Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat4g207360 Pisum sativum HOM05D004278 ORTHO05D005544 3.1e-106 388.7 223 100.0
TPR.G9766 Trifolium pratense HOM05D004278 ORTHO05D005544 6.5e-104 380.9 223 97.8
Medtr8g010570 Medicago truncatula HOM05D004278 ORTHO05D005544 1.1e-103 380.2 223 97.8
Ca_17260_v3 Cicer arietinum L. HOM05D004278 ORTHO05D005544 7.4e-100 367.5 228 93.4
arahy.Tifrunner.gnm1.ann1.673KA0 Arachis hypogaea HOM05D004278 ORTHO05D005544 4.5e-97 358.2 223 91.5
Lalb_Chr09g0330921 Lupinus albus HOM05D004278 ORTHO05D005544 5.9e-97 357.8 223 91.5
Lalb_Chr16g0387561 Lupinus albus HOM05D004278 ORTHO05D005544 5.9e-97 357.8 223 91.5
Phvul.006G187900 Phaseolus vulgaris HOM05D004278 ORTHO05D005544 5.9e-97 357.8 223 91.9
Glyma.15G071900 Glycine max HOM05D004278 ORTHO05D005544 1.3e-96 356.7 223 91.5
VMungo0540G2365 Vigna mungo HOM05D004278 ORTHO05D005544 6.5e-96 354.4 223 90.6
Glyma.13G241500 Glycine max HOM05D004278 ORTHO05D005544 7.2e-95 350.9 223 90.1
Lj2g0008973 Lotus japonicus HOM05D004278 ORTHO05D005544 1.6e-94 349.7 229 89.5
CiPaw.05G064500 Carya illinoinensis HOM05D004278 ORTHO05D005544 3.0e-93 345.5 223 90.6
RcHm_v2.0_Chr7g0222141 Rosa chinensis HOM05D004278 ORTHO05D005544 4.0e-93 345.1 225 90.7
TWI31G1137 Tripterygium wilfordii HOM05D004278 ORTHO05D005544 5.2e-93 344.7 223 88.8
FvH4_5g29280 Fragaria vesca HOM05D004278 ORTHO05D005544 8.8e-93 344.0 225 90.2
FAN18G1232 Fragaria x ananassa HOM05D004278 ORTHO05D005544 5.7e-92 341.3 225 89.8
FAN08G1460 Fragaria x ananassa HOM05D004278 ORTHO05D005544 7.5e-92 340.9 225 89.8
Manes.15G163400 Manihot esculenta HOM05D004278 ORTHO05D005544 7.5e-92 340.9 223 88.3
PSO541G5084 Papaver somniferum HOM05D004278 ORTHO05D005544 9.7e-92 340.5 223 87.0
Sed0011539 Sechium edule HOM05D004278 ORTHO05D005544 1.3e-91 340.1 223 87.9
CSS0030568 Camellia sinensis var. sinensis HOM05D004278 ORTHO05D005544 2.8e-91 339.0 229 86.5
Cpa.g.sc62.151 Carica papaya HOM05D004278 ORTHO05D005544 2.8e-91 339.0 223 87.4
Prupe.8G096900 Prunus persica HOM05D004278 ORTHO05D005544 2.8e-91 339.0 223 89.2
PSO675G8903 Papaver somniferum HOM05D004278 ORTHO05D005544 3.7e-91 338.6 223 86.5
TAR628G0274 Trochodendron aralioides HOM05D004278 ORTHO05D005544 3.7e-91 338.6 223 88.3
PGR042G2304 Punica granatum HOM05D004278 ORTHO05D005544 4.8e-91 338.2 222 88.3
TWI75G0915 Tripterygium wilfordii HOM05D004278 ORTHO05D005544 8.2e-91 337.4 223 87.4
Thecc.02G085200 Theobroma cacao HOM05D004278 ORTHO05D005544 1.4e-90 336.7 223 87.0
Nn5g29610 Nelumbo nucifera HOM05D004278 ORTHO05D005544 1.8e-90 336.3 223 87.9
Potri.009G116000 Populus trichocarpa HOM05D004278 ORTHO05D005544 2.4e-90 335.9 223 87.4
Actinidia27895 Actinidia chinensis HOM05D004278 ORTHO05D005544 7.0e-90 334.3 227 86.3
Gohir.A13G034300 Gossypium hirsutum HOM05D004278 ORTHO05D005544 7.0e-90 334.3 223 86.5
ClCG02G005010 Citrullus lanatus HOM05D004278 ORTHO05D005544 9.1e-90 334.0 236 83.9
