Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat4g080360 Pisum sativum HOM05D004917 ORTHO05D005954 3.9e-145 518.1 253 100.0
Medtr4g097500 Medicago truncatula HOM05D004917 ORTHO05D005954 4.0e-126 454.9 253 87.4
Ca_22095_v3 Cicer arietinum L. HOM05D004917 ORTHO05D005954 7.3e-120 434.1 253 84.6
Lj4g0024725 Lotus japonicus HOM05D004917 ORTHO05D005954 3.9e-113 411.8 256 79.7
Glyma.17G158500 Glycine max HOM05D004917 ORTHO05D005954 1.6e-106 389.8 250 76.0
Phvul.003G232900 Phaseolus vulgaris HOM05D004917 ORTHO05D005954 2.8e-103 379.0 251 73.7
VMungo0251G1412 Vigna mungo HOM05D004917 ORTHO05D005954 3.7e-103 378.6 250 73.6
Glyma.17G158400 Glycine max HOM05D004917 ORTHO05D005954 8.2e-103 377.5 250 73.6
arahy.Tifrunner.gnm1.ann1.1K25L2 Arachis hypogaea HOM05D004917 ORTHO05D005954 2.6e-101 372.5 252 73.4
arahy.Tifrunner.gnm1.ann1.UB5R5Q Arachis hypogaea HOM05D004917 ORTHO05D005954 2.5e-99 365.9 252 72.6
Cfa004388 Carpinus fangiana HOM05D004917 ORTHO05D005954 1.3e-97 360.1 230 74.8
TAR628G1580 Trochodendron aralioides HOM05D004917 ORTHO05D005954 1.3e-97 360.1 249 70.3
Atru.chr3.1060 Acer truncatum HOM05D004917 ORTHO05D005954 5.1e-97 358.2 247 70.9
Eucgr.H02332 Eucalyptus grandis HOM05D004917 ORTHO05D005954 8.7e-97 357.5 209 79.9
QL06p038930 Quercus lobata HOM05D004917 ORTHO05D005954 8.7e-97 357.5 261 68.2
Phvul.003G232800 Phaseolus vulgaris HOM05D004917 ORTHO05D005954 1.9e-96 356.3 249 71.5
Prupe.6G216800 Prunus persica HOM05D004917 ORTHO05D005954 1.9e-96 356.3 261 70.9
Cc07_g07360 Coffea canephora HOM05D004917 ORTHO05D005954 4.3e-96 355.1 228 75.0
FvH4_1g18250 Fragaria vesca HOM05D004917 ORTHO05D005954 5.7e-96 354.8 239 72.8
GSVIVG01004399001 Vitis vinifera HOM05D004917 ORTHO05D005954 5.7e-96 354.8 254 70.9
Sabra14G0006700 Salix brachista HOM05D004917 ORTHO05D005954 1.6e-95 353.2 229 72.5
Potri.014G012100 Populus trichocarpa HOM05D004917 ORTHO05D005954 2.1e-95 352.8 223 74.9
Lalb_Chr11g0075991 Lupinus albus HOM05D004917 ORTHO05D005954 8.2e-95 350.9 252 72.6
RcHm_v2.0_Chr2g0108761 Rosa chinensis HOM05D004917 ORTHO05D005954 8.2e-95 350.9 253 71.9
Thecc.01G076300 Theobroma cacao HOM05D004917 ORTHO05D005954 8.2e-95 350.9 251 68.9
VMungo0251G2665 Vigna mungo HOM05D004917 ORTHO05D005954 1.1e-94 350.5 250 69.2
Ciclev10026314m.g Citrus clementina HOM05D004917 ORTHO05D005954 1.4e-94 350.1 258 70.5
Cpa.g.sc673.2 Carica papaya HOM05D004917 ORTHO05D005954 2.4e-94 349.4 248 69.0
PSO017G2968 Papaver somniferum HOM05D004917 ORTHO05D005954 3.1e-94 349.0 254 69.7
