463 ORTHO05D004724 1.3e-14 84.3 233 45.9
GSVIVG01009823001 Vitis vinifera HOM05D004463 ORTHO05D004724 1.3e-14 84.3 50 76.0
Zm00001eb393940 Zea mays HOM05D004463 ORTHO05D004724 1.3e-14 84.3 258 42.6
Hma1.2p1_0067F.1_g037090 Hydrangea macrophylla HOM05D004463 ORTHO05D004724 1.7e-14 84.0 182 50.5
Nitab4.5_0001317g0040 Nicotiana tabacum HOM05D004463 ORTHO05D004724 1.7e-14 84.0 51 74.5
Hund26868 Selenicereus undatus HOM05D004463 ORTHO05D004724 1.7e-14 84.0 50 74.0
Oeu046135.1 Olea europaea HOM05D004463 ORTHO05D004724 2.2e-14 83.6 47 76.6
Oeu036635.1 Olea europaea HOM05D004463 ORTHO05D004724 2.9e-14 83.2 69 62.3
DCAR_022913 Daucus carota HOM05D004463 ORTHO05D004724 5.0e-14 82.4 67 64.2
THA.LOC104807766 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 5.0e-14 82.4 267 49.1
Rhsim11G0183400 Rhododendron simsii HOM05D000078 ORTHO05D004724 6.5e-14 82.0 58 72.4
BraA06t27741Z Brassica rapa HOM05D004463 ORTHO05D004724 8.5e-14 81.6 55 72.7
Cc02_g16980 Coffea canephora HOM05D004463 ORTHO05D004724 8.5e-14 81.6 64 67.2
THA.LOC104804116 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 1.4e-13 80.9 62 71.0
Solyc10g054330.3 Solanum lycopersicum HOM05D004463 ORTHO05D004724 3.2e-13 79.7 53 71.7
Sopen10g024240 Solanum pennellii HOM05D004463 ORTHO05D004724 4.2e-13 79.3 54 70.4
PGSC0003DMG400026665 Solanum tuberosum HOM05D004463 ORTHO05D004724 4.2e-13 79.3 54 70.4
Oeu055628.1 Olea europaea HOM05D004463 ORTHO05D004724 5.5e-13 79.0 73 57.5
THA.LOC104813804 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 5.5e-13 79.0 64 64.1
Atru.chr13.360 Acer truncatum HOM05D004463 ORTHO05D004724 7.2e-13 78.6 50 72.0
CARHR247750 Cardamine hirsuta HOM05D004463 ORTHO05D004724 1.2e-12 77.8 55 63.6
Os10g0545300 Oryza sativa ssp. japonica HOM05D004463 ORTHO05D004724 1.2e-12 77.8 57 68.4
HPP92_007060 Vanilla planifolia HOM05D004463 ORTHO05D004724 1.2e-12 77.8 63 68.3
Migut.B00180 Erythranthe guttata HOM05D004463 ORTHO05D004724 2.1e-12 77.0 50 72.0
Rhsim05G0068600 Rhododendron simsii HOM05D004463 ORTHO05D004724 1.0e-11 74.7 76 59.2
A07p41130 Brassica napus HOM05D004463 ORTHO05D004724 1.8e-11 73.9 71 59.2
Lsat_1_v5_gn_8_16561 Lactuca sativa HOM05D004463 ORTHO05D004724 1.8e-11 73.9 61 65.6
Hma1.2p1_0066F.1_g035800 Hydrangea macrophylla HOM05D004463 ORTHO05D004724 2.3e-11 73.6 71 59.2
Potri.005G234700 Populus trichocarpa HOM05D004463 ORTHO05D004724 2.3e-11 73.6 79 55.7
Thecc.08G037600 Theobroma cacao HOM05D004463 ORTHO05D004724 3.0e-11 73.2 51 66.7
AUR62014431 Chenopodium quinoa HOM05D004463 ORTHO05D004724 3.9e-11 72.8 44 70.5
PSO339G5998 Papaver somniferum HOM05D004463 ORTHO05D004724 3.9e-11 72.8 62 59.7
TAR369G0673 Trochodendron aralioides HOM05D004463 ORTHO05D004724 3.9e-11 72.8 51 68.6
Nn5g29212 Nelumbo nucifera HOM05D004463 ORTHO05D004724 8.8e-11 71.6 65 80.0
PSO648G0094 Papaver somniferum HOM05D004463 ORTHO05D004724 8.8e-11 71.6 63 61.9
C06p49550 Brassica napus HOM05D004463 ORTHO05D004724 3.3e-10 69.7 52 61.5
BolC6t39994H Brassica oleracea HOM05D004463 ORTHO05D004724 3.3e-10 69.7 52 61.5
Ciclev10002195m.g Citrus clementina HOM05D004463 ORTHO05D004724 3.3e-10 69.7 50 64.0
ECA233G0628 Erigeron canadensis HOM05D001446 ORTHO05D001360 5.7e-10 68.9 58 58.6
Gohir.D10G224732 Gossypium hirsutum HOM05D004463 ORTHO05D004724 5.7e-10 68.9 136 36.0