CsaV3_7G023570 Cucumis sativus L. HOM05D004278 ORTHO05D005544 9.1e-90 334.0 223 87.4
Gorai.013G037100 Gossypium raimondii HOM05D004278 ORTHO05D005544 9.1e-90 334.0 223 86.5
MELO3C012522.2 Cucumis melo HOM05D004278 ORTHO05D005544 1.6e-89 333.2 223 87.4
MD10G1076300 Malus domestica HOM05D004278 ORTHO05D005544 1.6e-89 333.2 223 87.4
Duzib132G1254 Durio zibethinus HOM05D004278 ORTHO05D005544 2.0e-89 332.8 223 87.0
MD05G1066300 Malus domestica HOM05D004278 ORTHO05D005544 2.0e-89 332.8 223 87.4
Gohir.D13G032700 Gossypium hirsutum HOM05D004278 ORTHO05D005544 2.7e-89 332.4 223 86.1
Eucgr.I00724 Eucalyptus grandis HOM05D004278 ORTHO05D005544 3.5e-89 332.0 222 86.9
COL.COLO4_25931 Corchorus olitorius HOM05D004278 ORTHO05D005544 7.7e-89 330.9 223 86.1
Gohir.D02G215700 Gossypium hirsutum HOM05D004278 ORTHO05D005544 7.7e-89 330.9 224 85.7
Gorai.005G243700 Gossypium raimondii HOM05D004278 ORTHO05D005544 7.7e-89 330.9 224 85.7
Gohir.A03G194500 Gossypium hirsutum HOM05D004278 ORTHO05D005544 1.0e-88 330.5 224 85.7
Manes.17G101100 Manihot esculenta HOM05D004278 ORTHO05D005544 1.0e-88 330.5 223 86.1
Aqoxy2G01125 Aquilegia oxysepala HOM05D004278 ORTHO05D005544 1.3e-88 330.1 222 86.9
QL11p043693 Quercus lobata HOM05D004278 ORTHO05D005544 5.0e-88 328.2 221 85.1
Ciclev10029226m.g Citrus clementina HOM05D004278 ORTHO05D005544 6.5e-88 327.8 227 84.6
Dinv23521 Davidia involucrata HOM05D004278 ORTHO05D005544 1.5e-87 326.6 229 85.2
Dinv42064 Davidia involucrata HOM05D004278 ORTHO05D005544 3.2e-87 325.5 229 84.7
GSVIVG01031966001 Vitis vinifera HOM05D004278 ORTHO05D005544 1.2e-86 323.6 222 85.1
Haze_02384 Corylus avellana HOM05D004278 ORTHO05D005544 2.1e-86 322.8 223 86.1
DCAR_022973 Daucus carota HOM05D004278 ORTHO05D005544 3.6e-86 322.0 228 83.8
Hund00270 Selenicereus undatus HOM05D004278 ORTHO05D005544 4.7e-86 321.6 225 84.0
Atru.chr5.3016 Acer truncatum HOM05D004278 ORTHO05D005544 6.1e-86 321.2 226 83.2
MSTRG.5398 Avicennia marina HOM05D004278 ORTHO05D005544 6.1e-86 321.2 229 82.5
CANSAT01G0337 Cannabis sativa HOM05D004278 ORTHO05D005544 8.0e-86 320.9 223 84.8
Nitab4.5_0005152g0090 Nicotiana tabacum HOM05D004278 ORTHO05D005544 1.0e-85 320.5 230 83.0
Peaxi162Scf00016g00727 Petunia axillaris HOM05D004278 ORTHO05D005544 1.0e-85 320.5 230 83.9
Oeu055570.1 Olea europaea HOM05D004278 ORTHO05D005544 1.4e-85 320.1 229 83.8
EL10Ac9g21724 Beta vulgaris HOM05D004278 ORTHO05D005544 3.0e-85 318.9 225 83.6
Rhsim11G0177100 Rhododendron simsii HOM05D004278 ORTHO05D005544 3.0e-85 318.9 223 85.7
Sopen10g023040 Solanum pennellii HOM05D004278 ORTHO05D005544 3.0e-85 318.9 230 82.2
PGSC0003DMG400033912 Solanum tuberosum HOM05D004278 ORTHO05D005544 3.0e-85 318.9 230 82.2
Hma1.2p1_0066F.1_g036410 Hydrangea macrophylla HOM05D004278 ORTHO05D005544 4.0e-85 318.5 232 82.8
HanXRQChr05g0152721 Helianthus annuus HOM05D004278 ORTHO05D005544 5.2e-85 318.2 229 83.8