COL.COLO4_11615 Corchorus olitorius HOM05D004917 ORTHO05D005954 4.1e-94 348.6 212 78.8
TWI74G1062 Tripterygium wilfordii HOM05D004917 ORTHO05D005954 4.1e-94 348.6 247 67.2
Manes.13G109000 Manihot esculenta HOM05D004917 ORTHO05D005954 4.5e-93 345.1 251 69.7
Nn5g30667 Nelumbo nucifera HOM05D004917 ORTHO05D005954 4.5e-93 345.1 264 67.4
Hma1.2p1_0424F.1_g150480 Hydrangea macrophylla HOM05D004917 ORTHO05D005954 5.9e-93 344.7 204 77.9
RcHm_v2.0_Chr2g0108751 Rosa chinensis HOM05D004917 ORTHO05D005954 2.9e-92 342.4 250 68.8
PGSC0003DMG400003322 Solanum tuberosum HOM05D004917 ORTHO05D005954 2.9e-92 342.4 232 69.4
Actinidia16409 Actinidia chinensis HOM05D004917 ORTHO05D005954 5.0e-92 341.7 233 70.4
Sopen02g014680 Solanum pennellii HOM05D004917 ORTHO05D005954 5.0e-92 341.7 239 68.6
Rhsim08G0090300 Rhododendron simsii HOM05D004917 ORTHO05D005954 6.5e-92 341.3 247 68.4
PSO170G3850 Papaver somniferum HOM05D004917 ORTHO05D005954 8.5e-92 340.9 254 68.9
CANSAT01G2436 Cannabis sativa HOM05D004917 ORTHO05D005954 1.4e-91 340.1 237 67.5
FAN26G0787 Fragaria x ananassa HOM05D004917 ORTHO05D005954 1.4e-91 340.1 239 70.3
CAN.G775.1 Capsicum annuum HOM05D004917 ORTHO05D005954 3.2e-91 339.0 232 68.5
FAN19G2004 Fragaria x ananassa HOM05D004917 ORTHO05D005954 9.3e-91 337.4 230 72.2
MD02G1189600 Malus domestica HOM05D004917 ORTHO05D005954 2.7e-90 335.9 253 67.2
Eucgr.H02333 Eucalyptus grandis HOM05D004917 ORTHO05D005954 3.6e-90 335.5 266 65.4
GSVIVG01007444001 Vitis vinifera HOM05D004917 ORTHO05D005954 4.6e-90 335.1 198 77.3
Duzib147G0189 Durio zibethinus HOM05D004917 ORTHO05D005954 6.1e-90 334.7 252 65.1
FAN23G1748 Fragaria x ananassa HOM05D004917 ORTHO05D005954 6.1e-90 334.7 253 67.6
Sed0017274 Sechium edule HOM05D004917 ORTHO05D005954 6.1e-90 334.7 240 68.3
Sc07g0000430 Simmondsia chinensis HOM05D004917 ORTHO05D005954 7.9e-90 334.3 256 65.6
Gorai.008G085700 Gossypium raimondii HOM05D004917 ORTHO05D005954 1.0e-89 334.0 196 77.0
vmacro18012 Vaccinium macrocarpon HOM05D004917 ORTHO05D005954 1.0e-89 334.0 202 75.2
PGR102G2131 Punica granatum HOM05D004917 ORTHO05D005954 1.3e-89 333.6 208 74.0
Thecc.01G076400 Theobroma cacao HOM05D004917 ORTHO05D005954 1.8e-89 333.2 241 69.3
COL.COLO4_11616 Corchorus olitorius HOM05D004917 ORTHO05D005954 3.0e-89 332.4 201 75.1
Gohir.D12G076900 Gossypium hirsutum HOM05D004917 ORTHO05D005954 3.0e-89 332.4 196 76.5
Aqoxy1G00260 Aquilegia oxysepala HOM05D004917 ORTHO05D005954 6.7e-89 331.3 210 73.3
