Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g003360 Pisum sativum HOM05D005021 ORTHO05D006824 1.6e-48 195.7 91 100.0
Psat7g129680 Pisum sativum HOM05D005021 ORTHO05D006824 3.5e-32 141.4 89 76.4
TPR.G38288 Trifolium pratense HOM05D005021 ORTHO05D006824 2.5e-30 135.2 89 73.0
Medtr4g084140 Medicago truncatula HOM05D005021 ORTHO05D006824 3.3e-30 134.8 91 72.5
Ca_18756_v3 Cicer arietinum L. HOM05D005021 ORTHO05D006824 1.8e-28 129.0 87 71.3
arahy.Tifrunner.gnm1.ann1.59QZXR Arachis hypogaea HOM05D005021 ORTHO05D006824 1.5e-27 125.9 89 68.5
VMungo0251G3115 Vigna mungo HOM05D005021 ORTHO05D006824 1.5e-27 125.9 88 68.2
Glyma.20G019300 Glycine max HOM05D005021 ORTHO05D006824 2.6e-27 125.2 89 66.3
Phvul.002G097500 Phaseolus vulgaris HOM05D005021 ORTHO05D006824 2.6e-27 125.2 88 68.2
arahy.Tifrunner.gnm1.ann1.79RC6W Arachis hypogaea HOM05D005021 ORTHO05D006824 7.6e-27 123.6 89 67.4
Lj4g0005220 Lotus japonicus HOM05D005021 ORTHO05D006824 8.4e-26 120.2 88 68.2
Lalb_Chr16g0385181 Lupinus albus HOM05D005021 ORTHO05D006824 3.3e-22 108.2 87 59.8
RcHm_v2.0_Chr5g0020301 Rosa chinensis HOM05D005021 ORTHO05D006824 4.1e-20 101.3 89 57.3
GSVIVG01012103001 Vitis vinifera HOM05D005021 ORTHO05D006824 5.3e-20 100.9 89 53.9
TAR626G1325 Trochodendron aralioides HOM05D005021 ORTHO05D006824 6.9e-20 100.5 89 53.9
Cfa000703 Carpinus fangiana HOM05D005021 ORTHO05D006824 9.0e-20 100.1 89 56.2
MD05G1250500 Malus domestica HOM05D005021 ORTHO05D006824 9.0e-20 100.1 89 55.1
Haze_06074 Corylus avellana HOM05D005021 ORTHO05D006824 1.2e-19 99.8 89 56.2
MD10G1231300 Malus domestica HOM05D005021 ORTHO05D006824 1.5e-19 99.4 89 55.1
Prupe.4G113100 Prunus persica HOM05D005021 ORTHO05D006824 2.0e-19 99.0 89 55.1
Eucgr.D00052 Eucalyptus grandis HOM05D005021 ORTHO05D006824 2.6e-19 98.6 89 51.7
Lj1A1146G59 Lonicera japonica HOM05D005021 ORTHO05D006824 2.6e-19 98.6 89 53.9
Nn7g38248 Nelumbo nucifera HOM05D005021 ORTHO05D006824 4.5e-19 97.8 89 56.2
Potri.012G124400 Populus trichocarpa HOM05D005021 ORTHO05D006824 4.5e-19 97.8 90 55.6
vmacro03526 Vaccinium macrocarpon HOM05D005021 ORTHO05D006824 5.9e-19 97.4 89 55.1
Thecc.02G008800 Theobroma cacao HOM05D005021 ORTHO05D006824 7.6e-19 97.1 89 55.1
Ciclev10014047m.g Citrus clementina HOM05D005021 ORTHO05D006824 1.0e-18 96.7 89 53.9
Cpa.g.sc30.159 Carica papaya HOM05D005021 ORTHO05D006824 1.3e-18 96.3 88 56.8
Atru.chr10.559 Acer truncatum HOM05D005021 ORTHO05D006824 2.2e-18 95.5 89 52.8
Dinv25918 Davidia involucrata HOM05D005021 ORTHO05D006824 3.8e-18 94.7 89 51.7
CSS0004737 Camellia sinensis var. sinensis HOM05D005021 ORTHO05D006824 8.5e-18 93.6 89 51.7
COL.COLO4_17653 Corchorus olitorius HOM05D005021 ORTHO05D006824 8.5e-18 93.6 89 52.8