SalBow6G3946 Salvia bowleyana HOM05D004278 ORTHO05D005544 6.8e-85 317.8 229 83.0
SalBow6G5126 Salvia bowleyana HOM05D004278 ORTHO05D005544 6.8e-85 317.8 229 83.0
THA.LOC104804724 Tarenaya hassleriana HOM05D004278 ORTHO05D005544 6.8e-85 317.8 223 83.4
HanXRQChr16g0505671 Helianthus annuus HOM05D004278 ORTHO05D005544 8.8e-85 317.4 228 83.8
Lsat_1_v5_gn_7_89240 Lactuca sativa HOM05D004278 ORTHO05D005544 8.8e-85 317.4 227 83.7
Solyc01g109620.3 Solanum lycopersicum HOM05D004278 ORTHO05D005544 8.8e-85 317.4 230 83.5
Sopen01g051810 Solanum pennellii HOM05D004278 ORTHO05D005544 8.8e-85 317.4 230 83.5
PGSC0003DMG400000726 Solanum tuberosum HOM05D004278 ORTHO05D005544 8.8e-85 317.4 230 83.5
Ah.01g019390 Amaranthus hybridus HOM05D004278 ORTHO05D005544 1.2e-84 317.0 225 83.6
Lsat_1_v5_gn_9_108541 Lactuca sativa HOM05D004278 ORTHO05D005544 1.5e-84 316.6 229 83.8
Nitab4.5_0004172g0100 Nicotiana tabacum HOM05D004278 ORTHO05D005544 1.5e-84 316.6 230 83.0
Cc02_g25830 Coffea canephora HOM05D004278 ORTHO05D005544 2.0e-84 316.2 229 82.1
Sp1g14840 Schrenkiella parvula HOM05D004278 ORTHO05D005544 2.0e-84 316.2 223 83.0
Solyc10g051350.2 Solanum lycopersicum HOM05D004278 ORTHO05D005544 2.0e-84 316.2 230 81.7
CDE10G0378 Ceratophyllum demersum HOM05D004278 ORTHO05D005544 3.4e-84 315.5 223 83.0
Migut.N01239 Erythranthe guttata HOM05D004278 ORTHO05D005544 3.4e-84 315.5 229 82.1
THA.LOC104815454 Tarenaya hassleriana HOM05D004278 ORTHO05D005544 3.4e-84 315.5 219 84.0
CAN.G1.42 Capsicum annuum HOM05D004278 ORTHO05D005544 7.5e-84 314.3 233 81.1
ECA240G2473 Erigeron canadensis HOM05D004278 ORTHO05D005544 9.8e-84 313.9 226 83.2
Ah.01g006270 Amaranthus hybridus HOM05D004278 ORTHO05D005544 1.7e-83 313.2 225 83.1
AL1G28860 Arabidopsis lyrata HOM05D004278 ORTHO05D005544 1.7e-83 313.2 223 82.1
AT1G16700 Arabidopsis thaliana HOM05D004278 ORTHO05D005544 1.7e-83 313.2 223 82.1
Thhalv10008714m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 3.7e-83 312.0 223 82.1
A06p12670 Brassica napus HOM05D004278 ORTHO05D005544 4.8e-83 311.6 223 81.6
A07p27370 Brassica napus HOM05D004278 ORTHO05D005544 4.8e-83 311.6 223 81.2
BraA07t30378Z Brassica rapa HOM05D004278 ORTHO05D005544 4.8e-83 311.6 223 81.2
AUR62011323 Chenopodium quinoa HOM05D004278 ORTHO05D005544 4.8e-83 311.6 224 83.0
AUR62016737 Chenopodium quinoa HOM05D004278 ORTHO05D005544 4.8e-83 311.6 224 83.0
C06p30230 Brassica napus HOM05D004278 ORTHO05D005544 6.3e-83 311.2 223 81.2
BolC6t38186H Brassica oleracea HOM05D004278 ORTHO05D005544 6.3e-83 311.2 223 81.2
Carub.0002s2588 Capsella rubella HOM05D004278 ORTHO05D005544 1.4e-82 310.1 223 81.6
CARHR017160 Cardamine hirsuta HOM05D004278 ORTHO05D005544 1.8e-82 309.7 223 82.1
BcaC08g45392 Brassica carinata HOM05D004278 ORTHO05D005544 2.4e-82 309.3 223 80.7
Thhalv10019110m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 2.4e-82 309.3 223 81.2
