Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g000480 Pisum sativum HOM05D005203 ORTHO05D006383 1.2e-216 756.1 366 100.0
TPR.G38553 Trifolium pratense HOM05D005203 ORTHO05D006383 6.3e-205 717.2 366 94.0
Ca_15273_v3 Cicer arietinum L. HOM05D005203 ORTHO05D006383 1.6e-200 702.6 361 92.0
Glyma.06G000300 Glycine max HOM05D005203 ORTHO05D006383 3.8e-194 681.4 360 89.7
Glyma.04G000400 Glycine max HOM05D005203 ORTHO05D006383 2.1e-192 675.6 361 88.9
Lj1g0021981 Lotus japonicus HOM05D005203 ORTHO05D006383 8.2e-189 663.7 361 86.4
Phvul.009G115600 Phaseolus vulgaris HOM05D005203 ORTHO05D006383 6.5e-186 654.1 361 84.8
CiPaw.06G115500 Carya illinoinensis HOM05D005203 ORTHO05D006383 2.0e-179 632.5 361 80.6
Dinv41871 Davidia involucrata HOM05D005203 ORTHO05D006383 5.0e-178 627.9 362 80.7
CSS0012413 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 1.9e-177 625.9 362 79.8
CANSAT25G3783 Cannabis sativa HOM05D005203 ORTHO05D006383 3.6e-176 621.7 361 80.1
Prupe.8G179800 Prunus persica HOM05D005203 ORTHO05D006383 4.7e-176 621.3 360 81.4
Potri.004G206900 Populus trichocarpa HOM05D005203 ORTHO05D006383 8.8e-175 617.1 361 78.4
Nn6g31681 Nelumbo nucifera HOM05D005203 ORTHO05D006383 1.5e-174 616.3 362 78.5
Dinv14173 Davidia involucrata HOM05D005203 ORTHO05D006383 9.8e-174 613.6 393 74.3
Potri.009G168000 Populus trichocarpa HOM05D005203 ORTHO05D006383 9.8e-174 613.6 361 78.1
Thecc.02G146000 Theobroma cacao HOM05D005203 ORTHO05D006383 9.8e-174 613.6 361 79.2
Sed0018804 Sechium edule HOM05D005203 ORTHO05D006383 2.8e-173 612.1 360 79.7
Solyc01g112240.4 Solanum lycopersicum HOM05D005203 ORTHO05D006383 3.7e-173 611.7 361 77.6
TWI75G1664 Tripterygium wilfordii HOM05D005203 ORTHO05D006383 3.7e-173 611.7 360 79.2
Ciclev10028418m.g Citrus clementina HOM05D005203 ORTHO05D006383 4.9e-173 611.3 361 78.7
CsaV3_7G001910 Cucumis sativus L. HOM05D005203 ORTHO05D006383 1.1e-172 610.1 360 78.9
Migut.B00006 Erythranthe guttata HOM05D005203 ORTHO05D006383 1.4e-172 609.8 360 77.5
FvH4_2g16770 Fragaria vesca HOM05D005203 ORTHO05D006383 2.4e-172 609.0 361 78.9
arahy.Tifrunner.gnm1.ann1.H6WGQ1 Arachis hypogaea HOM05D005203 ORTHO05D006383 5.4e-172 607.8 362 82.9
PSO210G4213 Papaver somniferum HOM05D005203 ORTHO05D006383 9.1e-172 607.1 362 77.9
MELO3C013249.2 Cucumis melo HOM05D005203 ORTHO05D006383 2.7e-171 605.5 360 78.6
FAN15G3115 Fragaria x ananassa HOM05D005203 ORTHO05D006383 3.5e-171 605.1 361 78.4
Atru.chr5.3533 Acer truncatum HOM05D005203 ORTHO05D006383 1.0e-170 603.6 360 78.1
Aqoxy5G00999 Aquilegia oxysepala HOM05D005203 ORTHO05D006383 1.0e-170 603.6 362 77.1
PSO170G2598 Papaver somniferum HOM05D005203 ORTHO05D006383 1.0e-170 603.6 362 77.3
Cc09_g10810 Coffea canephora HOM05D005203 ORTHO05D006383 6.6e-170 600.9 369 76.7
Peaxi162Scf00362g00132 Petunia axillaris HOM05D005203 ORTHO05D006383 6.6e-170 600.9 374 75.9
Gohir.D12G014000 Gossypium hirsutum HOM05D005203 ORTHO05D006383 1.1e-169 600.1 361 77.0
MSTRG.19946 Avicennia marina HOM05D005203 ORTHO05D006383 1.5e-169 599.7 360 76.4
