Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g000920 Pisum sativum HOM05D006255 ORTHO05D008014 9.9e-84 313.9 227 100.0
TPR.G38579 Trifolium pratense HOM05D006255 ORTHO05D008014 3.7e-78 295.4 225 94.2
Medtr3g118350 Medicago truncatula HOM05D006255 ORTHO05D008014 2.1e-73 279.6 223 83.0
Sed0013069 Sechium edule HOM05D006255 ORTHO05D008014 5.8e-68 261.5 228 73.2
PGR142G2886 Punica granatum HOM05D006255 ORTHO05D008014 6.5e-67 258.1 230 76.1
Ca_15278_v3 Cicer arietinum L. HOM05D006255 ORTHO05D008014 1.1e-66 257.3 225 88.0
Sed0016506 Sechium edule HOM05D006255 ORTHO05D008014 9.3e-66 254.2 228 61.4
THA.LOC104804084 Tarenaya hassleriana HOM05D006255 ORTHO05D008014 2.7e-65 252.7 230 71.7
Solyc01g111940.4 Solanum lycopersicum HOM05D006255 ORTHO05D008014 3.5e-65 252.3 229 75.5
Sopen01g053990 Solanum pennellii HOM05D006255 ORTHO05D008014 7.9e-65 251.1 229 75.1
ClCG02G003730 Citrullus lanatus HOM05D006255 ORTHO05D008014 1.0e-64 250.8 229 71.6
Atru.chr5.3479 Acer truncatum HOM05D006255 ORTHO05D008014 2.3e-64 249.6 230 73.5
Nn5g30887 Nelumbo nucifera HOM05D006255 ORTHO05D008014 2.3e-64 249.6 230 66.5
Cc09_g10450 Coffea canephora HOM05D006255 ORTHO05D008014 3.0e-64 249.2 225 76.4
Duzib248G1128 Durio zibethinus HOM05D006255 ORTHO05D008014 5.1e-64 248.4 230 70.9
TWI31G0945 Tripterygium wilfordii HOM05D006255 ORTHO05D008014 5.1e-64 248.4 230 69.6
CsaV3_7G001410 Cucumis sativus L. HOM05D006255 ORTHO05D008014 6.7e-64 248.1 228 70.6
arahy.Tifrunner.gnm1.ann1.5E63QU Arachis hypogaea HOM05D006255 ORTHO05D008014 8.7e-64 247.7 231 71.9
arahy.Tifrunner.gnm1.ann1.K7U5ID Arachis hypogaea HOM05D006255 ORTHO05D008014 8.7e-64 247.7 231 71.9
Ciclev10029213m.g Citrus clementina HOM05D006255 ORTHO05D008014 8.7e-64 247.7 226 69.0
Nitab4.5_0003603g0130 Nicotiana tabacum HOM05D006255 ORTHO05D008014 8.7e-64 247.7 225 75.1
Nitab4.5_0001506g0010 Nicotiana tabacum HOM05D006255 ORTHO05D008014 4.3e-63 245.4 225 79.1
Lj9A402T69 Lonicera japonica HOM05D006255 ORTHO05D008014 5.7e-63 245.0 226 69.0
Eucgr.I01476 Eucalyptus grandis HOM05D006255 ORTHO05D008014 7.4e-63 244.6 226 70.8
MELO3C013309.2 Cucumis melo HOM05D006255 ORTHO05D008014 2.2e-62 243.0 228 72.4
Nitab4.5_0001215g0050 Nicotiana tabacum HOM05D006255 ORTHO05D008014 3.7e-62 242.3 229 79.9
PGSC0003DMG401018633 Solanum tuberosum HOM05D006255 ORTHO05D008014 4.8e-62 241.9 225 72.4
vmacro02304 Vaccinium macrocarpon HOM05D006255 ORTHO05D008014 6.3e-62 241.5 226 66.4
ECA233G3172 Erigeron canadensis HOM05D006255 ORTHO05D008014 1.4e-61 240.4 228 74.1
TAR625G0439 Trochodendron aralioides HOM05D006255 ORTHO05D008014 1.4e-61 240.4 230 61.3
Hma1.2p1_0163F.1_g072870 Hydrangea macrophylla HOM05D006255 ORTHO05D008014 5.3e-61 238.4 226 74.8
Nitab4.5_0001629g0040 Nicotiana tabacum HOM05D006255 ORTHO05D008014 5.3e-61 238.4 229 76.9
