Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g003040 Pisum sativum HOM05D006293 ORTHO05D007971 6.0e-162 574.3 334 100.0
Medtr3g117760 Medicago truncatula HOM05D006293 ORTHO05D007971 9.6e-136 487.3 334 75.4
TPR.G38570 Trifolium pratense HOM05D006293 ORTHO05D007971 2.6e-133 479.2 334 80.2
Ca_15314_v3 Cicer arietinum L. HOM05D006293 ORTHO05D007971 4.3e-128 461.8 334 73.4
Glyma.04G005100 Glycine max HOM05D006293 ORTHO05D007971 3.7e-127 458.8 338 79.3
Glyma.06G004900 Glycine max HOM05D006293 ORTHO05D007971 1.7e-124 449.9 334 73.1
VMungo1309G1166 Vigna mungo HOM05D006293 ORTHO05D007971 8.8e-121 437.6 332 72.3
Phvul.009G025500 Phaseolus vulgaris HOM05D006293 ORTHO05D007971 3.3e-120 435.6 334 73.1
Lj1g0023631 Lotus japonicus HOM05D006293 ORTHO05D007971 2.2e-116 422.9 332 75.6
Lalb_Chr23g0265081 Lupinus albus HOM05D006293 ORTHO05D007971 1.1e-112 410.6 335 72.5
QL11p047722 Quercus lobata HOM05D006293 ORTHO05D007971 4.4e-104 382.1 334 69.5
Haze_02189 Corylus avellana HOM05D006293 ORTHO05D007971 9.1e-102 374.4 334 65.0
GSVIVG01024071001 Vitis vinifera HOM05D006293 ORTHO05D007971 1.2e-101 374.0 334 63.2
Dinv04963 Davidia involucrata HOM05D006293 ORTHO05D007971 1.6e-101 373.6 337 65.0
Cfa005191 Carpinus fangiana HOM05D006293 ORTHO05D007971 6.5e-100 368.2 339 61.4
Prupe.8G161400 Prunus persica HOM05D006293 ORTHO05D007971 1.8e-97 360.1 331 63.7
TAR376G0811 Trochodendron aralioides HOM05D006293 ORTHO05D007971 1.5e-96 357.1 331 56.2
CiPaw.05G077900 Carya illinoinensis HOM05D006293 ORTHO05D007971 1.3e-95 354.0 308 63.0
Potri.004G169200 Populus trichocarpa HOM05D006293 ORTHO05D007971 1.3e-95 354.0 336 65.8
FAN15G0431 Fragaria x ananassa HOM05D006293 ORTHO05D007971 1.7e-95 353.6 341 63.3
Rhsim11G0188600 Rhododendron simsii HOM05D006293 ORTHO05D007971 1.7e-95 353.6 343 62.7
CANSAT25G1913 Cannabis sativa HOM05D006293 ORTHO05D007971 2.8e-95 352.8 349 64.5
CSS0030950 Camellia sinensis var. sinensis HOM05D006293 ORTHO05D007971 3.7e-95 352.4 333 65.8
Eucgr.G01761 Eucalyptus grandis HOM05D006293 ORTHO05D007971 3.7e-95 352.4 329 64.7
Thecc.02G066200 Theobroma cacao HOM05D006293 ORTHO05D007971 6.3e-95 351.7 336 63.4
Cpa.g.sc37.182 Carica papaya HOM05D006293 ORTHO05D007971 2.4e-94 349.7 329 64.4
COL.COLO4_17266 Corchorus olitorius HOM05D006293 ORTHO05D007971 3.1e-94 349.4 334 60.5
RcHm_v2.0_Chr6g0244771 Rosa chinensis HOM05D006293 ORTHO05D007971 4.1e-94 349.0 348 64.7
Gohir.D01G156200 Gossypium hirsutum HOM05D006293 ORTHO05D007971 5.4e-94 348.6 334 56.6
Gorai.002G193700 Gossypium raimondii HOM05D006293 ORTHO05D007971 5.4e-94 348.6 334 56.6
vmacro02255 Vaccinium macrocarpon HOM05D006293 ORTHO05D007971 9.1e-94 347.8 336 63.7
Peaxi162Scf00362g00956 Petunia axillaris HOM05D001375 ORTHO05D001222 1.2e-93 347.4 336 58.3
FAN27G2989 Fragaria x ananassa HOM05D006293 ORTHO05D007971 1.6e-93 347.1 354 62.1