Eucgr.H04989 Eucalyptus grandis HOM05D005203 ORTHO05D006383 5.6e-169 597.8 361 78.1
PGR042G0992 Punica granatum HOM05D005203 ORTHO05D006383 7.2e-169 597.4 360 77.8
ECA246G3822 Erigeron canadensis HOM05D005203 ORTHO05D006383 9.5e-169 597.0 361 75.9
Lalb_Chr08g0246871 Lupinus albus HOM05D005203 ORTHO05D006383 1.6e-168 596.3 361 80.3
Gohir.A12G013200 Gossypium hirsutum HOM05D005203 ORTHO05D006383 3.6e-168 595.1 360 76.7
ECA234G1180 Erigeron canadensis HOM05D005203 ORTHO05D006383 1.4e-167 593.2 360 76.4
Sc18g0005820 Simmondsia chinensis HOM05D005203 ORTHO05D006383 1.4e-167 593.2 361 74.2
Gorai.008G014000 Gossypium raimondii HOM05D005203 ORTHO05D006383 1.8e-167 592.8 362 76.2
Manes.11G110000 Manihot esculenta HOM05D005203 ORTHO05D006383 1.8e-167 592.8 361 76.2
GSVIVG01002028001 Vitis vinifera HOM05D005203 ORTHO05D006383 1.8e-167 592.8 361 77.8
Cfa005369 Carpinus fangiana HOM05D005203 ORTHO05D006383 2.3e-167 592.4 361 77.6
MD10G1141600 Malus domestica HOM05D005203 ORTHO05D006383 1.5e-166 589.7 360 78.9
HanXRQChr15g0476431 Helianthus annuus HOM05D005203 ORTHO05D006383 1.7e-165 586.3 363 75.8
Sp7g37480 Schrenkiella parvula HOM05D005203 ORTHO05D006383 1.7e-165 586.3 360 74.4
Carub.0007s0018 Capsella rubella HOM05D005203 ORTHO05D006383 1.4e-164 583.2 363 73.6
THA.LOC104824732 Tarenaya hassleriana HOM05D005203 ORTHO05D006383 1.8e-164 582.8 361 75.6
RcHm_v2.0_Chr6g0280891 Rosa chinensis HOM05D005203 ORTHO05D006383 3.2e-164 582.0 361 77.0
Eucgr.L00584 Eucalyptus grandis HOM05D005203 ORTHO05D006383 9.2e-164 580.5 345 78.6
AT4G38240 Arabidopsis thaliana HOM05D005203 ORTHO05D006383 4.6e-163 578.2 360 73.6
Lsat_1_v5_gn_4_71380 Lactuca sativa HOM05D005203 ORTHO05D006383 4.6e-163 578.2 361 73.7
ClCG02G003410 Citrullus lanatus HOM05D005203 ORTHO05D006383 5.9e-163 577.8 367 76.6
AL7G10160 Arabidopsis lyrata HOM05D005203 ORTHO05D006383 7.8e-163 577.4 360 74.2
CARHR294030 Cardamine hirsuta HOM05D005203 ORTHO05D006383 1.7e-162 576.2 361 73.4
FAN27G1508 Fragaria x ananassa HOM05D005203 ORTHO05D006383 3.0e-162 575.5 361 75.6
MD05G1138700 Malus domestica HOM05D005203 ORTHO05D006383 8.6e-162 573.9 360 76.4
CSS0021914 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 5.6e-161 571.2 352 75.9
CSS0022527 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 2.1e-160 569.3 352 75.6
Lsat_1_v5_gn_3_48560 Lactuca sativa HOM05D005203 ORTHO05D006383 2.1e-160 569.3 363 74.4
BolC7t46794H Brassica oleracea HOM05D005203 ORTHO05D006383 2.8e-160 568.9 381 70.6
HanXRQChr10g0298431 Helianthus annuus HOM05D005203 ORTHO05D006383 2.3e-159 565.8 366 73.5
MBI05_g33297_MAGBIO Magnolia biondii HOM05D005203 ORTHO05D006383 8.9e-159 563.9 362 74.9
Os02g0832800 Oryza sativa ssp. japonica HOM05D005203 ORTHO05D006383 7.5e-158 560.8 361 70.4
FAN24G3349 Fragaria x ananassa HOM05D005203 ORTHO05D006383 9.8e-158 560.5 361 74.5
Zm00001eb421090 Zea mays HOM05D005203 ORTHO05D006383 5.4e-156 554.7 361 70.4
BraA06t27778Z Brassica rapa HOM05D005203 ORTHO05D006383 9.2e-156 553.9 370 70.8