CiPaw.01G001900 Carya illinoinensis HOM05D004917 ORTHO05D005954 8.7e-89 330.9 196 77.0
FvH4_1g18230 Fragaria vesca HOM05D004917 ORTHO05D005954 8.7e-89 330.9 253 67.2
FAN19G0182 Fragaria x ananassa HOM05D004917 ORTHO05D005954 8.7e-89 330.9 253 67.2
ECA232G4556 Erigeron canadensis HOM05D004917 ORTHO05D005954 1.9e-88 329.7 232 68.1
CsaV3_2G016370 Cucumis sativus L. HOM05D004917 ORTHO05D005954 2.5e-88 329.3 254 66.1
Gorai.011G108500 Gossypium raimondii HOM05D004917 ORTHO05D005954 3.3e-88 328.9 250 65.6
Lsat_1_v5_gn_4_160020 Lactuca sativa HOM05D004917 ORTHO05D005954 4.3e-88 328.6 250 65.6
Gohir.D10G098900 Gossypium hirsutum HOM05D004917 ORTHO05D005954 1.6e-87 326.6 250 65.2
Gohir.A10G089200 Gossypium hirsutum HOM05D004917 ORTHO05D005954 2.2e-87 326.2 250 65.2
Zm00001eb215580 Zea mays HOM05D004917 ORTHO05D005954 4.8e-87 325.1 219 70.3
FvH4_1g18251 Fragaria vesca HOM05D004917 ORTHO05D005954 6.3e-87 324.7 193 77.7
EL10Ac6g15593 Beta vulgaris HOM05D004917 ORTHO05D005954 1.4e-86 323.6 237 67.1
PSO170G3322 Papaver somniferum HOM05D004917 ORTHO05D005954 2.4e-86 322.8 203 74.9
HanXRQChr09g0262071 Helianthus annuus HOM05D004917 ORTHO05D005954 5.3e-86 321.6 242 66.9
Os03g0729200 Oryza sativa ssp. japonica HOM05D004917 ORTHO05D005954 6.9e-86 321.2 255 63.5
DCAR_014953 Daucus carota HOM05D004917 ORTHO05D005954 3.4e-85 318.9 258 62.0
Carub.0008s2673 Capsella rubella HOM05D004917 ORTHO05D005954 7.7e-85 317.8 222 69.8
SalBow5G1886 Salvia bowleyana HOM05D004917 ORTHO05D005954 7.7e-85 317.8 206 71.4
PSO017G2694 Papaver somniferum HOM05D004917 ORTHO05D005954 2.2e-84 316.2 194 75.8
Thhalv10004770m.g Eutrema salsugineum HOM05D004917 ORTHO05D005954 3.8e-84 315.5 202 72.3
Sp2g28930 Schrenkiella parvula HOM05D004917 ORTHO05D005954 3.8e-84 315.5 205 72.2
AL8G43550 Arabidopsis lyrata HOM05D004917 ORTHO05D005954 5.0e-84 315.1 250 63.2
AT5G65840 Arabidopsis thaliana HOM05D004917 ORTHO05D005954 1.4e-83 313.5 211 70.6
Migut.L00432 Erythranthe guttata HOM05D004917 ORTHO05D005954 2.5e-83 312.8 235 64.7
AUR62007540 Chenopodium quinoa HOM05D004917 ORTHO05D005954 9.4e-83 310.8 192 75.0
Haze_15025 Corylus avellana HOM05D004917 ORTHO05D005954 9.4e-83 310.8 240 65.8
FAN28G2407 Fragaria x ananassa HOM05D004917 ORTHO05D005954 2.1e-82 309.7 228 67.1
Ah.03g140710 Amaranthus hybridus HOM05D004917 ORTHO05D005954 3.6e-82 308.9 184 77.7
THA.LOC104827747 Tarenaya hassleriana HOM05D004917 ORTHO05D005954 3.6e-82 308.9 256 60.5