Gohir.A01G164300 Gossypium hirsutum HOM05D006293 ORTHO05D007971 2.0e-93 346.7 336 56.2
FAN20G1949 Fragaria x ananassa HOM05D006293 ORTHO05D007971 2.7e-93 346.3 355 60.3
Duzib132G0283 Durio zibethinus HOM05D006293 ORTHO05D007971 3.5e-93 345.9 322 64.9
FAN24G1019 Fragaria x ananassa HOM05D006293 ORTHO05D007971 3.5e-93 345.9 365 59.7
MD05G1116900 Malus domestica HOM05D006293 ORTHO05D007971 3.5e-93 345.9 350 63.4
FvH4_2g01740 Fragaria vesca HOM05D006293 ORTHO05D007971 2.9e-92 342.8 362 59.4
Cc02_g16450 Coffea canephora HOM05D006293 ORTHO05D007971 8.5e-92 341.3 334 60.2
Manes.11G090800 Manihot esculenta HOM05D006293 ORTHO05D007971 1.9e-91 340.1 329 61.7
TWI31G0553 Tripterygium wilfordii HOM05D006293 ORTHO05D007971 1.9e-91 340.1 318 66.0
Nn5g29105 Nelumbo nucifera HOM05D006293 ORTHO05D007971 2.5e-91 339.7 329 53.2
Ciclev10028711m.g Citrus clementina HOM05D006293 ORTHO05D007971 1.2e-90 337.4 360 64.2
Oeu014457.2 Olea europaea HOM05D006293 ORTHO05D007971 1.6e-90 337.0 341 58.4
Oeu060421.1 Olea europaea HOM05D006293 ORTHO05D007971 2.1e-90 336.7 334 66.5
PGSC0003DMG400001627 Solanum tuberosum HOM05D006293 ORTHO05D007971 2.7e-90 336.3 334 56.0
SGA_v2.0_scaffold32G13265 Striga asiatica HOM05D006293 ORTHO05D007971 3.6e-90 335.9 327 54.7
Solyc01g111210.3 Solanum lycopersicum HOM05D001375 ORTHO05D001222 1.4e-89 334.0 334 50.0
Rhsim11G0188500 Rhododendron simsii HOM05D006293 ORTHO05D007971 4.0e-89 332.4 386 52.6
Sopen01g053260 Solanum pennellii HOM05D006293 ORTHO05D007971 1.5e-88 330.5 336 49.4
CAN.G588.32 Capsicum annuum HOM05D006293 ORTHO05D007971 2.6e-88 329.7 340 57.1
Nitab4.5_0000980g0060 Nicotiana tabacum HOM05D001375 ORTHO05D001222 6.3e-87 325.1 334 58.7
MSTRG.16884 Avicennia marina HOM05D006293 ORTHO05D007971 2.4e-86 323.2 350 59.1
ClCG02G011620 Citrullus lanatus HOM05D006293 ORTHO05D007971 9.2e-86 321.2 330 55.2
Migut.B00115 Erythranthe guttata HOM05D006293 ORTHO05D007971 7.7e-85 318.2 327 58.4
TAR628G0693 Trochodendron aralioides HOM05D006293 ORTHO05D007971 2.3e-84 316.6 330 50.9
Lj5C183T16 Lonicera japonica HOM05D006293 ORTHO05D007971 6.6e-84 315.1 338 59.8
Nn1g05912 Nelumbo nucifera HOM05D006293 ORTHO05D007971 4.3e-83 312.4 325 54.5
Sed0004865 Sechium edule HOM05D006293 ORTHO05D007971 4.3e-83 312.4 329 57.8
Lsat_1_v5_gn_8_126000 Lactuca sativa HOM05D006293 ORTHO05D007971 2.8e-82 309.7 329 52.6
THA.LOC104804336 Tarenaya hassleriana HOM05D006293 ORTHO05D007971 6.1e-82 308.5 335 52.8
BolC9t54199H Brassica oleracea HOM05D006293 ORTHO05D007971 1.0e-81 307.8 332 60.2
HanXRQChr17g0557851 Helianthus annuus HOM05D006293 ORTHO05D007971 1.0e-81 307.8 330 56.4
TAR536G0014 Trochodendron aralioides HOM05D006293 ORTHO05D007971 1.0e-81 307.8 334 49.1
BcaC04g23011 Brassica carinata HOM05D006293 ORTHO05D007971 2.3e-81 306.6 332 60.2
BraA09t36749Z Brassica rapa HOM05D006293 ORTHO05D007971 5.2e-81 305.4 340 60.0