BNapus_Darmor_BZH_scaffold_146p00070 Brassica napus HOM05D005203 ORTHO05D006383 3.5e-155 552.0 361 72.3
Nitab4.5_0000783g0090 Nicotiana tabacum HOM05D005203 ORTHO05D006383 5.0e-154 548.1 385 69.1
Haze_02001 Corylus avellana HOM05D005203 ORTHO05D006383 6.6e-154 547.7 350 75.1
arahy.Tifrunner.gnm1.ann1.Z16TJ0 Arachis hypogaea HOM05D005203 ORTHO05D006383 1.9e-153 546.2 363 76.3
Thhalv10025208m.g Eutrema salsugineum HOM05D005203 ORTHO05D006383 2.1e-152 542.7 360 70.3
CiPaw.05G093000 Carya illinoinensis HOM05D005203 ORTHO05D006383 8.3e-149 530.8 374 69.3
SMO201G0157 Selaginella moellendorffii HOM05D005203 ORTHO05D006383 8.6e-146 520.8 339 70.2
Actinidia20576 Actinidia chinensis HOM05D005203 ORTHO05D006383 2.1e-144 516.2 343 70.6
Oeu006117.1 Olea europaea HOM05D005203 ORTHO05D006383 1.4e-143 513.5 351 69.5
SalBow1G5214 Salvia bowleyana HOM05D005203 ORTHO05D006383 2.3e-138 496.1 341 70.4
Aa31LG6G16700 Aethionema arabicum HOM05D005203 ORTHO05D006383 4.3e-137 491.9 330 69.1
vmacro02339 Vaccinium macrocarpon HOM05D005203 ORTHO05D006383 2.4e-135 486.1 525 49.7
Mapoly0041s0049 Marchantia polymorpha HOM05D005203 ORTHO05D006383 3.1e-135 485.7 356 64.6
Cpa.g.c28580 Carica papaya HOM05D005203 ORTHO05D006383 3.4e-134 482.3 361 64.5
BcaNung01996 Brassica carinata HOM05D005203 ORTHO05D006383 4.4e-134 481.9 366 65.3
Cfa005368 Carpinus fangiana HOM05D005203 ORTHO05D006383 6.0e-131 471.5 340 69.1
Pp3c22_17330 Physcomitrium patens HOM05D005203 ORTHO05D006383 1.1e-129 467.2 360 63.6
HPP92_022155 Vanilla planifolia HOM05D005203 ORTHO05D006383 7.3e-129 464.5 345 63.5
AagrBONN_evm.TU.Sc2ySwM_362.2915 Anthoceros agrestis HOM05D005203 ORTHO05D006383 1.9e-124 449.9 353 63.5
Pp3c12_4490 Physcomitrium patens HOM05D005203 ORTHO05D006383 7.1e-124 448.0 327 61.5
Sabra09G0130500 Salix brachista HOM05D005203 ORTHO05D006383 1.2e-118 430.6 358 61.2
DCAR_026076 Daucus carota HOM05D005203 ORTHO05D006383 2.2e-117 426.4 329 63.8
SGA_v2.0_scaffold399G50809 Striga asiatica HOM05D005203 ORTHO05D006383 9.3e-116 421.0 360 60.6
Sabra04G0139200 Salix brachista HOM05D005203 ORTHO05D006383 6.9e-111 404.8 364 57.1
CBR_g40811 Chara braunii HOM05D005203 ORTHO05D006383 2.6e-110 402.9 340 54.7
AUR62013174 Chenopodium quinoa HOM05D005203 ORTHO05D006383 7.6e-110 401.4 345 59.7
Medtr3g118520 Medicago truncatula HOM05D005203 ORTHO05D006383 4.9e-109 398.7 204 95.1
HPP92_004948 Vanilla planifolia HOM05D005203 ORTHO05D006383 6.5e-109 398.3 360 55.3
Aa31LG1G14200 Aethionema arabicum HOM05D005203 ORTHO05D006383 3.7e-104 382.5 353 54.7
VMungo1309G0298 Vigna mungo HOM05D005203 ORTHO05D006383 1.4e-103 380.6 204 89.2
Rhsim11G0198000 Rhododendron simsii HOM05D005203 ORTHO05D006383 2.5e-97 359.8 300 61.0
Lj5A171G136 Lonicera japonica HOM05D005203 ORTHO05D006383 3.7e-96 355.9 204 79.4
QL11p056319 Quercus lobata HOM05D005203 ORTHO05D006383 1.4e-95 354.0 204 81.4
CAN.G1725.2 Capsicum annuum HOM05D005203 ORTHO05D006383 3.8e-93 345.9 204 79.9