BcaB04g20033 Brassica carinata HOM05D004917 ORTHO05D005954 4.6e-82 308.5 246 61.8
BcaB04g20036 Brassica carinata HOM05D004917 ORTHO05D005954 4.6e-82 308.5 246 61.8
AUR62004032 Chenopodium quinoa HOM05D004917 ORTHO05D005954 6.1e-82 308.1 192 74.5
SEGI_14750 Sequoiadendron giganteum HOM05D004917 ORTHO05D005954 6.1e-82 308.1 185 75.7
Aa31LG1G16240 Aethionema arabicum HOM05D006600 ORTHO05D008446 7.9e-82 307.8 224 66.5
Lj4A165T49 Lonicera japonica HOM05D004917 ORTHO05D005954 2.3e-81 306.2 261 61.3
GSVIVG01007168001 Vitis vinifera HOM05D004917 ORTHO05D005954 2.3e-81 306.2 160 88.8
BcaC04g23243 Brassica carinata HOM05D004917 ORTHO05D005954 3.0e-81 305.8 245 60.8
C09p10750 Brassica napus HOM05D004917 ORTHO05D005954 1.1e-80 303.9 241 61.8
BolC9t53970H Brassica oleracea HOM05D004917 ORTHO05D005954 2.6e-80 302.8 245 60.0
BraA09t36573Z Brassica rapa HOM05D004917 ORTHO05D005954 2.6e-80 302.8 250 59.6
PSO017G4293 Papaver somniferum HOM05D004917 ORTHO05D005954 5.7e-80 301.6 201 72.1
A09p09210 Brassica napus HOM05D004917 ORTHO05D005954 1.7e-79 300.1 245 60.0
ClCG02G012210 Citrullus lanatus HOM05D004917 ORTHO05D005954 1.7e-79 300.1 264 59.5
RcHm_v2.0_Chr2g0108771 Rosa chinensis HOM05D004917 ORTHO05D005954 1.7e-79 300.1 198 72.2
CARHR279840 Cardamine hirsuta HOM05D004917 ORTHO05D005954 2.2e-79 299.7 262 59.5
PSO170G4503 Papaver somniferum HOM05D004917 ORTHO05D005954 2.2e-79 299.7 203 71.9
MELO3C020846.2 Cucumis melo HOM05D004917 ORTHO05D005954 2.4e-78 296.2 253 60.1
Nitab4.5_0000036g0150 Nicotiana tabacum HOM05D004917 ORTHO05D005954 2.4e-78 296.2 161 83.9
ATR0739G130 Amborella trichopoda HOM05D004917 ORTHO05D005954 3.1e-78 295.8 185 74.6
DCAR_000455 Daucus carota HOM05D004917 ORTHO05D005954 6.9e-78 294.7 167 78.4
CSS0005558 Camellia sinensis var. sinensis HOM05D004917 ORTHO05D005954 1.3e-76 290.4 252 61.5
Oeu013341.1 Olea europaea HOM05D004917 ORTHO05D005954 3.8e-76 288.9 157 83.4
SGA_v2.0_scaffold79G25603 Striga asiatica HOM05D004917 ORTHO05D005954 3.8e-76 288.9 230 65.7
FAN26G1896 Fragaria x ananassa HOM05D004917 ORTHO05D005954 1.9e-75 286.6 253 60.1
CDE02G4371 Ceratophyllum demersum HOM05D004917 ORTHO05D005954 6.7e-73 278.1 201 64.7
Migut.L00430 Erythranthe guttata HOM05D004917 ORTHO05D005954 1.1e-72 277.3 197 66.5
Peaxi162Scf00449g00417 Petunia axillaris HOM05D004917 ORTHO05D005954 9.7e-72 274.2 256 56.6
Dinv26959 Davidia involucrata HOM05D004917 ORTHO05D005954 2.6e-69 266.2 163 77.3
Os03g0729300 Oryza sativa ssp. japonica HOM05D004917 ORTHO05D005954 3.8e-68 262.3 205 61.5