FvH4_3g12410 Fragaria vesca HOM05D005021 ORTHO05D006824 8.5e-18 93.6 89 55.1
FAN16G3288 Fragaria x ananassa HOM05D005021 ORTHO05D006824 8.5e-18 93.6 89 55.1
QL11p016313 Quercus lobata HOM05D005021 ORTHO05D006824 8.5e-18 93.6 89 53.9
TWI38G0776 Tripterygium wilfordii HOM05D005021 ORTHO05D006824 8.5e-18 93.6 89 52.8
Aqoxy1G01424 Aquilegia oxysepala HOM05D005021 ORTHO05D006824 1.1e-17 93.2 89 50.6
FAN21G1452 Fragaria x ananassa HOM05D005021 ORTHO05D006824 1.1e-17 93.2 89 55.1
Sabra12G0094200 Salix brachista HOM05D005021 ORTHO05D006824 1.1e-17 93.2 90 52.2
Sp4g17340 Schrenkiella parvula HOM05D005021 ORTHO05D006824 1.1e-17 93.2 89 50.6
BcaB02g09478 Brassica carinata HOM05D005021 ORTHO05D006824 2.5e-17 92.0 89 51.7
BcaB02g09480 Brassica carinata HOM05D005021 ORTHO05D006824 2.5e-17 92.0 89 50.6
C04p13730 Brassica napus HOM05D005021 ORTHO05D006824 2.5e-17 92.0 89 51.7
Gohir.D01G132500 Gossypium hirsutum HOM05D005021 ORTHO05D006824 2.5e-17 92.0 89 51.7
Gorai.002G164100 Gossypium raimondii HOM05D005021 ORTHO05D006824 2.5e-17 92.0 89 51.7
THA.LOC104798554 Tarenaya hassleriana HOM05D005021 ORTHO05D006824 2.5e-17 92.0 89 49.4
A05p10630 Brassica napus HOM05D005021 ORTHO05D006824 3.2e-17 91.7 89 50.6
CiPaw.10G064100 Carya illinoinensis HOM05D005021 ORTHO05D006824 3.2e-17 91.7 87 52.9
BraA05t20004Z Brassica rapa HOM05D005021 ORTHO05D006824 4.2e-17 91.3 89 50.6
Thhalv10016146m.g Eutrema salsugineum HOM05D005021 ORTHO05D006824 4.2e-17 91.3 89 49.4
Gohir.A01G141263 Gossypium hirsutum HOM05D005021 ORTHO05D006824 4.2e-17 91.3 89 51.7
Solyc02g068720.3 Solanum lycopersicum HOM05D005021 ORTHO05D006824 4.2e-17 91.3 89 50.6
CANSAT35G0082 Cannabis sativa HOM05D005021 ORTHO05D006824 5.5e-17 90.9 89 50.6
BolC4t22962H Brassica oleracea HOM05D005021 ORTHO05D006824 9.3e-17 90.1 89 50.6
TWI38G0923 Tripterygium wilfordii HOM05D005021 ORTHO05D006824 9.3e-17 90.1 89 50.6
FAN25G1951 Fragaria x ananassa HOM05D005021 ORTHO05D006824 1.6e-16 89.4 89 52.8
Sopen02g017890 Solanum pennellii HOM05D005021 ORTHO05D006824 1.6e-16 89.4 89 49.4
Duzib248G0067 Durio zibethinus HOM05D005021 ORTHO05D006824 4.6e-16 87.8 89 49.4
Oeu060352.1 Olea europaea HOM05D005021 ORTHO05D006824 7.9e-16 87.0 89 46.1
Oeu060353.1 Olea europaea HOM05D005021 ORTHO05D006824 7.9e-16 87.0 89 46.1
RhsimUnG0043400 Rhododendron simsii HOM05D005021 ORTHO05D006824 7.9e-16 87.0 87 51.7
AL4G31120 Arabidopsis lyrata HOM05D005021 ORTHO05D006824 1.0e-15 86.7 89 47.2
Carub.0004s1679 Capsella rubella HOM05D005021 ORTHO05D006824 1.4e-15 86.3 93 48.4
Potri.015G124500 Populus trichocarpa HOM05D005021 ORTHO05D006824 1.8e-15 85.9 90 51.1
Migut.M01986 Erythranthe guttata HOM05D005021 ORTHO05D006824 2.3e-15 85.5 89 47.2