Sopen01g054300 Solanum pennellii HOM05D005203 ORTHO05D006383 1.1e-92 344.4 204 77.0
PGSC0003DMG402014680 Solanum tuberosum HOM05D005203 ORTHO05D006383 4.2e-92 342.4 204 77.5
AUR62010173 Chenopodium quinoa HOM05D005203 ORTHO05D006383 4.6e-91 339.0 340 50.9
TAR376G0977 Trochodendron aralioides HOM05D005203 ORTHO05D006383 3.3e-89 332.8 362 49.7
CDE07G0143 Ceratophyllum demersum HOM05D005203 ORTHO05D006383 2.2e-88 330.1 206 75.7
MCO10G329 Micromonas commoda HOM05D005203 ORTHO05D006383 8.5e-85 318.2 339 46.6
ATR0807G194 Amborella trichopoda HOM05D005203 ORTHO05D006383 2.5e-84 316.6 205 72.2
COL.COLO4_19776 Corchorus olitorius HOM05D005203 ORTHO05D006383 9.4e-84 314.7 361 49.0
Hund06364 Selenicereus undatus HOM05D005203 ORTHO05D006383 7.4e-81 305.1 326 49.4
TAR628G1330 Trochodendron aralioides HOM05D005203 ORTHO05D006383 7.7e-78 295.0 355 46.8
EL10Ac9g21529 Beta vulgaris HOM05D005203 ORTHO05D006383 2.2e-77 293.5 360 44.7
Eucgr.L00583 Eucalyptus grandis HOM05D005203 ORTHO05D006383 1.1e-68 264.6 152 80.9
CSS0033501 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 1.8e-66 257.3 163 73.6
CSS0046634 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 1.8e-66 257.3 163 73.6
CSS0007702 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 3.4e-65 253.1 163 72.4
Medtr3g118525 Medicago truncatula HOM05D005203 ORTHO05D006383 1.3e-61 241.1 127 89.0
ATR0807G110 Amborella trichopoda HOM05D005203 ORTHO05D006383 3.6e-59 233.0 152 70.4
Ah.01g009970 Amaranthus hybridus HOM05D005203 ORTHO05D006383 6.1e-59 232.3 187 61.0
VMungo1309G1049 Vigna mungo HOM05D005203 ORTHO05D006383 4.1e-55 219.5 127 78.7
QL11p056323 Quercus lobata HOM05D005203 ORTHO05D006383 6.8e-50 202.2 124 73.4
Eucgr.H04987 Eucalyptus grandis HOM05D005203 ORTHO05D006383 1.7e-45 187.6 127 69.3
MCO01G683 Micromonas commoda HOM05D005203 ORTHO05D006383 7.3e-44 182.2 277 36.8
CDE07G2075 Ceratophyllum demersum HOM05D005203 ORTHO05D006383 1.4e-42 177.9 123 65.0
Lj5A171G135 Lonicera japonica HOM05D005203 ORTHO05D006383 1.4e-42 177.9 128 68.8
GSVIVG01002907001 Vitis vinifera HOM05D005203 ORTHO05D006383 8.9e-42 175.3 95 86.3
Nitab4.5_0010601g0030 Nicotiana tabacum HOM05D005203 ORTHO05D006383 1.1e-36 158.3 175 51.4
AL7G13060 Arabidopsis lyrata HOM05D005203 ORTHO05D006383 7.8e-30 135.6 99 66.7
CANSAT78G0806 Cannabis sativa HOM05D005203 ORTHO05D006383 9.5e-28 128.6 83 74.7
Sc18g0005790 Simmondsia chinensis HOM05D005203 ORTHO05D006383 1.2e-27 128.3 94 61.7
PGSC0003DMG403014680 Solanum tuberosum HOM05D005203 ORTHO05D006383 4.7e-27 126.3 81 69.1
Sed0000358 Sechium edule HOM05D005203 ORTHO05D006383 7.1e-23 112.5 108 55.6
SEGI_16108 Sequoiadendron giganteum HOM05D005203 ORTHO05D006383 2.4e-15 87.4 64 62.5
AL6G14740 Arabidopsis lyrata HOM05D005203 ORTHO05D006383 4.6e-14 83.2 45 84.4
CAN.G533.11 Capsicum annuum HOM05D005203 ORTHO05D006383 2.3e-13 80.9 48 70.8
EL10Ac1g01043 Beta vulgaris HOM05D005203 ORTHO05D006383 8.1e-11 72.4 31 93.5


User provided reference genes

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