A09p11050 Brassica napus HOM05D006293 ORTHO05D007971 6.8e-81 305.1 340 59.7
C09p13060 Brassica napus HOM05D006293 ORTHO05D007971 8.9e-81 304.7 332 59.9
Dinv41970 Davidia involucrata HOM05D006293 ORTHO05D007971 1.2e-80 304.3 281 60.1
BcaB07g31757 Brassica carinata HOM05D006293 ORTHO05D007971 5.7e-80 302.0 352 60.2
CARHR106850 Cardamine hirsuta HOM05D006293 ORTHO05D007971 1.4e-78 297.4 334 56.0
BraA07t28238Z Brassica rapa HOM05D006293 ORTHO05D007971 1.8e-78 297.0 338 57.4
AL3G49260 Arabidopsis lyrata HOM05D006293 ORTHO05D007971 3.2e-78 296.2 329 58.4
MELO3C020791.2 Cucumis melo HOM05D006293 ORTHO05D007971 5.4e-78 295.4 332 56.3
BcaC06g36161 Brassica carinata HOM05D006293 ORTHO05D007971 7.0e-78 295.0 338 56.8
C07p07090 Brassica napus HOM05D006293 ORTHO05D007971 7.0e-78 295.0 338 56.8
BolC7t41128H Brassica oleracea HOM05D006293 ORTHO05D007971 7.0e-78 295.0 338 56.8
A07p04460 Brassica napus HOM05D006293 ORTHO05D007971 1.6e-77 293.9 338 56.8
ECA233G0605 Erigeron canadensis HOM05D001375 ORTHO05D001222 2.7e-77 293.1 319 56.1
Carub.0003s3038 Capsella rubella HOM05D006293 ORTHO05D007971 4.6e-77 292.4 344 58.1
DCAR_003705 Daucus carota HOM05D006293 ORTHO05D007971 4.6e-77 292.4 337 57.6
PSO170G2363 Papaver somniferum HOM05D006293 ORTHO05D007971 1.9e-75 287.0 355 55.5
Aa31LG8G13900 Aethionema arabicum HOM05D006293 ORTHO05D007971 2.1e-74 283.5 329 60.8
Sp3g30120 Schrenkiella parvula HOM05D006293 ORTHO05D007971 4.7e-74 282.3 370 52.2
CsaV3_2G015780 Cucumis sativus L. HOM05D006293 ORTHO05D007971 8.0e-74 281.6 332 58.1
AT2G16630 Arabidopsis thaliana HOM05D006293 ORTHO05D007971 1.0e-73 281.2 359 51.8
ATR0810G191 Amborella trichopoda HOM05D006293 ORTHO05D007971 5.2e-73 278.9 328 47.9
Hund06410 Selenicereus undatus HOM05D006293 ORTHO05D007971 3.4e-72 276.2 331 52.3
Thhalv10022734m.g Eutrema salsugineum HOM05D006293 ORTHO05D007971 9.8e-72 274.6 380 52.6
EL10Ac9g21428 Beta vulgaris HOM05D006293 ORTHO05D007971 2.2e-71 273.5 356 52.5
Aqoxy5G00988 Aquilegia oxysepala HOM05D006293 ORTHO05D007971 6.4e-71 271.9 316 49.4
Sc14g0002130 Simmondsia chinensis HOM05D006293 ORTHO05D007971 5.4e-70 268.9 329 47.4
PSO700G0292 Papaver somniferum HOM05D006293 ORTHO05D007971 1.6e-69 267.3 330 45.5
AUR62010081 Chenopodium quinoa HOM05D006293 ORTHO05D007971 2.0e-69 266.9 328 48.2
MBI05_g30117_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 2.7e-69 266.5 331 44.1
AUR62013075 Chenopodium quinoa HOM05D006293 ORTHO05D007971 4.6e-69 265.8 328 48.8
MBI05_g07501_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 6.0e-69 265.4 328 43.6
MBI05_g47219_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 2.3e-68 263.5 328 43.9
MBI05_g48109_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 3.4e-64 249.6 328 43.0
HanXRQChr10g0298941 Helianthus annuus HOM05D006293 ORTHO05D007971 7.5e-64 248.4 334 45.2