Aa31LG9G40 Aethionema arabicum HOM05D006255 ORTHO05D008014 9.0e-61 237.7 249 69.5
MSTRG.19958 Avicennia marina HOM05D006255 ORTHO05D008014 9.0e-61 237.7 229 70.7
Prupe.8G172600 Prunus persica HOM05D006255 ORTHO05D008014 9.0e-61 237.7 230 69.6
MSTRG.16938 Avicennia marina HOM05D006255 ORTHO05D008014 1.5e-60 236.9 229 72.1
Manes.11G100600 Manihot esculenta HOM05D006255 ORTHO05D008014 1.5e-60 236.9 226 65.0
MBI05_g35101_MAGBIO Magnolia biondii HOM05D006255 ORTHO05D008014 2.0e-60 236.5 226 64.2
Peaxi162Scf00362g00349 Petunia axillaris HOM05D006255 ORTHO05D008014 2.0e-60 236.5 226 77.9
Potri.009G140200 Populus trichocarpa HOM05D006255 ORTHO05D008014 7.7e-60 234.6 230 70.9
Thecc.02G052300 Theobroma cacao HOM05D006255 ORTHO05D008014 7.7e-60 234.6 230 72.6
Aa31LG7G15760 Aethionema arabicum HOM05D007460 ORTHO05D009396 1.3e-59 233.8 246 67.5
Aqoxy5G01073 Aquilegia oxysepala HOM05D006255 ORTHO05D008014 1.7e-59 233.4 231 67.5
CSS0039919 Camellia sinensis var. sinensis HOM05D006255 ORTHO05D008014 1.7e-59 233.4 226 62.8
Gohir.D01G162900 Gossypium hirsutum HOM05D006255 ORTHO05D008014 1.7e-59 233.4 230 70.0
Gorai.002G202100 Gossypium raimondii HOM05D006255 ORTHO05D008014 1.7e-59 233.4 230 70.0
Actinidia20544 Actinidia chinensis HOM05D006255 ORTHO05D008014 2.2e-59 233.0 228 65.8
Gohir.D12G037200 Gossypium hirsutum HOM05D006255 ORTHO05D008014 2.2e-59 233.0 230 73.5
HanXRQChr16g0527781 Helianthus annuus HOM05D006255 ORTHO05D008014 3.8e-59 232.3 229 74.7
Lj4g0004587 Lotus japonicus HOM05D006255 ORTHO05D008014 3.8e-59 232.3 228 76.3
Lsat_1_v5_gn_8_122201 Lactuca sativa HOM05D006255 ORTHO05D008014 5.0e-59 231.9 225 76.4
Gorai.008G038300 Gossypium raimondii HOM05D006255 ORTHO05D008014 1.1e-58 230.7 230 73.9
Cpa.g.sc20.136 Carica papaya HOM05D006255 ORTHO05D008014 1.4e-58 230.3 226 72.6
Dinv14143 Davidia involucrata HOM05D006255 ORTHO05D008014 1.9e-58 229.9 230 73.5
ATR0661G177 Amborella trichopoda HOM05D006255 ORTHO05D008014 2.5e-58 229.6 226 66.4
CANSAT25G2216 Cannabis sativa HOM05D006255 ORTHO05D008014 2.5e-58 229.6 230 75.2
Gohir.A12G035500 Gossypium hirsutum HOM05D006255 ORTHO05D008014 3.2e-58 229.2 230 65.2
COL.COLO4_18000 Corchorus olitorius HOM05D006255 ORTHO05D008014 5.5e-58 228.4 226 73.0
EL10Ac9g21307 Beta vulgaris HOM05D006255 ORTHO05D008014 7.2e-58 228.0 227 71.4
Carub.0001s1596 Capsella rubella HOM05D006255 ORTHO05D008014 1.2e-57 227.3 228 68.4
CiPaw.05G087400 Carya illinoinensis HOM05D006255 ORTHO05D008014 3.6e-57 225.7 230 77.8
PSO675G3819 Papaver somniferum HOM05D006255 ORTHO05D008014 3.6e-57 225.7 230 73.9
SGA_v2.0_scaffold32G13327 Striga asiatica HOM05D006255 ORTHO05D008014 4.6e-57 225.3 229 72.1
Actinidia18024 Actinidia chinensis HOM05D006255 ORTHO05D008014 6.1e-57 224.9 228 68.0
Ah.01g007960 Amaranthus hybridus HOM05D006255 ORTHO05D008014 1.4e-56 223.8 230 72.2