Sabra05G0180900 Salix brachista HOM05D004463 ORTHO05D004724 5.7e-10 68.9 56 58.9
THA.LOC104809337 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 9.7e-10 68.2 50 62.0
TWI36G1578 Tripterygium wilfordii HOM05D004463 ORTHO05D004724 9.7e-10 68.2 51 62.7
AL2G35540 Arabidopsis lyrata HOM05D004463 ORTHO05D004724 1.3e-09 67.8 49 61.2
Carub.0002s2242 Capsella rubella HOM05D004463 ORTHO05D004724 1.3e-09 67.8 49 61.2
AL7G10930 Arabidopsis lyrata HOM05D004463 ORTHO05D004724 1.7e-09 67.4 64 57.8
Nitab4.5_0001370g0080 Nicotiana tabacum HOM05D004463 ORTHO05D004724 1.7e-09 67.4 233 29.2
SGA_v2.0_scaffold326G48748 Striga asiatica HOM05D004463 ORTHO05D004724 1.7e-09 67.4 51 60.8
SEGI_31170 Sequoiadendron giganteum HOM05D004463 ORTHO05D004724 3.7e-09 66.2 65 60.0
PSO339G4128 Papaver somniferum HOM05D004463 ORTHO05D004724 4.8e-09 65.9 58 60.3
PSO384G1624 Papaver somniferum HOM05D004463 ORTHO05D004724 4.8e-09 65.9 58 60.3
Thhalv10019006m.g Eutrema salsugineum HOM05D004463 ORTHO05D004724 6.3e-09 65.5 47 66.0
TAR636G2492 Trochodendron aralioides HOM05D004463 ORTHO05D004724 6.3e-09 65.5 63 61.9
CDE02G2851 Ceratophyllum demersum HOM05D003292 ORTHO05D004237 8.2e-09 65.1 191 52.9
Lj9P382T32 Lonicera japonica HOM05D004463 ORTHO05D004724 8.2e-09 65.1 58 77.6
Aa31LG4G5800 Aethionema arabicum HOM05D004463 ORTHO05D004724 1.4e-08 64.3 52 57.7
Aqoxy4G02979 Aquilegia oxysepala HOM05D004463 ORTHO05D004724 1.4e-08 64.3 67 56.7
Zm00001eb022680 Zea mays HOM05D004463 ORTHO05D004724 1.8e-08 63.9 267 44.9
AUR62034566 Chenopodium quinoa HOM05D004463 ORTHO05D004724 2.4e-08 63.5 58 53.4
COL.COLO4_14964 Corchorus olitorius HOM05D004463 ORTHO05D004724 2.4e-08 63.5 59 59.3
AT1G75560 Arabidopsis thaliana HOM05D004463 ORTHO05D004724 3.1e-08 63.2 51 58.8
Sp5g30690 Schrenkiella parvula HOM05D004463 ORTHO05D004724 4.1e-08 62.8 47 63.8
Rhsim09G0164600 Rhododendron simsii HOM05D004463 ORTHO05D004724 9.1e-08 61.6 63 55.6
Lj8C86T7 Lonicera japonica HOM05D004463 ORTHO05D004724 1.5e-07 60.8 63 58.7
QL08p059074 Quercus lobata HOM05D004463 ORTHO05D004724 2.6e-07 60.1 56 58.9
CSS0035906 Camellia sinensis var. sinensis HOM05D004463 ORTHO05D004724 3.4e-07 59.7 58 56.9
Hma1.2p1_0727F.1_g209210 Hydrangea macrophylla HOM05D004463 ORTHO05D004724 3.4e-07 59.7 63 55.6
GSVIVG01011366001 Vitis vinifera HOM05D002216 ORTHO05D002011 3.4e-07 59.7 56 57.1
GSVIVG01016581001 Vitis vinifera HOM05D004463 ORTHO05D004724 3.4e-07 59.7 56 58.9
Nn6g32238 Nelumbo nucifera HOM05D004463 ORTHO05D004724 4.5e-07 59.3 39 76.9
Peaxi162Scf00684g00132 Petunia axillaris HOM05D004463 ORTHO05D004724 1.0e-06 58.2 209 31.1
Thecc.10G047100 Theobroma cacao HOM05D004463 ORTHO05D004724 1.0e-06 58.2 59 55.9
Manes.10G032800 Manihot esculenta HOM05D004463 ORTHO05D004724 1.3e-06 57.8 57 54.4
Dinv25993 Davidia involucrata HOM05D004463 ORTHO05D004724 1.7e-06 57.4 58 55.2
Duzib106G1221 Durio zibethinus HOM05D004463 ORTHO05D004724 3.8e-06 56.2 59 55.9
Prupe.2G231800 Prunus persica HOM05D004463 ORTHO05D004724 6.5e-06 55.5 59 52.5
Ah.08g211810 Amaranthus hybridus HOM05D031029 ORTHO05D004724 8.5e-06 55.1 54 59.3
Cfa001504 Carpinus fangiana HOM05D001680 ORTHO05D001596 8.5e-06 55.1 63 55.6
Haze_17039 Corylus avellana HOM05D001446 ORTHO05D001360 8.5e-06 55.1 63 55.6


User provided reference genes

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