Sp5g34060 Schrenkiella parvula HOM05D004278 ORTHO05D005544 2.4e-82 309.3 223 80.7
Carub.0001s1643 Capsella rubella HOM05D004278 ORTHO05D005544 3.1e-82 308.9 223 81.2
C05p14970 Brassica napus HOM05D004278 ORTHO05D005544 7.0e-82 307.8 223 82.1
AL2G39470 Arabidopsis lyrata HOM05D004278 ORTHO05D005544 9.1e-82 307.4 223 81.2
AT1G79010 Arabidopsis thaliana HOM05D004278 ORTHO05D005544 9.1e-82 307.4 223 81.2
BcaC08g47465 Brassica carinata HOM05D004278 ORTHO05D005544 9.1e-82 307.4 223 80.7
C06p52880 Brassica napus HOM05D004278 ORTHO05D005544 9.1e-82 307.4 223 80.7
BolC6t40306H Brassica oleracea HOM05D004278 ORTHO05D005544 9.1e-82 307.4 223 80.7
unitig_22.g5173 Utricularia gibba HOM05D004278 ORTHO05D005544 9.1e-82 307.4 228 79.4
A07p44150 Brassica napus HOM05D004278 ORTHO05D005544 1.6e-81 306.6 223 80.3
BraA07t31923Z Brassica rapa HOM05D004278 ORTHO05D005544 1.6e-81 306.6 223 80.3
BcaB02g07191 Brassica carinata HOM05D004278 ORTHO05D005544 2.0e-81 306.2 224 80.4
vmacro02107 Vaccinium macrocarpon HOM05D004278 ORTHO05D005544 3.5e-81 305.4 269 72.1
HPP92_001858 Vanilla planifolia HOM05D004278 ORTHO05D005544 4.5e-81 305.1 227 81.9
Os03g0774200 Oryza sativa ssp. japonica HOM05D004278 ORTHO05D005544 5.9e-81 304.7 224 82.6
Duzib052G0763 Durio zibethinus HOM05D004278 ORTHO05D005544 6.5e-80 301.2 229 80.3
CAN.G1412.6 Capsicum annuum HOM05D004278 ORTHO05D005544 1.9e-79 299.7 188 91.5
Aa31LG7G1160 Aethionema arabicum HOM05D002153 ORTHO05D002137 4.2e-79 298.5 205 84.9
Aa31LG4G1970 Aethionema arabicum HOM05D003886 ORTHO05D004587 5.5e-79 298.1 202 85.6
arahy.Tifrunner.gnm1.ann1.Z91YIY Arachis hypogaea HOM05D004278 ORTHO05D005544 7.2e-79 297.7 191 90.6
ATR0733G183 Amborella trichopoda HOM05D004278 ORTHO05D005544 9.4e-79 297.4 180 95.6
MBI16_g28725_MAGBIO Magnolia biondii HOM05D004278 ORTHO05D005544 2.1e-78 296.2 209 84.2
SGA_v2.0_scaffold58G20535 Striga asiatica HOM05D004278 ORTHO05D005544 2.1e-78 296.2 188 91.0
Zm00001eb059090 Zea mays HOM05D004278 ORTHO05D005544 2.1e-78 296.2 224 79.9
CARHR072680 Cardamine hirsuta HOM05D004278 ORTHO05D005544 8.0e-78 294.3 204 85.8
Nitab4.5_0001361g0250 Nicotiana tabacum HOM05D004278 ORTHO05D005544 8.0e-78 294.3 188 90.4
Nitab4.5_0000308g0130 Nicotiana tabacum HOM05D004278 ORTHO05D005544 2.3e-77 292.7 197 88.3
BraA06t24427Z Brassica rapa HOM05D002153 ORTHO05D002137 6.8e-77 291.2 203 84.7
Hund06234 Selenicereus undatus HOM05D004278 ORTHO05D005544 1.3e-75 287.0 279 58.1
Lj5A197T63 Lonicera japonica HOM05D004278 ORTHO05D005544 9.2e-74 280.8 168 97.0
SEGI_37571 Sequoiadendron giganteum HOM05D004278 ORTHO05D005544 1.2e-73 280.4 187 87.7
BcaC05g25531 Brassica carinata HOM05D002153 ORTHO05D002137 2.8e-70 269.2 201 81.1
Pp3c9_8460 Physcomitrium patens HOM05D004278 ORTHO05D005544 6.1e-70 268.1 187 85.0
Pp3c15_4330 Physcomitrium patens HOM05D004278 ORTHO05D005544 8.0e-70 267.7 205 79.5