Hma1.2p1_1005F.1_g246940 Hydrangea macrophylla HOM05D005021 ORTHO05D006824 2.3e-15 85.5 87 50.6
SalBow8G3018 Salvia bowleyana HOM05D005021 ORTHO05D006824 2.3e-15 85.5 89 46.1
MELO3C021737.2 Cucumis melo HOM05D005021 ORTHO05D006824 5.1e-15 84.3 87 48.3
CsaV3_1G046230 Cucumis sativus L. HOM05D005021 ORTHO05D006824 5.1e-15 84.3 87 48.3
ECA238G3003 Erigeron canadensis HOM05D005021 ORTHO05D006824 5.1e-15 84.3 87 47.1
Nitab4.5_0007745g0040 Nicotiana tabacum HOM05D005021 ORTHO05D006824 5.1e-15 84.3 89 48.3
AT2G35110 Arabidopsis thaliana HOM05D005021 ORTHO05D006824 6.7e-15 84.0 89 48.3
Nitab4.5_0001288g0150 Nicotiana tabacum HOM05D005021 ORTHO05D006824 6.7e-15 84.0 89 48.3
ClCG01G009560 Citrullus lanatus HOM05D005021 ORTHO05D006824 8.8e-15 83.6 87 49.4
HanXRQChr14g0447451 Helianthus annuus HOM05D005021 ORTHO05D006824 1.1e-14 83.2 87 46.0
DCAR_003775 Daucus carota HOM05D005021 ORTHO05D006824 1.9e-14 82.4 89 44.9
SGA_v2.0_scaffold175G39355 Striga asiatica HOM05D005021 ORTHO05D006824 1.9e-14 82.4 89 47.2
Aa31LG9G16120 Aethionema arabicum HOM05D005021 ORTHO05D006824 7.4e-14 80.5 89 44.9
Sed0001856 Sechium edule HOM05D005021 ORTHO05D006824 9.7e-14 80.1 84 48.8
Cc09_g06010 Coffea canephora HOM05D005021 ORTHO05D006824 9.1e-12 73.6 87 47.1
CDE05G3601 Ceratophyllum demersum HOM05D005021 ORTHO05D006824 1.5e-11 72.8 87 44.8
PSO675G8902 Papaver somniferum HOM05D005021 ORTHO05D006824 1.5e-11 72.8 89 43.8
AUR62041742 Chenopodium quinoa HOM05D005021 ORTHO05D006824 4.5e-11 71.2 75 53.3
Sc17g0003700 Simmondsia chinensis HOM05D005021 ORTHO05D006824 1.7e-10 69.3 69 50.7
EL10Ac9g20953 Beta vulgaris HOM05D005021 ORTHO05D006824 5.0e-10 67.8 61 54.1
AUR62037395 Chenopodium quinoa HOM05D005021 ORTHO05D006824 5.0e-10 67.8 74 47.3
Ah.01g015830 Amaranthus hybridus HOM05D005021 ORTHO05D006824 1.1e-09 66.6 73 47.9
CAN.G149.8 Capsicum annuum HOM05D005021 ORTHO05D006824 1.1e-09 66.6 89 41.6
Os08g0544500 Oryza sativa ssp. japonica HOM05D005021 ORTHO05D006824 1.1e-09 66.6 87 43.7
HPP92_017178 Vanilla planifolia HOM05D005021 ORTHO05D006824 5.5e-09 64.3 87 42.5
SEGI_41047 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 7.2e-09 63.9 90 46.7
Hund09140 Selenicereus undatus HOM05D005021 ORTHO05D006824 1.2e-08 63.2 73 46.6
SHI31491 Sapria himalayana HOM05D005021 ORTHO05D006824 3.6e-08 61.6 87 41.4
Zm00001eb405230 Zea mays HOM05D005021 ORTHO05D006824 3.6e-08 61.6 86 43.0
ATR0752G031 Amborella trichopoda HOM05D005021 ORTHO05D006824 1.8e-07 59.3 86 39.5
unitig_748.g8077 Utricularia gibba HOM05D005021 ORTHO05D006824 1.8e-07 59.3 42 57.1
PGR004G0612 Punica granatum HOM05D005021 ORTHO05D006824 5.1e-07 57.8 94 43.6


User provided reference genes

Program Settings