Cfa005320 Carpinus fangiana HOM05D006255 ORTHO05D010524 2.3e-56 223.0 222 73.0
MD10G1131800 Malus domestica HOM05D006255 ORTHO05D008014 5.1e-56 221.9 230 73.0
Nn6g31846 Nelumbo nucifera HOM05D006255 ORTHO05D008014 1.5e-55 220.3 230 67.8
SalBow1G8078 Salvia bowleyana HOM05D006255 ORTHO05D010524 2.0e-55 219.9 228 73.7
AL1G28330 Arabidopsis lyrata HOM05D006255 ORTHO05D008014 2.8e-54 216.1 228 66.7
Phvul.009G117000 Phaseolus vulgaris HOM05D006255 ORTHO05D008014 2.8e-54 216.1 230 67.4
unitig_0.g812 Utricularia gibba HOM05D006255 ORTHO05D008014 3.7e-54 215.7 225 67.6
Lalb_Chr08g0246771 Lupinus albus HOM05D006255 ORTHO05D008014 4.8e-54 215.3 232 72.4
MD05G1128500 Malus domestica HOM05D006255 ORTHO05D008014 8.2e-54 214.5 230 76.1
QL11p053294 Quercus lobata HOM05D006255 ORTHO05D008014 1.1e-53 214.2 227 75.3
Glyma.04G001700 Glycine max HOM05D006255 ORTHO05D008014 4.1e-53 212.2 230 73.0
CARHR016680 Cardamine hirsuta HOM05D006255 ORTHO05D008014 5.3e-53 211.8 228 70.6
FAN27G1328 Fragaria x ananassa HOM05D006255 ORTHO05D008014 9.1e-53 211.1 225 78.2
FvH4_2g15950 Fragaria vesca HOM05D006255 ORTHO05D008014 1.5e-52 210.3 227 77.5
FAN15G2553 Fragaria x ananassa HOM05D006255 ORTHO05D008014 1.5e-52 210.3 227 74.4
Sabra09G0108900 Salix brachista HOM05D006255 ORTHO05D008014 2.0e-52 209.9 256 65.6
FAN24G2083 Fragaria x ananassa HOM05D006255 ORTHO05D008014 2.6e-52 209.5 225 77.8
RcHm_v2.0_Chr6g0279491 Rosa chinensis HOM05D006255 ORTHO05D008014 7.7e-52 208.0 225 78.2
BcaB03g14828 Brassica carinata HOM05D006255 ORTHO05D008014 1.0e-51 207.6 228 68.0
PSO541G1652 Papaver somniferum HOM05D006255 ORTHO05D008014 1.3e-51 207.2 230 70.0
Glyma.06G001200 Glycine max HOM05D006255 ORTHO05D008014 1.7e-51 206.8 230 67.0
Oeu029013.1 Olea europaea HOM05D006255 ORTHO05D008014 2.2e-51 206.5 227 61.2
Sc08g0002620 Simmondsia chinensis HOM05D006255 ORTHO05D008014 2.9e-51 206.1 230 66.5
BolC6t39525H Brassica oleracea HOM05D006255 ORTHO05D008014 5.5e-50 201.8 227 73.6
Os04g0561600 Oryza sativa ssp. japonica HOM05D006255 ORTHO05D008014 7.2e-50 201.4 235 58.3
CDE02G2216 Ceratophyllum demersum HOM05D006255 ORTHO05D008014 1.6e-49 200.3 230 61.7
C06p44610 Brassica napus HOM05D002002 ORTHO05D008711 2.7e-49 199.5 226 73.5
BraA07t31267Z Brassica rapa HOM05D006255 ORTHO05D008014 1.0e-48 197.6 227 73.6
A07p37050 Brassica napus HOM05D002002 ORTHO05D008711 1.1e-47 194.1 226 73.0
AT1G16210 Arabidopsis thaliana HOM05D006255 ORTHO05D008014 7.4e-47 191.4 228 61.0
BcaB03g14827 Brassica carinata HOM05D002002 ORTHO05D008711 2.2e-46 189.9 226 69.5
Sp4g00050 Schrenkiella parvula HOM05D006255 ORTHO05D008014 2.2e-46 189.9 223 65.9
Duzib132G0230 Durio zibethinus HOM05D006255 ORTHO05D008014 6.3e-46 188.3 230 72.6
Haze_02065 Corylus avellana HOM05D006255 ORTHO05D008014 1.8e-45 186.8 331 51.1