Nitab4.5_0007379g0030 Nicotiana tabacum HOM05D004917 ORTHO05D005954 1.6e-66 256.9 263 54.8
MBI16_g06077_MAGBIO Magnolia biondii HOM05D004917 ORTHO05D005954 7.7e-61 238.0 250 54.4
Hund16417 Selenicereus undatus HOM05D004917 ORTHO05D005954 5.5e-59 231.9 148 75.0
Pp3c27_7100 Physcomitrium patens HOM05D004917 ORTHO05D005954 7.2e-59 231.5 182 53.8
AagrBONN_evm.TU.Sc2ySwM_368.1530 Anthoceros agrestis HOM05D004917 ORTHO05D005954 1.2e-53 214.2 228 49.1
Zm00001eb056030 Zea mays HOM05D004917 ORTHO05D005954 4.2e-51 205.7 131 71.0
unitig_37.g11996 Utricularia gibba HOM05D004917 ORTHO05D005954 1.2e-50 204.1 188 57.4
FAN23G2689 Fragaria x ananassa HOM05D004917 ORTHO05D005954 3.0e-49 199.5 152 67.8
QL06p038908 Quercus lobata HOM05D004917 ORTHO05D005954 7.0e-46 188.3 102 83.3
GSVIVG01004400001 Vitis vinifera HOM05D004917 ORTHO05D005954 2.7e-45 186.4 103 80.6
ATR0739G160 Amborella trichopoda HOM05D004917 ORTHO05D005954 4.1e-38 162.5 108 64.8
QL06p038910 Quercus lobata HOM05D004917 ORTHO05D005954 1.9e-35 153.7 92 73.9
GSVIVG01007167001 Vitis vinifera HOM05D004917 ORTHO05D005954 6.2e-34 148.7 98 70.4
QL02p069743 Quercus lobata HOM05D004917 ORTHO05D005954 1.1e-33 147.9 95 69.5
FAN28G0406 Fragaria x ananassa HOM05D004917 ORTHO05D005954 3.7e-31 139.4 101 67.3
FAN26G2723 Fragaria x ananassa HOM05D004917 ORTHO05D005954 7.8e-29 131.7 192 39.6
PGR004G2860 Punica granatum HOM05D007024 ORTHO05D008865 3.2e-22 109.8 227 31.7
MCO14G127 Micromonas commoda HOM05D004917 ORTHO05D005954 5.4e-22 109.0 159 37.7
Sabra07G0005500 Salix brachista HOM05D004917 ORTHO05D005954 9.2e-22 108.2 153 45.8
Eucgr.K03198 Eucalyptus grandis HOM05D007024 ORTHO05D008865 1.0e-20 104.8 195 30.8
Potri.007G007201 Populus trichocarpa HOM05D004917 ORTHO05D005954 1.3e-20 104.4 69 75.4
Carub.0004s1915 Capsella rubella HOM05D007024 ORTHO05D008865 1.7e-20 104.0 210 31.0
AT2G37240 Arabidopsis thaliana HOM05D007024 ORTHO05D008865 6.6e-20 102.1 220 29.5
arahy.Tifrunner.gnm1.ann1.4131RS Arachis hypogaea HOM05D007024 ORTHO05D008865 1.1e-19 101.3 235 28.9
C04p10750 Brassica napus HOM05D007024 ORTHO05D008865 1.5e-19 100.9 238 29.4
BolC4t22670H Brassica oleracea HOM05D007024 ORTHO05D008865 1.5e-19 100.9 238 29.4
BraA05t19834Z Brassica rapa HOM05D007024 ORTHO05D008865 1.5e-19 100.9 182 31.9
Sp4g19560 Schrenkiella parvula HOM05D007024 ORTHO05D008865 1.5e-19 100.9 247 29.6
A05p08660 Brassica napus HOM05D007024 ORTHO05D008865 1.9e-19 100.5 182 31.9
Aa31LG5G22570 Aethionema arabicum HOM05D007024 ORTHO05D008865 2.5e-19 100.1 180 29.4