Sc18g0004460 Simmondsia chinensis HOM05D004278 ORTHO05D005544 1.2e-68 263.8 193 82.9
BolC5t30212H Brassica oleracea HOM05D004278 ORTHO05D005544 5.7e-68 261.5 223 70.9
Gorai.008G028900 Gossypium raimondii HOM05D004278 ORTHO05D005544 5.7e-68 261.5 220 66.8
SGA_v2.0_scaffold32G13166 Striga asiatica HOM05D004278 ORTHO05D005544 1.3e-67 260.4 197 79.7
CBR_g34677 Chara braunii HOM05D004278 ORTHO05D005544 1.8e-66 256.5 169 88.8
Mapoly0008s0062 Marchantia polymorpha HOM05D004278 ORTHO05D005544 3.2e-66 255.8 166 89.2
SMO228G0074 Selaginella moellendorffii HOM05D004278 ORTHO05D005544 7.8e-65 251.1 180 83.3
Ca_17266_v3 Cicer arietinum L. HOM05D004278 ORTHO05D005544 1.2e-62 243.8 137 89.1
Gohir.A12G028800 Gossypium hirsutum HOM05D004278 ORTHO05D005544 1.0e-61 240.7 181 79.0
Actinidia17816 Actinidia chinensis HOM05D004278 ORTHO05D005544 1.4e-61 240.4 148 96.6
MCO04G399 Micromonas commoda HOM05D004278 ORTHO05D005544 1.4e-61 240.4 201 72.6
Glyma.05G236100 Glycine max HOM05D004278 ORTHO05D005544 5.8e-60 235.0 148 90.5
Cre12.g496750 Chlamydomonas reinhardtii HOM05D004278 ORTHO05D005544 7.0e-58 228.0 178 79.8
CSS0043835 Camellia sinensis var. sinensis HOM05D004278 ORTHO05D005544 3.9e-56 222.2 180 68.9
PRCOL_00001402 Prasinoderma coloniale HOM05D004278 ORTHO05D005544 3.9e-56 222.2 166 77.7
CDE10G0028 Ceratophyllum demersum HOM05D004278 ORTHO05D005544 6.6e-56 221.5 137 95.6
Gohir.D12G028300 Gossypium hirsutum HOM05D004278 ORTHO05D005544 3.3e-55 219.2 238 57.6
Haze_27004 Corylus avellana HOM05D004278 ORTHO05D005544 1.6e-54 216.9 191 71.2
Zm00001eb213750 Zea mays HOM05D004278 ORTHO05D005544 2.1e-54 216.5 154 72.1
AagrBONN_evm.TU.Sc2ySwM_117.1035 Anthoceros agrestis HOM05D004278 ORTHO05D005544 9.8e-52 207.6 140 88.6
Potri.004G154900 Populus trichocarpa HOM05D004278 ORTHO05D005544 8.3e-51 204.5 132 95.5
Cfa025738 Carpinus fangiana HOM05D004278 ORTHO05D005544 6.0e-49 198.4 162 75.3
TAR376G0025 Trochodendron aralioides HOM05D002092 ORTHO05D005410 3.9e-48 195.7 114 80.7
Lj2g0023328 Lotus japonicus HOM05D004278 ORTHO05D005544 8.6e-48 194.5 161 65.8
HPP92_001874 Vanilla planifolia HOM05D004278 ORTHO05D431721 1.4e-34 150.6 122 67.2
TAR625G0183 Trochodendron aralioides HOM05D004278 ORTHO05D416112 3.0e-32 142.9 127 59.8
Sc08g0000500 Simmondsia chinensis HOM05D004278 ORTHO05D021139 5.8e-28 128.6 92 71.7
Thhalv10017872m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 5.6e-23 112.1 203 38.4
Lsat_1_v5_gn_5_118541 Lactuca sativa HOM05D004278 ORTHO05D021139 2.4e-18 96.7 109 49.5
TAR376G0081 Trochodendron aralioides HOM05D004278 ORTHO05D021139 3.2e-18 96.3 47 97.9
HanXRQChr15g0486481 Helianthus annuus HOM05D004278 ORTHO05D021139 1.0e-16 91.3 78 64.1
Ca_28908_v3 Cicer arietinum L. HOM05D004278 ORTHO05D004593 1.8e-08 63.9 109 45.0
Lsat_1_v5_gn_3_134741 Lactuca sativa HOM05D004278 ORTHO05D021139 1.1e-07 61.2 60 53.3


User provided reference genes

Program Settings