Ah.01g022670 Amaranthus hybridus HOM05D006293 ORTHO05D007971 9.8e-64 248.1 333 46.2
Ah.01g009070 Amaranthus hybridus HOM05D006293 ORTHO05D007971 1.9e-62 243.8 318 50.9
HPP92_013009 Vanilla planifolia HOM05D006293 ORTHO05D007971 1.3e-60 237.7 317 43.5
Aqoxy1G01171 Aquilegia oxysepala HOM05D006293 ORTHO05D007971 5.6e-59 232.3 267 60.7
unitig_0.g827 Utricularia gibba HOM05D006293 ORTHO05D007971 9.9e-56 221.5 344 51.7
BcaB03g16385 Brassica carinata HOM05D006293 ORTHO05D007971 1.1e-54 218.0 345 51.3
unitig_0.g43 Utricularia gibba HOM05D006293 ORTHO05D007971 1.1e-51 208.0 328 38.1
CDE05G1002 Ceratophyllum demersum HOM05D006293 ORTHO05D007971 5.6e-51 205.7 322 39.4
SEGI_19356 Sequoiadendron giganteum HOM05D006293 ORTHO05D007971 5.6e-51 205.7 340 45.0
Nitab4.5_0000283g0050 Nicotiana tabacum HOM05D001375 ORTHO05D001222 1.7e-47 194.1 118 73.7
MD10G1120100 Malus domestica HOM05D006293 ORTHO05D007971 6.4e-47 192.2 128 68.0
PGR042G0330 Punica granatum HOM05D006293 ORTHO05D007971 2.1e-45 187.2 393 43.3
MSTRG.20014 Avicennia marina HOM05D006293 ORTHO05D007971 1.1e-43 181.4 156 57.1
MD10G1120000 Malus domestica HOM05D006293 ORTHO05D007971 2.1e-42 177.2 132 66.7
MBI05_g21530_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 4.5e-40 169.5 245 38.0
SEGI_14996 Sequoiadendron giganteum HOM05D006293 ORTHO05D007971 9.3e-38 161.8 323 39.9
Gohir.1Z049391 Gossypium hirsutum HOM05D006293 ORTHO05D007971 4.9e-31 139.4 166 48.8
ECA234G1535 Erigeron canadensis HOM05D001991 ORTHO05D007971 8.4e-31 138.7 144 46.5
Aqoxy6G00177 Aquilegia oxysepala HOM05D006293 ORTHO05D007971 1.0e-23 115.2 126 46.0
Pp3c14_8250 Physcomitrium patens HOM05D006293 ORTHO05D007971 5.5e-22 109.4 326 26.7
Zm00001eb210030 Zea mays HOM05D006293 ORTHO05D007971 7.1e-22 109.0 128 42.2
MBI05_g31848_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 9.3e-22 108.6 107 50.5
Pp3c1_27500 Physcomitrium patens HOM05D006293 ORTHO05D007971 1.2e-21 108.2 315 27.6
Mapoly0014s0128 Marchantia polymorpha HOM05D006293 ORTHO05D007971 3.9e-20 103.2 311 31.8
SMO223G0025 Selaginella moellendorffii HOM05D006293 ORTHO05D007971 3.4e-16 90.1 339 24.8
SEGI_23181 Sequoiadendron giganteum HOM05D006293 ORTHO05D007971 5.9e-16 89.4 148 37.8
Actinidia00600 Actinidia chinensis HOM05D006293 ORTHO05D007971 7.2e-14 82.4 63 58.7
SGA_v2.0_scaffold9G04828 Striga asiatica HOM05D006293 ORTHO05D007971 3.3e-11 73.6 60 58.3
SMO367G0707 Selaginella moellendorffii HOM05D007363 ORTHO05D009018 6.9e-09 65.9 93 40.9
Mapoly0022s0141 Marchantia polymorpha HOM05D021038 ORTHO05D009018 8.5e-07 58.9 90 37.8
Lj1g0022592 Lotus japonicus HOM05D007363 ORTHO05D009018 1.4e-06 58.2 109 37.6
AagrBONN_evm.TU.Sc2ySwM_368.1639 Anthoceros agrestis HOM05D006293 ORTHO05D009176 5.5e-06 56.2 145 29.0


User provided reference genes

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