HPP92_025891 Vanilla planifolia HOM05D006255 ORTHO05D008014 1.8e-45 186.8 227 50.7
Gohir.A01G171900 Gossypium hirsutum HOM05D006255 ORTHO05D008014 4.1e-45 185.7 152 64.5
HPP92_022389 Vanilla planifolia HOM05D006255 ORTHO05D008014 2.6e-44 183.0 223 47.5
Zm00001eb074070 Zea mays HOM05D006255 ORTHO05D008014 1.7e-43 180.3 237 59.5
Pp3c7_26990 Physcomitrium patens HOM05D006255 ORTHO05D008014 2.2e-43 179.9 229 55.9
Pp3c11_730 Physcomitrium patens HOM05D006255 ORTHO05D008014 3.8e-43 179.1 229 56.3
Pp3c11_731 Physcomitrium patens HOM05D006255 ORTHO05D008014 6.5e-43 178.3 229 56.3
CBR_g61263 Chara braunii HOM05D006255 ORTHO05D008014 1.1e-42 177.6 226 49.1
Mapoly0058s0055 Marchantia polymorpha HOM05D006255 ORTHO05D008014 1.9e-42 176.8 226 53.5
SMO119G0083 Selaginella moellendorffii HOM05D006255 ORTHO05D008014 3.2e-42 176.0 229 47.2
AagrBONN_evm.TU.Sc2ySwM_368.1212 Anthoceros agrestis HOM05D006255 ORTHO05D008014 7.2e-42 174.9 228 55.3
Lj5C174T15 Lonicera japonica HOM05D006255 ORTHO05D008014 2.7e-41 172.9 224 66.1
VMungo1309G1654 Vigna mungo HOM05D006255 ORTHO05D008014 2.7e-41 172.9 230 64.8
Os03g0131800 Oryza sativa ssp. japonica HOM05D006255 ORTHO05D008014 2.6e-39 166.4 229 55.5
AUR62009986 Chenopodium quinoa HOM05D006255 ORTHO05D008014 4.4e-39 165.6 223 52.9
CAN.G1235.32 Capsicum annuum HOM05D006255 ORTHO05D008014 1.8e-37 160.2 188 69.1
Ah.01g023450 Amaranthus hybridus HOM05D000939 ORTHO05D000745 4.5e-36 155.6 211 63.0
CDE09G0466 Ceratophyllum demersum HOM05D006255 ORTHO05D008014 8.5e-35 151.4 94 75.5
GSVIVG01023898001 Vitis vinifera HOM05D006255 ORTHO05D008014 3.6e-25 119.4 66 81.8
Gohir.A03G206650 Gossypium hirsutum HOM05D006255 ORTHO05D008014 1.4e-24 117.5 225 37.8
AUR62012975 Chenopodium quinoa HOM05D006255 ORTHO05D008014 3.0e-24 116.3 223 44.4
C06p36040 Brassica napus HOM05D006255 ORTHO05D008014 4.4e-23 112.5 71 74.6
Gorai.005G255900 Gossypium raimondii HOM05D006255 ORTHO05D008014 9.8e-23 111.3 225 36.0
Peaxi162Scf00875g00037 Petunia axillaris HOM05D006255 ORTHO05D008014 1.3e-22 110.9 90 61.1
BolC6t38725H Brassica oleracea HOM05D006255 ORTHO05D008014 4.9e-22 109.0 68 75.0
Cre14.g629500 Chlamydomonas reinhardtii HOM05D006255 ORTHO05D008014 1.8e-16 90.5 225 34.2
PRCOL_00005063 Prasinoderma coloniale HOM05D006255 ORTHO05D008014 3.4e-15 86.3 226 31.0
Migut.H01073 Erythranthe guttata HOM05D006255 ORTHO05D008014 7.8e-12 75.1 225 36.0
MCO11G585 Micromonas commoda HOM05D006255 ORTHO05D008014 1.5e-10 70.9 162 34.6
BcaC08g45811 Brassica carinata HOM05D006255 ORTHO05D008014 9.5e-10 68.2 40 77.5
Cfa024524 Carpinus fangiana HOM05D006255 ORTHO05D008014 2.6e-07 60.1 78 44.9
PSO541G1702 Papaver somniferum HOM05D006255 ORTHO05D008014 5.8e-07 58.9 100 40.0


User provided reference genes

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