AL4G33620 Arabidopsis lyrata HOM05D007024 ORTHO05D008865 2.5e-19 100.1 244 29.5
CsaV3_4G024400 Cucumis sativus L. HOM05D007024 ORTHO05D008865 2.5e-19 100.1 188 31.4
Duzib106G2062 Durio zibethinus HOM05D007024 ORTHO05D008865 3.3e-19 99.8 197 30.5
QL07p045588 Quercus lobata HOM05D007024 ORTHO05D008865 3.3e-19 99.8 191 31.9
Sed0013795 Sechium edule HOM05D007024 ORTHO05D008865 4.3e-19 99.4 188 31.4
ClCG04G008760 Citrullus lanatus HOM05D007024 ORTHO05D008865 7.3e-19 98.6 221 30.3
THA.LOC104805324 Tarenaya hassleriana HOM05D007024 ORTHO05D008865 7.3e-19 98.6 254 29.1
BcaC02g11844 Brassica carinata HOM05D007024 ORTHO05D008865 9.5e-19 98.2 238 28.6
Ciclev10013683m.g Citrus clementina HOM05D007024 ORTHO05D008865 9.5e-19 98.2 195 30.8
Thhalv10017137m.g Eutrema salsugineum HOM05D007024 ORTHO05D008865 9.5e-19 98.2 261 29.5
SMO353G0397 Selaginella moellendorffii HOM05D007024 ORTHO05D008865 9.5e-19 98.2 176 34.1
Manes.08G001700 Manihot esculenta HOM05D007024 ORTHO05D008865 1.1e-17 94.7 213 30.5
arahy.Tifrunner.gnm1.ann1.F27BB1 Arachis hypogaea HOM05D004917 ORTHO05D005954 1.8e-17 94.0 53 81.1
Zm00001eb030360 Zea mays HOM05D004917 ORTHO05D005954 1.7e-15 87.4 54 79.6
AagrBONN_evm.TU.Sc2ySwM_344.3825 Anthoceros agrestis HOM05D007024 ORTHO05D008865 6.4e-15 85.5 142 33.1
PRCOL_00004664 Prasinoderma coloniale HOM05D004917 ORTHO05D005954 1.4e-14 84.3 132 38.6
Hund12062 Selenicereus undatus HOM05D007024 ORTHO05D008865 3.2e-14 83.2 231 29.4
CDE04G0730 Ceratophyllum demersum HOM05D007024 ORTHO05D008865 2.1e-13 80.5 209 28.7
MCO06G061 Micromonas commoda HOM05D004917 ORTHO05D005954 5.1e-12 75.9 136 35.3
Ah.15g092040 Amaranthus hybridus HOM05D006367 ORTHO05D007942 1.2e-10 71.2 136 33.1
Gohir.A12G080465 Gossypium hirsutum HOM05D004917 ORTHO05D005954 3.6e-10 69.7 109 46.8
ATR0739G073 Amborella trichopoda HOM05D004917 ORTHO05D005954 2.4e-09 67.0 105 41.9
Cre17.g697050 Chlamydomonas reinhardtii HOM05D004917 ORTHO05D005954 6.9e-09 65.5 117 35.0
Haze_02356 Corylus avellana HOM05D004917 ORTHO05D005954 2.6e-08 63.5 37 78.4
arahy.Tifrunner.gnm1.ann1.GN5EPC Arachis hypogaea HOM05D007024 ORTHO05D008865 3.4e-08 63.2 126 28.6
MELO3C003072.2 Cucumis melo HOM05D007024 ORTHO05D008865 4.4e-08 62.8 122 32.0
GSVIVG01007445001 Vitis vinifera HOM05D004917 ORTHO05D005954 1.1e-06 58.2 50 50.0
PRCOL_00002665 Prasinoderma coloniale HOM05D006376 ORTHO05D008046 3.2e-06 56.6 110 31.8


User provided reference genes

Program Settings